mRNA_Ecto-sp13_S_contig1886.5947.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1886.5947.1
Unique NamemRNA_Ecto-sp13_S_contig1886.5947.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1886.5947.1 vs. uniprot
Match: D8LFT6_ECTSI (Similar to A-kinase anchoring protein 18 gamma n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFT6_ECTSI)

HSP 1 Score: 531 bits (1367), Expect = 2.730e-188
Identity = 275/308 (89.29%), Postives = 282/308 (91.56%), Query Frame = 1
Query:  130 ARHGGGGAPRGYNRWAGASARPRGNATRPPRPTHFLSVRIDNPLIWAKLSTIQGDILAGNQNLTDAAIPVQASHLTLFVLTLSEKDGSLQQARDTLEQCGDLLLEHGLSPEVDLQASASSTESVADDGVHPAALGIGDSNETAPGAAAASPLTLSFRDLGNFRNKVLFAKLVEDEQATRLRGLASSLHRRFSEAGLVEEAAGFPSRKGGKRGDWDEGVGSGTSS--DSSEFTPHLTIMKTSKLRDRGTLIPADSYDRYQSGFVVGHHAPSSVELSSMLEKEDVPPLEGWEPRPYYKCEHRLGLCTPKV 1047
            ARHGGGGAPRG NRWAGASARPRGNA+RPPRPTHFLSVRIDNP IWAK+STIQGDILAGNQ+LTDAAIPVQASHLTLFVLTLSEKDGSLQQARDTLE CGDLLLEHGLSPEVDLQASAS  ESV DD +HPAAL IGDSNETAPG AAASPL LSFRDLG+FRNK+LFAKLVEDEQATRLRGLASSLHRRFSEAGLVEEAAGFPSRKG KRGD             DS EFTPHLTIMKTSKLRDRGTLIPADSYDRYQ+GFVVGHHAPSSVELSSMLEKEDVPPLEGWEPRPYYKCEHRLGLCTP V
Sbjct:   11 ARHGGGGAPRGRNRWAGASARPRGNASRPPRPTHFLSVRIDNPQIWAKISTIQGDILAGNQHLTDAAIPVQASHLTLFVLTLSEKDGSLQQARDTLEHCGDLLLEHGLSPEVDLQASASRAESVPDDHMHPAALAIGDSNETAPGVAAASPLMLSFRDLGHFRNKILFAKLVEDEQATRLRGLASSLHRRFSEAGLVEEAAGFPSRKGEKRGDXXXXXXXXXXXXXDSFEFTPHLTIMKTSKLRDRGTLIPADSYDRYQNGFVVGHHAPSSVELSSMLEKEDVPPLEGWEPRPYYKCEHRLGLCTPAV 318          
BLAST of mRNA_Ecto-sp13_S_contig1886.5947.1 vs. uniprot
Match: A0A6H5K2C7_9PHAE (AKAP7_NLS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2C7_9PHAE)

HSP 1 Score: 433 bits (1114), Expect = 1.770e-150
Identity = 224/242 (92.56%), Postives = 230/242 (95.04%), Query Frame = 1
Query:  322 DAAIPVQASHLTLFVLTLSEKDGSLQQARDTLEQCGDLLLEHGLSPEVDLQASASSTESVADDGVHPAALGIGDSNETAPGAAAASPLTLSFRDLGNFRNKVLFAKLVEDEQATRLRGLASSLHRRFSEAGLVEEAAGFPSRKGGKRGDWDEGVGSGTSSDSSEFTPHLTIMKTSKLRDRGTLIPADSYDRYQSGFVVGHHAPSSVELSSMLEKEDVPPLEGWEPRPYYKCEHRLGLCTPKV 1047
            DAAIPVQASHLTLFVL LSE+DGSLQQARDTLE CGDLLLEHGLSPEVDL ASASSTESV DDG+HPAALGIGDSNETAPGA AASPLTLSFRDLG+FRNKVLFAKLVEDEQATRLRGLASSLH+RFSEAGLVE AAGFPSRKGGKRGD   G GSGTSSDS EFTPHLTIMKTSKLRDRGTLIPADSYDRYQSGF+VGHHAPSSVELSSMLEKEDVPPLEGWEP+PYYKCEHRL LCTPKV
Sbjct:   35 DAAIPVQASHLTLFVLRLSEEDGSLQQARDTLEHCGDLLLEHGLSPEVDLPASASSTESVPDDGMHPAALGIGDSNETAPGATAASPLTLSFRDLGHFRNKVLFAKLVEDEQATRLRGLASSLHQRFSEAGLVEGAAGFPSRKGGKRGDG--GDGSGTSSDSFEFTPHLTIMKTSKLRDRGTLIPADSYDRYQSGFLVGHHAPSSVELSSMLEKEDVPPLEGWEPKPYYKCEHRLDLCTPKV 274          
BLAST of mRNA_Ecto-sp13_S_contig1886.5947.1 vs. uniprot
Match: UPI000F686529 (uncharacterized protein LOC113802659 n=1 Tax=Penaeus vannamei TaxID=6689 RepID=UPI000F686529)

HSP 1 Score: 71.6 bits (174), Expect = 1.740e-10
Identity = 69/273 (25.27%), Postives = 111/273 (40.66%), Query Frame = 1
Query:  217 PRPTHFLSVRIDNPLIWAKLSTIQGDILAGNQNLTDAAIPVQASHLTLFVLTLSEKDGSLQQARDTLEQCGDLLLEHGLSPEVDLQASASSTESVADDGVHPAALGIGDSNETAPGAAAASPLTLSFRDLGNFRNKVLFAKLVEDEQATRLRGLASSLHRRFSEAGLVEEAAGFPSRKGGKRGDWDEGVGSGTSSDSSEFTPHLTIMKTSKLRDRGTLIPAD-SYDRYQ--SGFVVGHHAPSSVELSSMLEKEDVPPLEGWEPRPYYKCEHRL 1026
            PRP +F+ +R+ +  I   +  IQ  I+A + NL  A I V +SH+T+ V+ + + D +L  A   L+ C D L E       D++ S                                 P+ ++F  +G+F ++V++A+L EDE   RL  LA  + + FS A +       P  K                       PHLTI K SK+R +    P + +   YQ       G  + S ++L SM   +D+          YY C + +
Sbjct:   67 PRPNYFVGIRVSDCEIHRTIVRIQEAIIASDSNLYQALIDVASSHITVLVMYI-DSDIALSVASSALDTCWDKLKE-------DIEES---------------------------------PIQMTFSGIGSFSDRVVYARLREDEHYFRLLKLAKEVRQIFSNASVC-----LPDEK--------------------PMQPHLTIAKMSKVRQKAGSFPRNINPAAYQPLKNIYFGCQSVSGLQLLSMTRPKDL--------ERYYYCANEI 265          
BLAST of mRNA_Ecto-sp13_S_contig1886.5947.1 vs. uniprot
Match: UPI001C713EEB (A-kinase anchor protein 7-like n=1 Tax=Penaeus japonicus TaxID=27405 RepID=UPI001C713EEB)

HSP 1 Score: 65.9 bits (159), Expect = 2.150e-8
Identity = 67/254 (26.38%), Postives = 101/254 (39.76%), Query Frame = 1
Query:  217 PRPTHFLSVRIDNPLIWAKLSTIQGDILAGNQNLTDAAIPVQASHLTLFVLTLSEKDGSLQQARDTLEQCGDLLLEHGLSPEVDLQASASSTESVADDGVHPAALGIGDSNETAPGAAAASPLTLSFRDLGNFRNKVLFAKLVEDEQATRLRGLASSLHRRFSEAGLVEEAAGFPSRKGGKRGDWDEGVGSGTSSDSSEFTPHLTIMKTSKLRDRGTLIPA--DSYDRYQ-SGFVVGHHAPSSVELSSMLEKED 969
            PRP +F+ +++ +  I   +  IQ  ++A +  L    I V +SH+TL V+ + + D +L  A   LE C D+L E                              IG             P+ ++F  +G+F ++V++AKL EDE   RL  LA  + R FS A +       P                    D     PHLTI K SK   +    P   D    Y   G  +G  A S ++L SM + +D
Sbjct:  109 PRPNYFVGIQVSDCEIHRAVVRIQEAVVAFDPLLYQTLIDVASSHITLLVMHI-DSDATLSIASSALETCWDILKED-----------------------------IGK-----------RPIKMTFSGIGSFSDRVIYAKLREDEHYLRLLRLAKDVRRVFSRASVC-----LP--------------------DDKPMQPHLTIAKMSKAGQKVADFPRKIDPVAYYSLKGIHLGCQAVSGLQLLSMTKPKD 296          
BLAST of mRNA_Ecto-sp13_S_contig1886.5947.1 vs. uniprot
Match: UPI001FB653E6 (uncharacterized protein LOC125045534 n=1 Tax=Penaeus chinensis TaxID=139456 RepID=UPI001FB653E6)

HSP 1 Score: 64.3 bits (155), Expect = 5.930e-8
Identity = 66/274 (24.09%), Postives = 109/274 (39.78%), Query Frame = 1
Query:  217 PRPTHFLSVRIDNPLIWAKLSTIQGDILAGNQNLTDAAIPVQASHLTLFVLTLSEKDGSLQQARDTLEQCGDLLLEHGLSPEVDLQASASSTESVADDGVHPAALGIGDSNETAPGAAAASPLTLSFRDLGNFRNKVLFAKLVEDEQATRLRGLASSLHRRFSEAGLVEEAAGFPSRKGGKRGDWDEGVGSGTSSDSSEFTPHLTIMKTSKLRDRGTLIPAD----SYDRYQSGFVVGHHAPSSVELSSMLEKEDVPPLEGWEPRPYYKCEHRL 1026
            PRP +F+ +R+ +  I   +  IQ  I+A + NL    I V +SH+T+ V+ + + D  L  A   L+ C D L E                                   +T  G     P+ ++F  +G+F ++V++A+L EDE   RL  LA  + + FS A +       P  K                       PHLTI K SK+  +    P      +Y  +++   +G  + S ++L SM + +D           YY C + +
Sbjct:   83 PRPNYFVGIRVSDCEIHRAIVRIQEAIIASDPNLYQTLIDVASSHITVLVMYI-DSDIGLSIASSALDTCWDRLKE-----------------------------------DTEKG-----PIQMTFSGIGSFSDRVVYARLREDEHYLRLLRLAKEVRQIFSSANVC-----LPDEK--------------------PMHPHLTIAKMSKVHQKAGGFPRKINPAAYQLFKN-IHLGCQSVSGLQLLSMTKPKDK--------ERYYYCANEI 281          
BLAST of mRNA_Ecto-sp13_S_contig1886.5947.1 vs. uniprot
Match: A0A8B6EAK2_MYTGA (AKAP7_NLS domain-containing protein n=2 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6EAK2_MYTGA)

HSP 1 Score: 64.7 bits (156), Expect = 8.360e-8
Identity = 65/252 (25.79%), Postives = 99/252 (39.29%), Query Frame = 1
Query:  220 RPTHFLSVRIDNPLIWAKLSTIQGDILAGNQNLTDAAIPVQASHLTLFVLTLSEKDGSLQQARDTLEQCGDLLLEHGLSPEVDLQASASSTESVADDGVHPAALGIGDSNETAPGAAAASPLTLSFRDLGNFRNKVLFAKLVEDEQATRLRGLASSLHRRFSEAGLVEEAAGFPSRKGGKRGDWDEGVGSGTSSDSSEFTPHLTIMKTSKLRDRGTLIP-ADSYDRYQSGFVVGHHAPSSVELSSMLEKEDV 972
            RPTHF+S++I NP I  K++ +Q ++   N+ L  A + +  +H+TL V  L  +D  L + + TL+ C    +E      +D+                                       L+FR +GNF N+V+FAKL  D+   RL+ L                A G P +  G+                  F PHLTI K ++L D   LI   D  D  +S         S +E+S      D+
Sbjct:   55 RPTHFISLQITNPEIITKIAEVQREMKKRNEILELAHVQLSCAHITLRVACLETED-DLNRMKKTLDDC----VEQFKKENMDI-------------------------------------FNLTFRGIGNFSNRVVFAKLQRDKNYFRLQRLGEMFE-------YCCRANGAPFKNEGR------------------FNPHLTIAKITQLEDWLELIEDEDDMDEEESIRFELCRGSSILEISPKSNTADI 239          
BLAST of mRNA_Ecto-sp13_S_contig1886.5947.1 vs. uniprot
Match: A0A4Y2R8J3_ARAVE (A-kinase anchor protein 7 isoforms delta and gamma n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2R8J3_ARAVE)

HSP 1 Score: 58.2 bits (139), Expect = 4.000e-6
Identity = 48/209 (22.97%), Postives = 81/209 (38.76%), Query Frame = 1
Query:  223 PTHFLSVRIDNPLIWAKLSTIQGDILAGNQNLTDAAIPVQASHLTLFVLTLSEKDG---SLQQARDTLEQCGDLLLEHGLSPEVDLQASASSTESVADDGVHPAALGIGDSNETAPGAAAASPLTLSFRDLGNFRNKVLFAKLVEDEQATRLRGLASSLHRRFSEAGLVEEAAGFPSRKGGKRGDWDEGVGSGTSSDSSEFTPHLTIMK 840
            P +F++V+I NP I   +  +Q  I+   ++L +        H+TL V+ +S++D    +L+   +  ++C +++                                               PL L F  LGNFR++VL+AK+  D+Q  RL  LA  + R F++  +                          S+D   F PHLTI K
Sbjct:   26 PNYFVAVQISNPRIHENVKRVQRHIVRQARSLHEYMNATPTLHITLMVINVSDRDTHERALKALHNVYDECNEVMCRE--------------------------------------------PLQLEFSGLGNFRDRVLYAKIRRDQQYRRLCSLAECVERHFAKVNIF-------------------------STDPRPFDPHLTIAK 165          
BLAST of mRNA_Ecto-sp13_S_contig1886.5947.1 vs. uniprot
Match: A0A7K8G040_9CORV (AKA7G protein (Fragment) n=11 Tax=Passeriformes TaxID=9126 RepID=A0A7K8G040_9CORV)

HSP 1 Score: 56.6 bits (135), Expect = 1.150e-5
Identity = 64/274 (23.36%), Postives = 101/274 (36.86%), Query Frame = 1
Query:  223 PTHFLSVRIDNPLIWAKLSTIQGDILAGNQNLTDAAIPVQASHLTLFVLTLSEKDGSLQQARDTLEQCGDLLLEHGLSPEVDLQASASSTESVADDGVHPAALGIGDSNETAPGAAAASPLTLSFRDLGNFRNKVLFAKLVEDEQATRLRGLASSLHRRFSEAGLVEEAAGFPSRKGGKRGDWDEGVGSGTSSDSSEFTPHLTIMKTSK---LRDRG-TLIPADSYDRYQSGFVVGHHAPSSVELSSMLEKEDVPPLEGWEPRPYYKCEHRLGL 1032
            P +F+++ I +  I  ++  +Q  I +   +L+ A +PVQ  HLT+ V  L  ++                                          V  A L +  S              L+F  +G F NKVL+AK++E++Q    R +A ++   F E  L                           S S +F PHLT +K SK   LR RG   I  D Y  Y+     G    S ++L +M +K+        +   YY CE  + +
Sbjct:   21 PNYFVAIPITDDQILDRIEDVQELIFSKEPDLSRALLPVQTMHLTIIVAHLGTEEE-----------------------------------------VKKAVLALKQSKTKVEDILQGKDFNLTFHGIGEFNNKVLYAKMLEEDQKMLSR-IAEAVEECFIEMNL-------------------------NISGSKDFKPHLTFLKLSKASRLRRRGFRKIRTDLYKEYEDSHF-GTEVFSRIDLCAMRKKK--------QESGYYYCECSINV 218          
BLAST of mRNA_Ecto-sp13_S_contig1886.5947.1 vs. uniprot
Match: UPI0015B254B1 (A-kinase anchor protein 7-like isoform X1 n=4 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015B254B1)

HSP 1 Score: 57.0 bits (136), Expect = 2.360e-5
Identity = 60/258 (23.26%), Postives = 103/258 (39.92%), Query Frame = 1
Query:  208 TRPPRPTHFLSVRIDNPLIWAKLSTIQGDILAGNQNLTDAAIPVQASHLTLFVLTLSEKDGSLQQARDTLEQCGDLLLEHGLSPEVDLQASASSTESVADDGVHPAALGIGDSNETAPGAAAASPLTLSFRDLGNFRNKVLFAKLVEDEQATRLRGLASSLHRRFSEAGLVEEAAGFPSRKGGKRGDWDEGVGSGTSSDSSEFTPHLTIMKTS----KLRDRGTLIPADSYDRYQSGFVVGHHAPSSVELSSMLEKED 969
            T+  RP +F++VRI +P I   +  +Q  IL  ++        +   H+TL V+ +++ +G+ ++A   L++      EH                                            PL + F+ LG+F N+VL+AK+  +    RLR L   + ++F+ A +V            KRG                F PHLTI K +    K R+   + P+  Y+ Y+  +  G  A  S++L  M   +D
Sbjct:  195 TKQQRPNYFVAVRISDPEICQAVKIVQEHILEADKKFESCMSLLPTLHVTLMVMRITD-EGTHKKALQALKKASQ---EHN-------------------------------------NLMCKEPLCIEFKGLGHFNNRVLYAKITNNNAFDRLRYLGECVEKQFAAASIVSSE---------KRG----------------FAPHLTIAKLNFAKKKHRNMKKIHPS-LYEAYKDIYF-GCQAVESMQLLKMTGPKD 384          
BLAST of mRNA_Ecto-sp13_S_contig1886.5947.1 vs. uniprot
Match: A0A0L8FJR9_OCTBM (AKAP7_NLS domain-containing protein n=3 Tax=Octopus TaxID=6643 RepID=A0A0L8FJR9_OCTBM)

HSP 1 Score: 55.8 bits (133), Expect = 6.750e-5
Identity = 45/158 (28.48%), Postives = 68/158 (43.04%), Query Frame = 1
Query:  583 LTLSFRDLGNFRNKVLFAKLVEDEQATRLRGLASSLHRRFSEAGLVEEAAGFPSRKGGKRGDWDEGVGSGTSSDSSEFTPHLTIMKTSKLRDRGTL------IPADSYDRYQSGFVVGHHAPSSVELSSMLEKEDVPPLEGWEPRPYYKCEHRLGLCT 1038
            L L  + LGNFRN V+FAK+   +   +L  +A  +  +F   GLV           GK+               S FTPH+T+MK S++  + T       I  D YD +   +  G     S++L SML+++ +          YY  EH +   T
Sbjct:  279 LKLPLQGLGNFRNSVVFAKVQPGDHVAKLEEIAEEIQAQFFAEGLV-----------GKQ---------------SNFTPHVTVMKLSRVGKKLTKKTGLKKIYPDVYDEFIDSYF-GCQPVGSIQLCSMLKQKGI--------SGYYHIEHEIYFGT 401          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1886.5947.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D8LFT6_ECTSI2.730e-18889.29Similar to A-kinase anchoring protein 18 gamma n=1... [more]
A0A6H5K2C7_9PHAE1.770e-15092.56AKAP7_NLS domain-containing protein n=1 Tax=Ectoca... [more]
UPI000F6865291.740e-1025.27uncharacterized protein LOC113802659 n=1 Tax=Penae... [more]
UPI001C713EEB2.150e-826.38A-kinase anchor protein 7-like n=1 Tax=Penaeus jap... [more]
UPI001FB653E65.930e-824.09uncharacterized protein LOC125045534 n=1 Tax=Penae... [more]
A0A8B6EAK2_MYTGA8.360e-825.79AKAP7_NLS domain-containing protein n=2 Tax=Mytilu... [more]
A0A4Y2R8J3_ARAVE4.000e-622.97A-kinase anchor protein 7 isoforms delta and gamma... [more]
A0A7K8G040_9CORV1.150e-523.36AKA7G protein (Fragment) n=11 Tax=Passeriformes Ta... [more]
UPI0015B254B12.360e-523.26A-kinase anchor protein 7-like isoform X1 n=4 Tax=... [more]
A0A0L8FJR9_OCTBM6.750e-528.48AKAP7_NLS domain-containing protein n=3 Tax=Octopu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1886contigEcto-sp13_S_contig1886:4483..6364 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score540.0
Seed ortholog evalue8e-151
Seed eggNOG ortholog2880.D8LFT6
Preferred nameAKAP7
Model size1052
KEGG koko:K16524,ko:K18666
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0001508,GO:0003674,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0005886,GO:0006810,GO:0006811,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007178,GO:0008022,GO:0008104,GO:0008144,GO:0008150,GO:0009719,GO:0009966,GO:0009987,GO:0010033,GO:0010243,GO:0010646,GO:0010738,GO:0010959,GO:0012505,GO:0014070,GO:0014074,GO:0016020,GO:0016208,GO:0016324,GO:0016328,GO:0016528,GO:0016529,GO:0017076,GO:0019899,GO:0019900,GO:0019901,GO:0019904,GO:0022898,GO:0023051,GO:0023052,GO:0030133,GO:0030315,GO:0030554,GO:0031410,GO:0031982,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032553,GO:0032555,GO:0032559,GO:0032879,GO:0032947,GO:0032991,GO:0033036,GO:0034237,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035556,GO:0036094,GO:0042221,GO:0042383,GO:0042391,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043266,GO:0043268,GO:0043269,GO:0043270,GO:0044093,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0045177,GO:0046683,GO:0048518,GO:0048522,GO:0048583,GO:0050789,GO:0050794,GO:0050896,GO:0051018,GO:0051049,GO:0051050,GO:0051179,GO:0051234,GO:0051591,GO:0051716,GO:0060306,GO:0065007,GO:0065008,GO:0065009,GO:0070382,GO:0070887,GO:0071310,GO:0071320,GO:0071407,GO:0071417,GO:0071495,GO:0071944,GO:0097159,GO:0097367,GO:0097708,GO:0098590,GO:0099053,GO:0099503,GO:1901016,GO:1901018,GO:1901265,GO:1901363,GO:1901379,GO:1901381,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902259,GO:1902261,GO:1902531,GO:1903818,GO:1904062,GO:1904064,GO:2001257,GO:2001259
Exons5
EggNOG free text desc.positive regulation of delayed rectifier potassium channel activity
EggNOG OGsKOG2814@1,KOG2814@2759
Ec32 ortholog descriptionRNA ligase/cyclic nucleotide phosphodiesterase
Ec32 orthologEc-01_000990.1
Cds size1050
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462963.3531601-CDS-Ecto-sp13_S_contig1886:4482..51331681462963.3531601-CDS-Ecto-sp13_S_contig1886:4482..5133Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1886 4483..5133 -
1681462963.3685358-CDS-Ecto-sp13_S_contig1886:5376..55021681462963.3685358-CDS-Ecto-sp13_S_contig1886:5376..5502Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1886 5377..5502 -
1681462963.3792853-CDS-Ecto-sp13_S_contig1886:5861..60041681462963.3792853-CDS-Ecto-sp13_S_contig1886:5861..6004Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1886 5862..6004 -
1681462963.3907394-CDS-Ecto-sp13_S_contig1886:6223..62791681462963.3907394-CDS-Ecto-sp13_S_contig1886:6223..6279Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1886 6224..6279 -
1681462963.3992295-CDS-Ecto-sp13_S_contig1886:6290..63641681462963.3992295-CDS-Ecto-sp13_S_contig1886:6290..6364Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1886 6291..6364 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1886.5947.1prot_Ecto-sp13_S_contig1886.5947.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1886 4483..6364 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1886.5947.1

>prot_Ecto-sp13_S_contig1886.5947.1 ID=prot_Ecto-sp13_S_contig1886.5947.1|Name=mRNA_Ecto-sp13_S_contig1886.5947.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=350bp
LVSSTIYLPYLRNPSRTTPKQLQLLSPVRKSGSGYHVSTSSHKARHGGGG
APRGYNRWAGASARPRGNATRPPRPTHFLSVRIDNPLIWAKLSTIQGDIL
AGNQNLTDAAIPVQASHLTLFVLTLSEKDGSLQQARDTLEQCGDLLLEHG
LSPEVDLQASASSTESVADDGVHPAALGIGDSNETAPGAAAASPLTLSFR
DLGNFRNKVLFAKLVEDEQATRLRGLASSLHRRFSEAGLVEEAAGFPSRK
GGKRGDWDEGVGSGTSSDSSEFTPHLTIMKTSKLRDRGTLIPADSYDRYQ
SGFVVGHHAPSSVELSSMLEKEDVPPLEGWEPRPYYKCEHRLGLCTPKV*
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mRNA from alignment at Ecto-sp13_S_contig1886:4483..6364-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1886.5947.1 ID=mRNA_Ecto-sp13_S_contig1886.5947.1|Name=mRNA_Ecto-sp13_S_contig1886.5947.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1882bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1886:4483..6364- (Ectocarpus species13 EcNAP12_S_4_19m)
TTGGTGTCCTCCACCATCTATCTGCCGTATCTCCGTAACCCGTCTCGCAC TACTCCCAAGCAACTGCAACTGTTGTGACCGTAAGGTCGCCCGTACGCAA GAGCGGGAGCGGATACCACGTCTCAACCTCGAGCCATAAGGGTGCGTTTG GAGGTGACCGACTTCGCGATTGATGGGTAGTTTGCATGTCGATATGGACC AAAATATTCAGCGCGCCTCTTCGTTCATCTTTGAACTCAAGTTTGCGCAT GTTTATTCGTCGTCGCTGCGATGTATCCCGCCAGGCGCACCTAATCGCGT AACAGGAGCATAAGTCAGCAGATTCGTGGATGATTTCGTCGTTTGTACTG TACATGGCAGCAAGACACGGAGGCGGCGGAGCTCCTCGAGGATACAACCG ATGGGCCGGAGCATCGGCAAGGCCACGCGGGAATGCCACTCGACCGCCTC GGCCCACCCACTTCCTGTCGGTACGGATCGACAATCCGCTGATATGGGCA AAGGTGAGTGCCACAGCAGTGCAGTAGTGCCCTGTCTTCTTGTAGCTTGT TCATCCGTATGACTTGTATGGAGGCTGAGCTGCGGTCTCGTTGAAAGAGA CGTCGCGCATCAATACCAGTACAGGCCCTCAGATAAGAAACGTCAACTCC GGGTCGACATTTGTAATTTTCTGCAAAGGGTTTCCTGCGCAAATGCTGTA TGTATGATTGTGCGGGATCCACCGCTGAACAATGTTGCTTACAAAGGAGA TCTACTTTCTTTATACGTGGAAATCTGAGCCTCCGTTCCTGAACAAAAAT GTTTCTCAACTGCGGTCCTGCCGTCACGTTGTCAATCTTTTTGTCGCTCG ATGAAACCTTAGTTATCAACCATCCAGGGTGACATCTTGGCCGGAAACCA GAACCTGACAGACGCGGCAATCCCTGTCCAAGCCTCGCACCTGACGCTCT TCGTGCTGACGCTAAGCGAGAAAGACGGTAGCCTGCAGGTGAATTGAAGA TCGCGATACCGTCGGATAGCCACACACGGTCGATACATTCAATAACATAC GCTTCACAGTTAGTTGTACGGGAGAGTGAAAACATTGTTGGATCAACAAC AACGACACGAAATTTTCCCAAGCGTCCTCCCGCGTGGTGCATCGGTACCC GACTCCAGAGTACTCGTATCCATATCACCAGTTTCTTTTTCTTTTGAGCC AAGCATCACAGCGTTCGTCTTCTGACTGCAGCAAGCCAGAGATACCCTCG AACAATGCGGAGACCTCCTGCTGGAGCACGGCCTCTCCCCCGAAGTCGAC CTGCAGGCATCAGCCAGCAGCACAGAGAGCGTGGCTGATGATGGTGTGCA TCCGGCTGCTCTTGGCATAGGGGACAGCAACGAGACAGCGCCGGGGGCAG CGGCGGCCTCACCCTTGACGCTCTCCTTCCGAGACCTCGGTAACTTTAGG AACAAGGTTTTGTTCGCAAAGCTTGTGGAAGACGAGCAAGCGACCAGGCT CAGGGGGTTGGCGTCCTCGCTCCACCGACGGTTTTCCGAGGCCGGTCTCG TGGAAGAAGCCGCGGGTTTTCCAAGCCGTAAGGGTGGGAAGAGGGGCGAC TGGGACGAGGGCGTCGGCAGCGGCACCAGCAGCGACAGCTCCGAGTTCAC GCCTCACCTCACAATCATGAAGACTTCGAAGCTCAGGGATAGGGGTACCT TGATACCGGCCGATTCGTACGACCGGTATCAGAGCGGTTTCGTTGTCGGC CATCACGCACCGTCCAGCGTCGAACTGTCGAGCATGCTTGAGAAGGAAGA TGTGCCGCCTTTGGAGGGTTGGGAGCCCAGACCGTACTACAAGTGCGAGC ACAGGCTCGGTCTCTGCACCCCAAAGGTGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1886:4483..6364-

>mRNA_Ecto-sp13_S_contig1886.5947.1 ID=mRNA_Ecto-sp13_S_contig1886.5947.1|Name=mRNA_Ecto-sp13_S_contig1886.5947.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1050bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1886:4483..6364- (Ectocarpus species13 EcNAP12_S_4_19m)
TTGGTGTCCTCCACCATCTATCTGCCGTATCTCCGTAACCCGTCTCGCAC
TACTCCCAAGCAACTGCAACTGTTGTCGCCCGTACGCAAGAGCGGGAGCG
GATACCACGTCTCAACCTCGAGCCATAAGGCAAGACACGGAGGCGGCGGA
GCTCCTCGAGGATACAACCGATGGGCCGGAGCATCGGCAAGGCCACGCGG
GAATGCCACTCGACCGCCTCGGCCCACCCACTTCCTGTCGGTACGGATCG
ACAATCCGCTGATATGGGCAAAGTTATCAACCATCCAGGGTGACATCTTG
GCCGGAAACCAGAACCTGACAGACGCGGCAATCCCTGTCCAAGCCTCGCA
CCTGACGCTCTTCGTGCTGACGCTAAGCGAGAAAGACGGTAGCCTGCAGC
AAGCCAGAGATACCCTCGAACAATGCGGAGACCTCCTGCTGGAGCACGGC
CTCTCCCCCGAAGTCGACCTGCAGGCATCAGCCAGCAGCACAGAGAGCGT
GGCTGATGATGGTGTGCATCCGGCTGCTCTTGGCATAGGGGACAGCAACG
AGACAGCGCCGGGGGCAGCGGCGGCCTCACCCTTGACGCTCTCCTTCCGA
GACCTCGGTAACTTTAGGAACAAGGTTTTGTTCGCAAAGCTTGTGGAAGA
CGAGCAAGCGACCAGGCTCAGGGGGTTGGCGTCCTCGCTCCACCGACGGT
TTTCCGAGGCCGGTCTCGTGGAAGAAGCCGCGGGTTTTCCAAGCCGTAAG
GGTGGGAAGAGGGGCGACTGGGACGAGGGCGTCGGCAGCGGCACCAGCAG
CGACAGCTCCGAGTTCACGCCTCACCTCACAATCATGAAGACTTCGAAGC
TCAGGGATAGGGGTACCTTGATACCGGCCGATTCGTACGACCGGTATCAG
AGCGGTTTCGTTGTCGGCCATCACGCACCGTCCAGCGTCGAACTGTCGAG
CATGCTTGAGAAGGAAGATGTGCCGCCTTTGGAGGGTTGGGAGCCCAGAC
CGTACTACAAGTGCGAGCACAGGCTCGGTCTCTGCACCCCAAAGGTGTAG
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