mRNA_Ecto-sp13_S_contig1886.5949.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1886.5949.1
Unique NamemRNA_Ecto-sp13_S_contig1886.5949.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1886.5949.1 vs. uniprot
Match: D8LFT4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFT4_ECTSI)

HSP 1 Score: 422 bits (1086), Expect = 2.290e-143
Identity = 229/272 (84.19%), Postives = 237/272 (87.13%), Query Frame = 1 
Query:    1 AYEARQKQNQLGPGANKTRCLGCRAWGHIVANCPEAKAATGICFNCGSTKHALRVCPAPKQKDGSLPHATCFVCKAKGHISAHCKQNANGVYPKGGFCKWCGSKHHLSWECPESTKVDKKKLDKNVKKDDAVGTASADDVVPGPSDSGKDRGPASKEARGGXXXXXXXXXXXXAVNGGAEEGTPKRLRTIGSSGASSAR-GSKRALASRIGGDDLEDDGYYDPEDVPDASFEPPDGTEEQLGSGSSGGVAHQPSGKGGSSAKRKLSSKVVVF 813
            AYEAR+KQNQLGPGANKTRCLGCRAWGHIVANCPEAKAATGICFNCGS KHALRVCPAPKQKDGSLP+ATCF+CKAKGHISAHCKQNANGVYPKGGFCKWCGSKHHLSW+CPESTKVDKKKL+KNVKKDDA GTASA D VP P DSGKDRG ASKEARG XXXXXXXXXXXX                     ASSAR GSKRA ASRIGGDDLEDDGYYDP+DVPDASFE PDGTEE+L SGSSGGVA Q SGKGGSSAKR+LSSKVVVF
Sbjct:   80 AYEAREKQNQLGPGANKTRCLGCRAWGHIVANCPEAKAATGICFNCGSAKHALRVCPAPKQKDGSLPYATCFICKAKGHISAHCKQNANGVYPKGGFCKWCGSKHHLSWDCPESTKVDKKKLNKNVKKDDAAGTASAADDVPDPGDSGKDRGTASKEARGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASSARAGSKRAPASRIGGDDLEDDGYYDPDDVPDASFEHPDGTEEKLWSGSSGGVASQGSGKGGSSAKRQLSSKVVVF 351
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BLAST of mRNA_Ecto-sp13_S_contig1886.5949.1 vs. uniprot
Match: A0A2H9TNT6_9FUNG (CCHC-type domain-containing protein n=1 Tax=Paramicrosporidium saccamoebae TaxID=1246581 RepID=A0A2H9TNT6_9FUNG)

HSP 1 Score: 105 bits (263), Expect = 9.490e-21
Identity = 44/96 (45.83%), Postives = 62/96 (64.58%), Query Frame = 1 
Query:   46 NKTRCLGCRAWGHIVANCPEAKAATGICFNCGSTKHALRVCPAPKQKDGSLPHATCFVCKAKGHISAHCKQNANGVYPKGGFCKWCGSKHHLSWEC 333
            +K  CL CR  GH V  CP    A+ IC+NCGS  H L+ C  P+  +  LP+A+C+VC   GH++  C +N  G+YP+GG C++CGSK HL+ +C
Sbjct:   48 SKPVCLKCRKRGHSVKYCPAG--ASSICYNCGSHTHTLKACRQPRSNE--LPYASCYVCGGTGHLAGQCPKNERGIYPRGGGCRFCGSKQHLARDC 139
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BLAST of mRNA_Ecto-sp13_S_contig1886.5949.1 vs. uniprot
Match: A0A0C2XNF4_9AGAM (Uncharacterized protein n=1 Tax=Serendipita vermifera MAFF 305830 TaxID=933852 RepID=A0A0C2XNF4_9AGAM)

HSP 1 Score: 96.3 bits (238), Expect = 6.430e-19
Identity = 42/98 (42.86%), Postives = 57/98 (58.16%), Query Frame = 1 
Query:   16 QKQNQLGPGANKTRCLGCRAWGHIVANCP-------EAKAATGICFNCGSTKHALRVCPAPKQKDGSLPHATCFVCKAKGHISAHCKQNANGVYPKGG 288
            ++Q ++      T C  CR  GH   +CP       ++KA  GIC+ CGS+ H L  C  P+ + GSLP A+CFVCK  GH+++ C QN  GVYP GG
Sbjct:   75 RRQRRIQDRMMATTCFACRQRGHAAKDCPTNQGGGNKSKAGIGICYRCGSSNHTLSKCRKPRDEAGSLPFASCFVCKGTGHLASTCPQNEKGVYPNGG 172
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BLAST of mRNA_Ecto-sp13_S_contig1886.5949.1 vs. uniprot
Match: A0A1Y2CGT7_9FUNG (Uncharacterized protein n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2CGT7_9FUNG)

HSP 1 Score: 94.4 bits (233), Expect = 8.940e-18
Identity = 47/128 (36.72%), Postives = 58/128 (45.31%), Query Frame = 1 
Query:   49 KTRCLGCRAWGHIVANCPE---------------------------------AKAATGICFNCGSTKHALRVCPAPKQKDGSLPHATCFVCKAKGHISAHCKQNANGVYPKGGFCKWCGSKHHLSWEC 333
            K  C  CR  GH V NCP                                  A A  GIC+ CGST+H    C      D   P A+CFVCKA GH+++ C +N  G+YP GG CK+CGS  HL+ +C
Sbjct:  129 KMTCFLCRQKGHSVKNCPRSGDAAKLAAAEKASALDLDDQDLAAIDAEMEKSALAMEGICYRCGSTEHKSSQCKKKLNSDNPFPFASCFVCKATGHLASACPKNDKGMYPNGGSCKFCGSVKHLAKDC 256
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BLAST of mRNA_Ecto-sp13_S_contig1886.5949.1 vs. uniprot
Match: A0A835ZFQ1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFQ1_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.690e-16
Identity = 47/111 (42.34%), Postives = 62/111 (55.86%), Query Frame = 1 
Query:   43 ANKTRCLGCRAWGHIVANCPEA--KAATGICFNCGSTKHALRVCPAP---KQKDGSLPHATCFVCKAKGHISAHCKQNANGVYPKGGFCKWCGSKHHLSWECPE-STKVDK 357
            ANK  CLGCR  GH++ +C +A  +AA+ +C+ CGST+H L+ CP     + K      AT               QNA G+YPKGG CK C S  HL+ +CPE  TK D+
Sbjct:  113 ANKLYCLGCRGKGHLIKDCKKATARAASVVCYRCGSTEHTLKGCPEEARARDKRAVTTFATXXXXXXXXXXXXXXXQNARGIYPKGGCCKICESVRHLASDCPERGTKRDR 223
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BLAST of mRNA_Ecto-sp13_S_contig1886.5949.1 vs. uniprot
Match: UPI0006B0A7E6 (zinc finger CCHC domain-containing protein 9-like n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B0A7E6)

HSP 1 Score: 70.9 bits (172), Expect = 1.590e-9
Identity = 36/98 (36.73%), Postives = 44/98 (44.90%), Query Frame = 1 
Query:   58 CLGCRAWGHIVANCP----EAKAATGICFNCGSTKHALRVCPAPKQKDGSLPHATCFVCKAKGHISAHCKQNANGVYPKGGFCKWCGSKHHLSWECPE 339
            C  CR  GH++A CP    + +  T I               A K    S P A C        +S  C +N NG+YPKGG CK CGS  HL  +CPE
Sbjct:  310 CFRCRKPGHMIAQCPILEKDMEQGTSIXXXXXXXXXXXXXXXARKLGKESFPFAKCXXXXXXXXLSRQCSKNPNGLYPKGGNCKMCGSVEHLKKDCPE 407
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BLAST of mRNA_Ecto-sp13_S_contig1886.5949.1 vs. uniprot
Match: A0A0D7AP55_9AGAR (Uncharacterized protein (Fragment) n=1 Tax=Fistulina hepatica ATCC 64428 TaxID=1128425 RepID=A0A0D7AP55_9AGAR)

HSP 1 Score: 54.7 bits (130), Expect = 7.950e-5
Identity = 25/57 (43.86%), Postives = 29/57 (50.88%), Query Frame = 1 
Query:   52 TRCLGCRAWGHIVANCPEA----KAATGICFNCGSTKHALRVCPAPKQKDGSLPHAT 210
            T C  CR  GH   +CP      KAA G+C+ CGSTKH L  C      +  LP AT
Sbjct:   92 TTCFACREKGHAAKDCPNTQASEKAAIGVCYRCGSTKHTLSRCKQLSDPNNPLPFAT 148
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1886.5949.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LFT4_ECTSI2.290e-14384.19Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A2H9TNT6_9FUNG9.490e-2145.83CCHC-type domain-containing protein n=1 Tax=Parami... [more]
A0A0C2XNF4_9AGAM6.430e-1942.86Uncharacterized protein n=1 Tax=Serendipita vermif... [more]
A0A1Y2CGT7_9FUNG8.940e-1836.72Uncharacterized protein n=1 Tax=Rhizoclosmatium gl... [more]
A0A835ZFQ1_9STRA1.690e-1642.34Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
UPI0006B0A7E61.590e-936.73zinc finger CCHC domain-containing protein 9-like ... [more]
A0A0D7AP55_9AGAR7.950e-543.86Uncharacterized protein (Fragment) n=1 Tax=Fistuli... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1886contigEcto-sp13_S_contig1886:11796..14645 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score428.7
Seed ortholog evalue2e-117
Seed eggNOG ortholog2880.D8LFT4
Preferred nameZCCHC9
Model size1366
KEGG koko:K05765,ko:K17578
KEGG Pathwayko04360,ko04666,ko04810,ko05133,map04360,map04666,map04810,map05133
Hectar predicted targeting categoryother localisation
GOsGO:0008150,GO:0009892,GO:0010563,GO:0010921,GO:0010923,GO:0019220,GO:0019222,GO:0031323,GO:0031324,GO:0035303,GO:0035305,GO:0043086,GO:0044092,GO:0045936,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0051174,GO:0051336,GO:0051346,GO:0065007,GO:0065009
Exons4
EggNOG free text desc.zinc ion binding
EggNOG OGsCOG5082@1,KOG4400@2759
Ec32 ortholog descriptionZinc finger, CCHC-type
Ec32 orthologEc-01_001010.1
Cds size816
COG Functional cat.OU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko04131,ko04147,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462963.5292912-UTR-Ecto-sp13_S_contig1886:11795..123441681462963.5292912-UTR-Ecto-sp13_S_contig1886:11795..12344Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1886 11796..12344 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462963.5447762-CDS-Ecto-sp13_S_contig1886:12344..125621681462963.5447762-CDS-Ecto-sp13_S_contig1886:12344..12562Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1886 12345..12562 -
1681462963.5570586-CDS-Ecto-sp13_S_contig1886:13122..134231681462963.5570586-CDS-Ecto-sp13_S_contig1886:13122..13423Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1886 13123..13423 -
1681462963.5687075-CDS-Ecto-sp13_S_contig1886:14099..142851681462963.5687075-CDS-Ecto-sp13_S_contig1886:14099..14285Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1886 14100..14285 -
1681462963.5794907-CDS-Ecto-sp13_S_contig1886:14534..146451681462963.5794907-CDS-Ecto-sp13_S_contig1886:14534..14645Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1886 14535..14645 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1886.5949.1prot_Ecto-sp13_S_contig1886.5949.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1886 12345..14645 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1886.5949.1

>prot_Ecto-sp13_S_contig1886.5949.1 ID=prot_Ecto-sp13_S_contig1886.5949.1|Name=mRNA_Ecto-sp13_S_contig1886.5949.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=272bp
AYEARQKQNQLGPGANKTRCLGCRAWGHIVANCPEAKAATGICFNCGSTK
HALRVCPAPKQKDGSLPHATCFVCKAKGHISAHCKQNANGVYPKGGFCKW
CGSKHHLSWECPESTKVDKKKLDKNVKKDDAVGTASADDVVPGPSDSGKD
RGPASKEARGGGGKAERSTGGGGAVNGGAEEGTPKRLRTIGSSGASSARG
SKRALASRIGGDDLEDDGYYDPEDVPDASFEPPDGTEEQLGSGSSGGVAH
QPSGKGGSSAKRKLSSKVVVF*
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mRNA from alignment at Ecto-sp13_S_contig1886:11796..14645-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1886.5949.1 ID=mRNA_Ecto-sp13_S_contig1886.5949.1|Name=mRNA_Ecto-sp13_S_contig1886.5949.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2850bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1886:11796..14645- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGTACGAAGCGCGACAAAAACAGAACCAGCTGGGGCCGGGAGCGAACAA
GACTCGCTGCTTGGGGTGCAGAGCTTGGGGGCACATCGTGGCCAATTGTC
CAGAAGCGAAGGTTCGGTCTCAGTCCCACCACTCAGTGCACATACATGCC
AATCAGCATTTTACGCGGGTTTTTCTACCCATACGAACGTACTGGACAAA
GTTTAGAATCGGCGAAGTTAGGGTTGGGGTCTTCGTAACCCCCTTTCTGG
TCTTTTTTCGTACTAAACTTACTAAATCTGCGTAGGAAGTCCACGCCAAT
TCTCCCCCTGTCGTACACTCCCGTCTCCTCTTTCTTTGGCTCGTGCCGCT
GCCGAATCAGGCTGCTACGGGCATCTGCTTCAACTGCGGATCCACCAAGC
ACGCGCTGCGGGTGTGCCCCGCTCCGAAGCAGAAGGACGGAAGCCTGCCC
CACGCCACGTGCTTCGTCTGCAAGGCGAAGGGACACATCAGCGCGCACTG
CAAGCAGAACGCGAACGGCGTGTACCCCAAGGGCGGCTTTTGCAAGGTGA
GCAGTGGTTCGTTCTCGCACCTGGGGCCACTTTTGTCGTGAGACTGATTC
GCGCTTCGCGCTCGCAGCCACGCACGGGGCCCTTCTTGCTTTGTTGGTTT
GTTTGTCTATCGCGGTGGCACTTGGTTTTGGGCGGGGCGATTGTTTCACC
GCGAAGTGGTGTCGAAGCACGAAATCAACCAAATTCCCCGGGTCTTGTGA
AGCAACCGAGACGGTTGTGGCTGCTTCCCAAACAAGCAGGCAGCCGCCTC
ACTGCCGCAAAGGTTTTATTCTCCCGATCACAGAGAAGTATTCTTGGGGC
CATGCGCCTCATTGGCACATTTCTAGATGATTTCCTCGCTCTGTAAACGG
TGCAGTGCCTCCCCCGCCGCCGCCTCTATTCTGAGTAGGAACGTTGCTCC
TTCCTGACATGATACGTGGTCAATCGACAAGAAATGACCTTGAGTCAGGT
TGGCAGCAATGAAATCCTCCCGCCTTCCATTGCTCTACGTTTCCATCCTC
TCGAGGACGCGTGGTCCATGCATGGCCTAACAGCTACGGCATGCACAACA
TATTCACTCCGTTCCGGCGTTATGGGGATGCGAGATCAACGGTCTCTCAC
CGCTAAGGCATGCAAATCCTGACTCCCCCCTTCCTCCTCCCGCCTCTACT
CTCCGGAACGTTTCGCTCCAAGTGGTGCGGCTCTAAGCACCACCTGTCGT
GGGAATGCCCGGAGAGCACTAAGGTGGACAAGAAGAAGCTCGACAAAAAC
GTTAAGAAGGACGACGCTGTCGGTACTGCCTCCGCCGACGACGTTGTTCC
GGGCCCTAGCGATAGCGGCAAGGACAGAGGACCAGCATCCAAGGAGGCAA
GAGGAGGCGGCGGCAAAGCAGAAAGATCTACCGGCGGCGGGGGTGCCGTG
AACGGGGGGGCGGAAGAGGGTACCCCGAAACGTCTCAGGACTATTGGCAG
CTCTGGAGCGTCTAGCGCGAGAGGTGAGGGAGCCGTCTTCTGCATGTGTG
TTGTACTTGTGATTTTCGTGAGGGGTGATGGGTAGGAACGGCACAAGGAG
GGAGGATGGAGGGCGTACTCATGGTTTGCGCTCCTGGGCCCTAGACTTGA
GCTTACCAAGCTTTGACACCGGCTGAACACGAAGTACCAGACCAAGCGTT
CATCTCAAAGCTTTTTGACACCTGCCGCGCCGTTTCGTCCTCGACTTCGT
TGTAGAAGCACACGAAAGGTGGAGGACTCCACTTTTACCTTAAATTGTTC
GATTGTCGCGACGCGCCTCGCAGGCAAAAAAACACAAGCCCGAGCAACTT
TTAACGTGAAAAGCCACCAAGTGATCACAAATTCTGTTTCCTTTCGAAAA
TACTGAAATTGTGTGTATGTTTTTGTCCCCATCTGATGTTTCTCCAGTCT
ACACCCTTGGGTACACTTGAAGCAACGTGGCATCTGTAGTTCAGAAAACA
CAGCGGTGTTCCATTGTTGTTGTTTTTTTGTTCATGTTGTGTTTGCTCAG
TTGTTATCCCTCTCGAATCGCGCCGAGCGGCAGGCTCGAAGAGAGCACTG
GCGTCGCGGATCGGAGGCGACGACCTCGAGGACGACGGCTACTACGACCC
CGAGGACGTTCCCGACGCATCTTTCGAGCCCCCCGATGGGACGGAAGAGC
AGCTCGGGTCGGGAAGTAGCGGTGGCGTTGCCCACCAACCATCGGGGAAA
GGGGGATCGTCTGCCAAGAGGAAGTTGTCTTCCAAGGTCGTTGTGTTTTG
ATGTCGGGTAAATGCTCGTTACCGTTCAAGAGGTTGTTTGTTGTGATGTC
GGGCAAGTCTTCATTAACCGGGGGGTAATCCTTCTCTCTCGCTCTCTGTT
TGTGTTGCTAGTGCCGCTACAAACATGCACCGGTAGTCGTGAGTGCAGAC
GATCAAGAGGGAAGTGATTGCTGAAACCTGCATACTTTTGAAATAAGGGC
ACGTACTTGCTGCGGGAGGGAAGGTGGAGAATTCTTCGTTGTGTCCCCGG
CTTGTGCGTCAAAGATATTCCGAAATGTCGAGATTGGCGCCCAGAGTAGA
CGGGACCAAGAAAAATAGACTCTTGCTGGACCGTGTCTGGGGATTTGCTT
CTAGTCCAATGGGCCTACAGGTTTGTCTGTAGAACGAGACGGCTTGTTGC
GCGTGTGTGCCCTTCACGGTCGGTATTCAGAGGGACGTGCCGCCTTTGGC
GTTGGTTGTGTCCGGTTGCTAATCGTGATGGCCGTGTTGGCTGCTTCTAG
CTGATTGGTGTCGTGTTGTGTCGTGATCTATTGCCCACCCTCTCTCACAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1886:11796..14645-

>mRNA_Ecto-sp13_S_contig1886.5949.1 ID=mRNA_Ecto-sp13_S_contig1886.5949.1|Name=mRNA_Ecto-sp13_S_contig1886.5949.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=816bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1886:11796..14645- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGTACGAAGCGCGACAAAAACAGAACCAGCTGGGGCCGGGAGCGAACAA
GACTCGCTGCTTGGGGTGCAGAGCTTGGGGGCACATCGTGGCCAATTGTC
CAGAAGCGAAGGCTGCTACGGGCATCTGCTTCAACTGCGGATCCACCAAG
CACGCGCTGCGGGTGTGCCCCGCTCCGAAGCAGAAGGACGGAAGCCTGCC
CCACGCCACGTGCTTCGTCTGCAAGGCGAAGGGACACATCAGCGCGCACT
GCAAGCAGAACGCGAACGGCGTGTACCCCAAGGGCGGCTTTTGCAAGTGG
TGCGGCTCTAAGCACCACCTGTCGTGGGAATGCCCGGAGAGCACTAAGGT
GGACAAGAAGAAGCTCGACAAAAACGTTAAGAAGGACGACGCTGTCGGTA
CTGCCTCCGCCGACGACGTTGTTCCGGGCCCTAGCGATAGCGGCAAGGAC
AGAGGACCAGCATCCAAGGAGGCAAGAGGAGGCGGCGGCAAAGCAGAAAG
ATCTACCGGCGGCGGGGGTGCCGTGAACGGGGGGGCGGAAGAGGGTACCC
CGAAACGTCTCAGGACTATTGGCAGCTCTGGAGCGTCTAGCGCGAGAGGC
TCGAAGAGAGCACTGGCGTCGCGGATCGGAGGCGACGACCTCGAGGACGA
CGGCTACTACGACCCCGAGGACGTTCCCGACGCATCTTTCGAGCCCCCCG
ATGGGACGGAAGAGCAGCTCGGGTCGGGAAGTAGCGGTGGCGTTGCCCAC
CAACCATCGGGGAAAGGGGGATCGTCTGCCAAGAGGAAGTTGTCTTCCAA
GGTCGTTGTGTTTTGA
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