mRNA_Ecto-sp13_S_contig18865.5950.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18865.5950.1
Unique NamemRNA_Ecto-sp13_S_contig18865.5950.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18865.5950.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18865contigEcto-sp13_S_contig18865:1125..1912 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size789
Hectar predicted targeting categoryother localisation
Exons1
Cds size516
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462963.6159532-UTR-Ecto-sp13_S_contig18865:1124..13961681462963.6159532-UTR-Ecto-sp13_S_contig18865:1124..1396Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18865 1125..1396 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462963.6250353-CDS-Ecto-sp13_S_contig18865:1396..19121681462963.6250353-CDS-Ecto-sp13_S_contig18865:1396..1912Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18865 1397..1912 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18865.5950.1prot_Ecto-sp13_S_contig18865.5950.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18865 1397..1912 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18865.5950.1

>prot_Ecto-sp13_S_contig18865.5950.1 ID=prot_Ecto-sp13_S_contig18865.5950.1|Name=mRNA_Ecto-sp13_S_contig18865.5950.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=172bp
MVTTPTLISLSFSPSRAANLLQTWQAPAILPPLRLYWRQLASAPHPLPIW
HPNQRTLSASARARDPPSPPAENNYHSLPTALLPPPAVNTKQRTRLMLGG
TAHSTPSAITFGVHERMGAIDCPTRKREAVNHHQRTPASSQTPKYSKERE
IQKENQALFAVRGSTPSDTTPC
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mRNA from alignment at Ecto-sp13_S_contig18865:1125..1912+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18865.5950.1 ID=mRNA_Ecto-sp13_S_contig18865.5950.1|Name=mRNA_Ecto-sp13_S_contig18865.5950.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=788bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18865:1125..1912+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGCAGCACATTTCGCAGAGTGCAGCTACAGGTGTAGGTCTACATAGTCG
ACAAGTCATGCAGAGCAACTTGGGAGTTCTTCCTTACGCTCCTCATGGAT
ATGATGTACGCCATCACCCAACCAACAACATCAACACACATGGAAGAGCA
CCCAAACCGTTGCAAACCATCCTCGGTGAATAACGTGTCAGGTTTTCAAA
CCACCATGCTTCCAAGTCCTGACGGCATATCTTTGCTTCTTCGCCGAAAG
TAGCATCACCCCCTTCCAAGCCATGGTAACCACCCCGACCCTCATCTCTC
TCTCTTTCTCTCCCTCTCGGGCTGCTAATCTTCTGCAAACATGGCAAGCA
CCCGCGATTCTCCCACCGCTGCGACTTTACTGGCGGCAGCTGGCGTCGGC
GCCACACCCTCTGCCCATTTGGCACCCAAACCAACGAACTCTATCCGCAT
CCGCGAGAGCAAGAGACCCGCCGTCGCCTCCTGCCGAAAATAACTACCAC
AGCTTGCCAACGGCTCTACTGCCGCCTCCCGCCGTAAATACCAAACAGAG
GACGCGTCTGATGTTGGGCGGAACAGCGCACTCAACCCCGTCGGCAATCA
CGTTTGGTGTTCACGAACGCATGGGTGCAATCGATTGCCCGACGAGGAAA
CGAGAGGCAGTAAATCATCATCAACGCACGCCAGCGAGCAGCCAGACACC
CAAGTACAGCAAAGAGAGAGAGATACAGAAAGAGAATCAAGCCCTTTTCG
CGGTACGCGGTTCAACTCCTAGCGATACAACTCCATGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18865:1125..1912+

>mRNA_Ecto-sp13_S_contig18865.5950.1 ID=mRNA_Ecto-sp13_S_contig18865.5950.1|Name=mRNA_Ecto-sp13_S_contig18865.5950.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=516bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18865:1125..1912+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTAACCACCCCGACCCTCATCTCTCTCTCTTTCTCTCCCTCTCGGGC
TGCTAATCTTCTGCAAACATGGCAAGCACCCGCGATTCTCCCACCGCTGC
GACTTTACTGGCGGCAGCTGGCGTCGGCGCCACACCCTCTGCCCATTTGG
CACCCAAACCAACGAACTCTATCCGCATCCGCGAGAGCAAGAGACCCGCC
GTCGCCTCCTGCCGAAAATAACTACCACAGCTTGCCAACGGCTCTACTGC
CGCCTCCCGCCGTAAATACCAAACAGAGGACGCGTCTGATGTTGGGCGGA
ACAGCGCACTCAACCCCGTCGGCAATCACGTTTGGTGTTCACGAACGCAT
GGGTGCAATCGATTGCCCGACGAGGAAACGAGAGGCAGTAAATCATCATC
AACGCACGCCAGCGAGCAGCCAGACACCCAAGTACAGCAAAGAGAGAGAG
ATACAGAAAGAGAATCAAGCCCTTTTCGCGGTACGCGGTTCAACTCCTAG
CGATACAACTCCATGC
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