mRNA_Ecto-sp13_S_contig10643.595.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10643.595.1
Unique NamemRNA_Ecto-sp13_S_contig10643.595.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10643.595.1 vs. uniprot
Match: D8LE74_ECTSI (Leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE74_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 4.240e-16
Identity = 50/76 (65.79%), Postives = 56/76 (73.68%), Query Frame = 1 
Query:  148 LKSLRLDSNDFSKA--TIVFRHTWQDLDKVTHSVSLCNLTVLSLKSCKLRRLDEDVAELRCLKELYLETNLILNLP 369
            LK L L +N   K   ++ F  + + L      VSLCNLTVLSLKSCKLRRLD+DVAELRCLKELYLETNLILNLP
Sbjct:  497 LKKLLLGNNQLKKLPYSVGFLTSLKTLQ-----VSLCNLTVLSLKSCKLRRLDDDVAELRCLKELYLETNLILNLP 567
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10643.595.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LE74_ECTSI4.240e-1665.79Leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10643contigEcto-sp13_S_contig10643:18..2000 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score84.7
Seed ortholog evalue4.7e-14
Seed eggNOG ortholog2880.D8LE74
Model size537
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
Cds size537
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462544.213414-CDS-Ecto-sp13_S_contig10643:17..701681462544.213414-CDS-Ecto-sp13_S_contig10643:17..70Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10643 18..70 -
1681462544.2256773-CDS-Ecto-sp13_S_contig10643:414..4991681462544.2256773-CDS-Ecto-sp13_S_contig10643:414..499Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10643 415..499 -
1681462544.2346718-CDS-Ecto-sp13_S_contig10643:747..9061681462544.2346718-CDS-Ecto-sp13_S_contig10643:747..906Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10643 748..906 -
1681462544.2445772-CDS-Ecto-sp13_S_contig10643:1446..15511681462544.2445772-CDS-Ecto-sp13_S_contig10643:1446..1551Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10643 1447..1551 -
1681462544.2546952-CDS-Ecto-sp13_S_contig10643:1865..20001681462544.2546952-CDS-Ecto-sp13_S_contig10643:1865..2000Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10643 1866..2000 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10643.595.1prot_Ecto-sp13_S_contig10643.595.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10643 18..2000 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10643.595.1

>prot_Ecto-sp13_S_contig10643.595.1 ID=prot_Ecto-sp13_S_contig10643.595.1|Name=mRNA_Ecto-sp13_S_contig10643.595.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=179bp
EEKLELQPEFDRKLAKRIKMAGRSGELNFMMEGLTNFPMGVFQEETGRKL
KSLRLDSNDFSKATIVFRHTWQDLDKVTHSVSLCNLTVLSLKSCKLRRLD
EDVAELRCLKELYLETNLILNLPETFTRLRMLEILDAKKNRLQDCPEAIG
SLSLLKRLELDGNRLEVLPPSLSQLTQLE
back to top

mRNA from alignment at Ecto-sp13_S_contig10643:18..2000-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10643.595.1 ID=mRNA_Ecto-sp13_S_contig10643.595.1|Name=mRNA_Ecto-sp13_S_contig10643.595.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1983bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10643:18..2000- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGGAGAAGCTGGAGCTCCAGCCGGAGTTTGACCGCAAGCTTGCGAAACG
CATTAAAATGGCCGGACGTAGCGGGGAGCTGAACTTTATGATGGAGGGGC
TCACCAACTTTCCGATGGGGGTATTTCAAGAAGAGGTAAGGCAATCGGAT
GAGTCATGTGTGTTGATGTTAGACCCAGACCTTGTTAAGAGAGAGCATGA
TACAAGTGATCAAAGCACAAATGGATGAGATCTACGGTGCATGATGGTGT
ATGATCACGATCCGTGACTTCTTTGTCTTGGGGCCTTGAGTGCTGGCTTG
GGGATTGTGACGGAAAACGCAGAGTTGACAACGGCTTCTGCATGTCAACA
CTGACCACAACACGATAGCGTTACCAACACCAATACCAAAGGCAGCAACA
AGAACGACACTAAGAGCATGAGGACATCATTGGACTCGTTTATCCTCAGA
CTGGGAGAAAGCTAAAGAGCCTACGGCTAGACAGCAACGACTTCAGCAAG
GCAACAATAGTGTTTCGGCACACTTGGCAAGACTTGGACAAGGTCACGCA
TTCGGTGAGCGAAGGGTACTCTTGACCCTAAGAATGAAGAGGGGCCAGGT
GGAGGAGACAAATATCACAGGAACGCCCTGCCAAGATCCTCAAAGAATGA
CATGTGAAAGTCACTACCTGGTTCGATCATGTACGTCGCTGCCACATTGT
GTCGGAGGTAATCTTGAAGATTGTAGGGGATGATGCAATGGGTGTGAAAT
GTCGTGCGTACCTGATACGGCGTTTCTCCTGGTAGAAATCCAACCACCTC
TGATCGGTTGCTCTCTTGCGTGGTTAAGGATCGTTTCTCGAATTTATTCT
GTTTGATTCACCGTTACTTTGTTGTTGGAACCCAATCCCTTATTCGTTTT
TCCTGAATCGAAACCCAGCGCTGGCTGGCCCATTTTTTTGTTTTCAGAGT
ATGTCGCAGCAACACTTCGGCAAACGGACGGTATTAGAAGAGCAGGAAGC
GTGTCGTGTGTTGTAGATTTCATTGTACGTTACCCTCCGAATCAATCGCG
TACCCCAACCCCTTGCCGACCAACCTCATGGCATTCCCCGCCAGGTTTCT
CTTTGTAACCTGACTGTTTTATCTCTGAAAAGCTGCAAGCTGCGCCGGTT
GGACGAGGATGTGGCGGAACTGAGGTGCCTGAAGGAGTTGTATCTCGAGA
CCAACCTCATCTTGAATCTTCCCGAAACTTTCACCAGACTCCGAATGCTA
GAGGTAGGTACAATGGCAGCATAGTTGATTGATTGTTCCGTGTGGTGGTC
GTTTCGAGTCAACCTTCGCTTCTCTCGTTTCGTTATTCGTCTTCTGGCCT
GTGCTATTTTCCTTCGTACCAGTGCAGACATTTCGTGGGGCTGTAAATCG
AAAACACCACACAGAATTCCGAAGCAATGTGCAATGCCACAAGATGACAC
TCTTGTTGCGACAATTTGATTCATGTCTCCGTCATGCACAAATCGGGCCA
GATCTTGGACGCAAAGAAGAACCGCTTGCAGGACTGCCCCGAGGCGATCG
GCAGCCTCTCCCTCTTGAAGCGATTGGAGCTAGACGGTGAACTCGGGATC
TCTAGTACAGTCGATAAAAATCGTCCAAGAACGTCTAGGCAGTTGCTAAC
TGAAGAAGCCGCAGGAGAGAGTTCGACAATTTTCTATAATCATGACATTT
GTTGCAAAAAAGTTGATCAAACGGAGAACAACACGAAATCATGCGCAAAC
TTCGCATCAACGAAGAATGAAAAGGAGGTTTTCCTCTGCGCAACTTATGT
TGACATATTTTAGCTGCCGTCTTATGGTTCTCAGACAAAAGGGTTGGGGT
TAGCATCTGAGGTCTATTTGGAACACATTCAAGCCATACACTGACAACAT
TGTTTTGGGCTGCTTGTTCCGTCTTTTCAGGCAACCGTCTGGAAGTCCTC
CCGCCATCGCTGTCTCAGCTCACCCAGCTGGAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10643:18..2000-

>mRNA_Ecto-sp13_S_contig10643.595.1 ID=mRNA_Ecto-sp13_S_contig10643.595.1|Name=mRNA_Ecto-sp13_S_contig10643.595.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=537bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10643:18..2000- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGGAGAAGCTGGAGCTCCAGCCGGAGTTTGACCGCAAGCTTGCGAAACG
CATTAAAATGGCCGGACGTAGCGGGGAGCTGAACTTTATGATGGAGGGGC
TCACCAACTTTCCGATGGGGGTATTTCAAGAAGAGACTGGGAGAAAGCTA
AAGAGCCTACGGCTAGACAGCAACGACTTCAGCAAGGCAACAATAGTGTT
TCGGCACACTTGGCAAGACTTGGACAAGGTCACGCATTCGGTTTCTCTTT
GTAACCTGACTGTTTTATCTCTGAAAAGCTGCAAGCTGCGCCGGTTGGAC
GAGGATGTGGCGGAACTGAGGTGCCTGAAGGAGTTGTATCTCGAGACCAA
CCTCATCTTGAATCTTCCCGAAACTTTCACCAGACTCCGAATGCTAGAGA
TCTTGGACGCAAAGAAGAACCGCTTGCAGGACTGCCCCGAGGCGATCGGC
AGCCTCTCCCTCTTGAAGCGATTGGAGCTAGACGGCAACCGTCTGGAAGT
CCTCCCGCCATCGCTGTCTCAGCTCACCCAGCTGGAG
back to top