mRNA_Ecto-sp13_S_contig18854.5944.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18854.5944.1
Unique NamemRNA_Ecto-sp13_S_contig18854.5944.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig18854.5944.1 vs. uniprot
Match: D7FTM3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTM3_ECTSI)

HSP 1 Score: 267 bits (683), Expect = 2.360e-87
Identity = 128/135 (94.81%), Postives = 132/135 (97.78%), Query Frame = 1
Query:    1 DIWRVWSAAKSGEDKRLSYMLSLPRASVDARDPDSGWTALHFASRQGKLATVRVLIENQAFVGARAPGGRTPLHHAAGWGTYEVCFALLQAGADKTARDSEGQTAQHLAECRQRGKVVTLLDGWRPLGLTATQTQ 405
            D+W VWSAAKSGEDKRLSYMLSLPRA+VDARDPDSGWTALHFASRQGKLATVRVLIENQAFVGARAPGGRTPLH AAGWGTYEVCFALLQAGADKTARDS+G+TAQHLAE RQRGKVVTLLDGWRPLGLTATQTQ
Sbjct:   16 DVWSVWSAAKSGEDKRLSYMLSLPRANVDARDPDSGWTALHFASRQGKLATVRVLIENQAFVGARAPGGRTPLHLAAGWGTYEVCFALLQAGADKTARDSKGETAQHLAEYRQRGKVVTLLDGWRPLGLTATQTQ 150          
BLAST of mRNA_Ecto-sp13_S_contig18854.5944.1 vs. uniprot
Match: A0A7S1UK03_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UK03_9STRA)

HSP 1 Score: 111 bits (278), Expect = 8.890e-27
Identity = 59/131 (45.04%), Postives = 81/131 (61.83%), Query Frame = 1
Query:    1 DIWRVWSAAKSGEDKRLSYML-SLPRASVDARDPDSGWTALHFASRQGKLATVRVLIENQAFVGARAPGGRTPLHHAAGWGTYEVCFALLQAGADKTARDSEGQTAQHLAECRQRGKVVTLLDGWRPLGLT 390
            D   VW AAK GE +RL  +L    R     RDP++G+TALH+A+R G+L   ++L++  A V AR    RTPLH AAGWGT +V   L+ +GAD T  D+ G TA  LAE  +R  +  ++D W P+G+T
Sbjct:  162 DATTVWYAAKVGELERLEAILHGRGRDMAMKRDPENGYTALHYAARGGRLECAKLLLDFGADVNARGTDSRTPLHLAAGWGTQQVVVYLMGSGADATWPDATGVTAARLAEQAERFAIADVIDRWLPVGIT 292          
BLAST of mRNA_Ecto-sp13_S_contig18854.5944.1 vs. uniprot
Match: A0A7S3UV55_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UV55_HETAK)

HSP 1 Score: 94.0 bits (232), Expect = 3.630e-21
Identity = 51/129 (39.53%), Postives = 69/129 (53.49%), Query Frame = 1
Query:   13 VWSAAKSGEDKRLSYMLSLPRASVDARDPDSGWTALHFASRQGKLATVRVLIENQAFVGARAPGGRTPLHHAAGWGTYEVCFALLQAGADKTARDSEGQTAQHLAECRQRGKVVTLLDGWRPLGLTATQ 399
            +W AA +    RL  +   P   VD RDPDSG TAL  A+R G  A V+ L    A    + P G TPL  AA +G+  +   +L+AG DKT ++S G+    +A  R R  VV LL+ W P+G T  +
Sbjct:    1 IWYAAANNSFDRLEKLRDRPNFRVDERDPDSGQTALALAARNGHEAMVQELFRLGADPNRQDPNGNTPLFAAAAFGSTRIVALMLEAGGDKTMKNSVGEQPSDVARKRLRFDVVKLLEWWNPVGYTVEE 129          
BLAST of mRNA_Ecto-sp13_S_contig18854.5944.1 vs. uniprot
Match: A0A4C1UCU8_EUMVA (Ankyrin repeat domain-containing protein 39 n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1UCU8_EUMVA)

HSP 1 Score: 79.0 bits (193), Expect = 5.960e-16
Identity = 45/109 (41.28%), Postives = 68/109 (62.39%), Query Frame = 1
Query:   13 VWSAAKSGEDKRLSYMLSL---PRASVDARDPDSGWTALHFASRQGKLATVRVLIENQAFVGARAPGGR-TPLHHAAGWGTYEVCFALLQAGADKTARDSEGQTAQHLA 327
            +W AA SG++KR+  ++S    PR  V A D +SG+TALH+A+R G L   + L++N A + A    G+ TPL  AA  G  +V   L++AGA+   +D++G+TA H A
Sbjct:    7 IWFAASSGDEKRVESLISKSKNPREVVTAVD-NSGYTALHYAARNGYLEICQCLVKNGAIIDAVTKSGKATPLQRAATAGKIDVVVYLIEAGANPLLQDADGKTALHRA 114          
BLAST of mRNA_Ecto-sp13_S_contig18854.5944.1 vs. uniprot
Match: S4PMZ1_9NEOP (Ankyrin repeat domain-containing protein 39 (Fragment) n=2 Tax=Pararge aegeria TaxID=116150 RepID=S4PMZ1_9NEOP)

HSP 1 Score: 72.8 bits (177), Expect = 1.100e-13
Identity = 43/123 (34.96%), Postives = 74/123 (60.16%), Query Frame = 1
Query:   13 VWSAAKSGEDKRLSYMLSL---PRASVDARDPDSGWTALHFASRQGKLATVRVLIENQAFVGARAPGGR-TPLHHAAGWGTYEVCFALLQAGADKTARDSEGQTAQH-LAECRQRGKVVTLLD 366
            +W+AA SGE  R+  ++S    P+  V+++D +SG+TALH+A+R G +    +L++N A++  +   G+ TPLH AA  G       L+Q  A    +D++G+TA H + E ++ G +  LL+
Sbjct:    7 IWNAAFSGEKDRVLSLISKASSPKELVNSQD-NSGYTALHYAARNGHVDICSILLKNGAYINTQTRCGKATPLHKAAAAGKEATVKYLIQHRAQLDLQDADGKTALHKVVENKKHGLINVLLE 128          
BLAST of mRNA_Ecto-sp13_S_contig18854.5944.1 vs. uniprot
Match: A0A6J1NDD5_BICAN (ankyrin repeat domain-containing protein 39-like isoform X1 n=1 Tax=Bicyclus anynana TaxID=110368 RepID=A0A6J1NDD5_BICAN)

HSP 1 Score: 71.6 bits (174), Expect = 5.750e-13
Identity = 46/123 (37.40%), Postives = 69/123 (56.10%), Query Frame = 1
Query:   13 VWSAAKSGEDKRLSYMLSL---PRASVDARDPDSGWTALHFASRQGKLATVRVLIENQAFVGARAP-GGRTPLHHAAGWGTYEVCFALLQAGADKTARDSEGQTAQH-LAECRQRGKVVTLLD 366
            +W+AA SGE  R+  +++    P+  V++ D  SG+TALH+A+R G +    +L+EN A +      G  TPLH AA  G  E    L+Q GA    +D++G TA H + E + +  V  LLD
Sbjct:   33 IWNAAFSGETDRVQSLINKSRNPKDLVNSEDK-SGYTALHYAARNGHVDICSILVENGACINYPTRCGNATPLHKAAAAGKEETVKYLIQHGALLDLQDADGTTALHKVVENKNQNLVKILLD 154          
BLAST of mRNA_Ecto-sp13_S_contig18854.5944.1 vs. uniprot
Match: UPI0015518DB9 (ankyrin repeat domain-containing protein n=1 Tax=Caenimonas soli TaxID=2735555 RepID=UPI0015518DB9)

HSP 1 Score: 72.0 bits (175), Expect = 9.540e-13
Identity = 38/87 (43.68%), Postives = 50/87 (57.47%), Query Frame = 1
Query:  103 SGWTALHFASRQGKLATVRVLIENQAFVGARAPGGRTPLHHAAGWGTYEVCFALLQAGADKTARDSEGQTAQHLAECRQRGKVVTLL 363
            +GWT LH+AS  G LA + +L+EN A++ A +P G TPL  AA +GT      LL+AGAD   R+  G TA   A    R   V L+
Sbjct:  120 TGWTPLHYASTNGHLAIMELLLENHAYIDAESPNGSTPLMMAAHYGTPAAVKLLLEAGADPMLRNQLGLTAIDFAHRANRKDSVDLI 206          
BLAST of mRNA_Ecto-sp13_S_contig18854.5944.1 vs. uniprot
Match: A0A8K0DCE8_9COLE (Uncharacterized protein n=1 Tax=Ignelater luminosus TaxID=2038154 RepID=A0A8K0DCE8_9COLE)

HSP 1 Score: 69.7 bits (169), Expect = 3.960e-12
Identity = 42/114 (36.84%), Postives = 64/114 (56.14%), Query Frame = 1
Query:   13 VWSAAKSGEDKRLSYMLSLPRASVDARDPDSGWTALHFASRQGKLATVRVLIENQAFVGARAPGGR-TPLHHAAGWGTYEVCFALLQAGADKTARDSEGQTAQHLAECRQRGKV 351
            +W AA+ G+ K++  +LS    +VD RD  +G+TALH+A+R G L   +VL+ N A + +    GR T LH A       +   LL+  A+   RDS+G+TA H A   Q  ++
Sbjct:   37 IWYAAQCGDTKKVEKLLS-QGTNVDQRD-SAGYTALHYAARNGHLDVCKVLLRNGADINSTTKSGRATALHRACSADKVHMVKFLLENKANGKIRDSDGKTALHRAAESQNKEI 148          
BLAST of mRNA_Ecto-sp13_S_contig18854.5944.1 vs. uniprot
Match: UPI00096B4C65 (ankyrin repeat domain-containing protein 39 isoform X1 n=1 Tax=Aethina tumida TaxID=116153 RepID=UPI00096B4C65)

HSP 1 Score: 68.2 bits (165), Expect = 8.160e-12
Identity = 43/120 (35.83%), Postives = 63/120 (52.50%), Query Frame = 1
Query:   13 VWSAAKSGEDKRLSYMLSLPRASVDARDPDSGWTALHFASRQGKLATVRVLIENQAFVGARAPGGR-TPLHHAAGWGTYEVCFALLQAGADKTARDSEGQTAQHLAECRQRGKVVTLLDG 369
            +WSAA  GE  ++   L   +  V+  D   G+TALH+A+R G+L   + L++  A V  +    R TPLH A   G   V   LL  GAD + RDS+G+ A   A+   R  ++ +L G
Sbjct:   33 IWSAAMYGEIDKIKKCLD--KTDVNTTDK-YGFTALHYAARNGQLEACKYLVKRGANVNVQTKELRATPLHRAVSVGHQAVVEYLLSVGADASIRDSDGKLAVDRAKDNGRATIMAVLQG 149          
BLAST of mRNA_Ecto-sp13_S_contig18854.5944.1 vs. uniprot
Match: UPI001CF722AB (ankyrin repeat domain-containing protein 39-like n=1 Tax=Tribolium madens TaxID=41895 RepID=UPI001CF722AB)

HSP 1 Score: 70.1 bits (170), Expect = 1.010e-11
Identity = 44/118 (37.29%), Postives = 67/118 (56.78%), Query Frame = 1
Query:   13 VWSAAKSGEDKRLSYMLSLPRASVDARDPDSGWTALHFASRQGKLATVRVLIENQAFVGA-RAPGGRTPLHHAAGWGTYEVCFALLQAGADKTARDSEGQTAQHLAECRQRGKVVTLL 363
            +WSAA+ G+  R  ++L+     VD RD  +G+TALH+A+R G L   R+LI+    V A    G  TPLH AA  G +E+   LL+  A+   +D++G+TA H A   +  ++   L
Sbjct:  127 LWSAAQYGDLDRTLHLLN-KGFRVDQRDA-AGYTALHYAARNGHLDVCRLLIDRGGCVDAVTCQGKATPLHRAATVGKFEIVKFLLEKKANCRLKDADGKTALHRAAASKHLQICEYL 242          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18854.5944.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTM3_ECTSI2.360e-8794.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1UK03_9STRA8.890e-2745.04Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S3UV55_HETAK3.630e-2139.53Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A4C1UCU8_EUMVA5.960e-1641.28Ankyrin repeat domain-containing protein 39 n=1 Ta... [more]
S4PMZ1_9NEOP1.100e-1334.96Ankyrin repeat domain-containing protein 39 (Fragm... [more]
A0A6J1NDD5_BICAN5.750e-1337.40ankyrin repeat domain-containing protein 39-like i... [more]
UPI0015518DB99.540e-1343.68ankyrin repeat domain-containing protein n=1 Tax=C... [more]
A0A8K0DCE8_9COLE3.960e-1236.84Uncharacterized protein n=1 Tax=Ignelater luminosu... [more]
UPI00096B4C658.160e-1235.83ankyrin repeat domain-containing protein 39 isofor... [more]
UPI001CF722AB1.010e-1137.29ankyrin repeat domain-containing protein 39-like n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18854contigEcto-sp13_S_contig18854:1873..3365 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score265.4
Seed ortholog evalue1.5e-68
Seed eggNOG ortholog2880.D7FTM3
Model size405
KEGG koko:K09258,ko:K21435
KEGG Pathwayko04668,map04668
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG0504@2759
Cds size405
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03000,ko03036,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462963.1555321-CDS-Ecto-sp13_S_contig18854:1872..19191681462963.1555321-CDS-Ecto-sp13_S_contig18854:1872..1919Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18854 1873..1919 +
1681462963.1715665-CDS-Ecto-sp13_S_contig18854:2587..27891681462963.1715665-CDS-Ecto-sp13_S_contig18854:2587..2789Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18854 2588..2789 +
1681462963.1800365-CDS-Ecto-sp13_S_contig18854:3209..33651681462963.1800365-CDS-Ecto-sp13_S_contig18854:3209..3365Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18854 3210..3365 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18854.5944.1prot_Ecto-sp13_S_contig18854.5944.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18854 1873..3365 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18854.5944.1

>prot_Ecto-sp13_S_contig18854.5944.1 ID=prot_Ecto-sp13_S_contig18854.5944.1|Name=mRNA_Ecto-sp13_S_contig18854.5944.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=135bp
DIWRVWSAAKSGEDKRLSYMLSLPRASVDARDPDSGWTALHFASRQGKLA
TVRVLIENQAFVGARAPGGRTPLHHAAGWGTYEVCFALLQAGADKTARDS
EGQTAQHLAECRQRGKVVTLLDGWRPLGLTATQTQ
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mRNA from alignment at Ecto-sp13_S_contig18854:1873..3365+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18854.5944.1 ID=mRNA_Ecto-sp13_S_contig18854.5944.1|Name=mRNA_Ecto-sp13_S_contig18854.5944.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1493bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18854:1873..3365+ (Ectocarpus species13 EcNAP12_S_4_19m)
GATATCTGGAGGGTGTGGTCTGCGGCAAAGTCTGGAGAAGACAAGAGGTC TGTTTCGTTCGGCATGGCATGCGTGTCGTGGGAAGCGCTGTTGGTGGGGC AGTGAGAATTTTTTTTCCGGAGGCCACTGATCACAACCAATGGAGGTAGG AGACAGCAATGACACGTGTCTAGAGCGGGGCAACAACCACCACGAACGAA GAGCCGCATTCCCGACAACTGGCGTCACCTGACGGGAGGCTAGACGTACA GAACGATTCTCTTATTGGCCGTCTTTGATGTTCTTCTGGGGCCTAGAAAA GATACCGCGGAGTACAGAGACGAGCAATCCCCGCTTGGTCGTTAGCTGCC TTCAGACCAGAATCGCAGGGATAACATGTGGCAAAAATACTTCATGTAGA CGTTGGCAAGTGGTACGTTAACACTTGTCTGCTGAAGCGTGGGTCACTTT TGCTTGGCTGTTTCCCCGACATTGGCATTCGACGGCTCTGGATGAACCGG AGAATTGTTGTGTGTCGAACCGAGAAGGTTGGCGAATCACTTGGAAATTT ATTCTCTAGAACATGCAATGATACCGCTCAATGTGTTGTAACCGATTTCA GCACACGTGTTGCGCAGCCACTCGCCAACCTTCGTCGCAAACCACCAACA TCACATCACCCCCTCAACTCGCTTGAATTTGCTCTGCCTCTCATACACCG CACGCCGCTCTCCAGGCTGTCCTACATGCTTTCCTTGCCCCGTGCGAGCG TTGACGCACGGGACCCGGATTCGGGCTGGACTGCTTTGCACTTCGCCTCC AGGCAAGGGAAGCTCGCCACGGTCAGGGTTTTGATAGAGAACCAGGCGTT CGTCGGGGCGAGGGCGCCGGGCGGGAGGACTCCGCTTCACCATGCTGCCG GGTGGGGAACCTATGAGGTAGGTGCTAAGGTCGCAGAGGGAGACAGACAC ACACATATATATATATATATCGTGCGTTGGCTACTGCATGCGGACACATA CGGGGCGTTGGCTACTGCATGTGGACATCAACGGGAAAAGCGTGTGCATC GAACTATTGGTTGTGAAGGAACGGCTGGGAAAAGGGTAGTGGGCGGCGAA ATCATGGGACTGAGTCGGGCTATCATGGTCGCGATCTCCAGCTCAGACCC GTGCGTCGTTCCTTTGTCTGGCTCGATCATTTACGCGTGGCGACCGTTGT TGAGATGATCATTCAGTTCAAAGGGCTCCCGTGCAGAGTCCCACACAAAA CAAAAAGCACTCGCCAGGGTAACAGCCCGAAAGGGGGGCATCAAGGTTGC ACTTGGCCGTCGCTCCACCACCGGCCATCGTCATCAGGTGTGCTTCGCTC TCCTTCAGGCGGGAGCCGACAAGACGGCAAGAGACAGCGAGGGACAAACC GCGCAACATCTCGCAGAATGTCGACAAAGAGGCAAGGTCGTCACTCTCCT GGACGGTTGGAGGCCGCTGGGTTTGACGGCCACTCAGACGCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18854:1873..3365+

>mRNA_Ecto-sp13_S_contig18854.5944.1 ID=mRNA_Ecto-sp13_S_contig18854.5944.1|Name=mRNA_Ecto-sp13_S_contig18854.5944.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=405bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18854:1873..3365+ (Ectocarpus species13 EcNAP12_S_4_19m)
GATATCTGGAGGGTGTGGTCTGCGGCAAAGTCTGGAGAAGACAAGAGGCT
GTCCTACATGCTTTCCTTGCCCCGTGCGAGCGTTGACGCACGGGACCCGG
ATTCGGGCTGGACTGCTTTGCACTTCGCCTCCAGGCAAGGGAAGCTCGCC
ACGGTCAGGGTTTTGATAGAGAACCAGGCGTTCGTCGGGGCGAGGGCGCC
GGGCGGGAGGACTCCGCTTCACCATGCTGCCGGGTGGGGAACCTATGAGG
TGTGCTTCGCTCTCCTTCAGGCGGGAGCCGACAAGACGGCAAGAGACAGC
GAGGGACAAACCGCGCAACATCTCGCAGAATGTCGACAAAGAGGCAAGGT
CGTCACTCTCCTGGACGGTTGGAGGCCGCTGGGTTTGACGGCCACTCAGA
CGCAG
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