mRNA_Ecto-sp13_S_contig10642.594.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10642.594.1
Unique NamemRNA_Ecto-sp13_S_contig10642.594.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10642.594.1 vs. uniprot
Match: A0A6H5KUE0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KUE0_9PHAE)

HSP 1 Score: 648 bits (1672), Expect = 1.330e-228
Identity = 348/376 (92.55%), Postives = 354/376 (94.15%), Query Frame = 1 
Query:    1 DTRLGAKQEKIRVHEIGVIERFATVVSALDGSLEPREGDEFLAWLRSQGFDDAPPTPQPGGGXXXXXXGTATGTKVENKGNNRKREGGAAEERAEVEAFLSAASARLNALVADKEDALFGDRGEAEAEESLQAKGERGGEGGAVAAGSDASGEPVVSPNMSDEDLYQAKLGAHRAMLCHFLSLLSSSLGKQQLKTGLSLGEVVAATRSAYLAVPEDRLAAVYPLFDTHGDGHLDAESADLAVDAVVLSVTAASERCYAAAARPALDKKTAAVMPATMKYVLWDVMEIPMKRRCSFAWAEDRKQVGPDEWRVGWEQFAPSRRQHFPEMDSVARNYVAEFSRRRSAWHTSRKGRKEAMVYGSALFVAVLFIDNLLKMV 1128
            DTRLGAKQEKIRVHEIGVIERFA VVSALDGSLEPREGDEFLAWLRSQGFDDA PTPQPGGG XXXXX TA GTKVENK +N K EGGAAEERAEVEAFLSAASARLNALV DKEDALFGDRGEAEAEESLQAKGERGG       G DASGEPVVSPNMSDEDLYQA+LGAHRAMLCHFLSLLSSSLGKQQLKTGLSLGEVVAATRSAYLA PEDRLAAVYPLFDTHGDGHLD ES DLAVDAVVLSVTAASERCYAAAARPALDKKTAAVMPATMKYVLWDVME+PMKRRCSFAWAE+RKQVGPDEWRV W+QFAPSRRQHFPEMDSVAR+YVAEFSRRRSAWHTSRKGRKEAMVYGSALFVAVL IDNLLKMV
Sbjct:  114 DTRLGAKQEKIRVHEIGVIERFAAVVSALDGSLEPREGDEFLAWLRSQGFDDASPTPQPGGGPXXXXXETAAGTKVENKCSNGKSEGGAAEERAEVEAFLSAASARLNALVVDKEDALFGDRGEAEAEESLQAKGERGGXXXXXXXGGDASGEPVVSPNMSDEDLYQARLGAHRAMLCHFLSLLSSSLGKQQLKTGLSLGEVVAATRSAYLAAPEDRLAAVYPLFDTHGDGHLDTESVDLAVDAVVLSVTAASERCYAAAARPALDKKTAAVMPATMKYVLWDVMEVPMKRRCSFAWAENRKQVGPDEWRVSWDQFAPSRRQHFPEMDSVARDYVAEFSRRRSAWHTSRKGRKEAMVYGSALFVAVLIIDNLLKMV 489
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BLAST of mRNA_Ecto-sp13_S_contig10642.594.1 vs. uniprot
Match: A0A836CPD1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPD1_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 3.320e-17
Identity = 41/99 (41.41%), Postives = 59/99 (59.60%), Query Frame = 1 
Query:  817 MPATMKYVLWDVMEIPMKRRCSFAWAEDRKQVGPDEWRVGWEQFAPSRRQHFPEMDSVARNYVAEFSRRRSAWHTSRKGRKEAMVYGSALFVAVLFIDN 1113
            MP+ ++Y  WD ++ P KRRC+FA+AE RKQVGP EW V  + F  ++R +F ++  V    +      R  WH  RK RK A +YG+ LF A + +D 
Sbjct:    1 MPSALRYATWDRLDFPSKRRCAFAFAEGRKQVGPVEWHVTADAFLETQRTYFVDLVRVGGALMDVMEDERWQWHMLRKRRKRAAIYGALLFSATVVLDT 99
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10642.594.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KUE0_9PHAE1.330e-22892.55Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CPD1_9STRA3.320e-1741.41Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10642contigEcto-sp13_S_contig10642:1439..5646 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1659
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-10_002220.1
Cds size654
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10642.594.1prot_Ecto-sp13_S_contig10642.594.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10642 1967..4643 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462544.1004758-UTR-Ecto-sp13_S_contig10642:1438..19661681462544.1004758-UTR-Ecto-sp13_S_contig10642:1438..1966Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10642 1439..1966 -
1681462544.1799345-UTR-Ecto-sp13_S_contig10642:4643..50861681462544.1799345-UTR-Ecto-sp13_S_contig10642:4643..5086Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10642 4644..5086 -
1681462544.1873183-UTR-Ecto-sp13_S_contig10642:5612..56461681462544.1873183-UTR-Ecto-sp13_S_contig10642:5612..5646Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10642 5613..5646 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462544.1145928-CDS-Ecto-sp13_S_contig10642:1966..20991681462544.1145928-CDS-Ecto-sp13_S_contig10642:1966..2099Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10642 1967..2099 -
1681462544.1270044-CDS-Ecto-sp13_S_contig10642:2908..29971681462544.1270044-CDS-Ecto-sp13_S_contig10642:2908..2997Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10642 2909..2997 -
1681462544.1378605-CDS-Ecto-sp13_S_contig10642:3449..37031681462544.1378605-CDS-Ecto-sp13_S_contig10642:3449..3703Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10642 3450..3703 -
1681462544.1532063-CDS-Ecto-sp13_S_contig10642:4195..43491681462544.1532063-CDS-Ecto-sp13_S_contig10642:4195..4349Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10642 4196..4349 -
1681462544.170745-CDS-Ecto-sp13_S_contig10642:4619..46431681462544.170745-CDS-Ecto-sp13_S_contig10642:4619..4643Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10642 4620..4643 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10642.594.1

>prot_Ecto-sp13_S_contig10642.594.1 ID=prot_Ecto-sp13_S_contig10642.594.1|Name=mRNA_Ecto-sp13_S_contig10642.594.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=218bp
MSDEDLYQAKLGAHRAMLCHFLSLLSSSLGKQQLKTGLSLGEVVAATRSA
YLAVPEDRLAAVYPLFDTHGDGHLDAESADLAVDAVVLSVTAASERCYAA
AARPALDKKTAAVMPATMKYVLWDVMEIPMKRRCSFAWAEDRKQVGPDEW
RVGWEQFAPSRRQHFPEMDSVARNYVAEFSRRRSAWHTSRKGRKEAMVYG
SALFVAVLFIDNLLKMV*
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mRNA from alignment at Ecto-sp13_S_contig10642:1439..5646-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10642.594.1 ID=mRNA_Ecto-sp13_S_contig10642.594.1|Name=mRNA_Ecto-sp13_S_contig10642.594.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4208bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10642:1439..5646- (Ectocarpus species13 EcNAP12_S_4_19m)
GACACACGGCTAGGGGCGAAACAGGAGAAGATCCGTGAGTCTTTGTTGGC
GCGGGGAGGGGGGAAGGGGGGGTGAGACGTGGGGGAAAGAACAACAGTCC
AGTTATTTATTTCAACATTTTTTGTGTTTGATTCCGGGACCGATGGTTTT
GTTCCTGCTGGCTGCTTGCTGCAGTGAAGCGGTGCGAGTGAAGTATGTTC
ACGACGCCTGCACTCTCTGTACTGTAGATAAAAGTACAAACTTGTGTTTC
GGTTGTGTTGTCGTGATGCCTATGGGGGGCATGCCACTTGCGACAAAAAA
AATGCACACGCGGTACTGTCACGTTAACCGGTTGCCGAGGAGGCCTTGAT
GAGCGTCATCGTCGTGAACCATCTTCATGATAAATCTCGGCAGAAGCTAT
TTACTCGCAGCAGATTGCATGGGGAAGCTTCGAACGCGTGTGCGTGGAGC
TCTCACCTCCGTTTCGCTACACCCGCACCGCCGTTTCTCACCACCACCTC
CACCTGCTGTTTTTCCGGTTGGCATGCATTCTCCCACGGGAACGAAACGC
TGCATCAAAGGGGTGCACGAGATCGGCGTGATCGAGCGTTTCGCGACCGT
CGTCTCCGCCCTGGACGGCAGCCTCGAGCCCCGGGAAGGCGACGAGTTCT
TGGCGTGGCTGCGCTCGCAGGGCTTCGACGACGCCCCCCCCACGCCACAG
CCAGGGGGTGGTCCTCCGACAGAGGAAGAGGGAACAGCAACGGGAACAAA
GGTCGAGAATAAAGGTAACAACAGGAAGAGGGAAGGCGGAGCGGCGGAGG
AGCGGGCGGAAGTGGAGGCGTTTCTGTCGGCGGCGTCCGCAAGGCTCAAC
GCGCTCGTCGCGGACAAGGAAGACGCGCTCTTCGGGGATAGGGGCGAAGC
AGAAGCAGAAGAATCCTTGCAGGCGAAGGGGGAACGGGGAGGGGAAGGCG
GGGCAGTAGCCGCCGGGAGCGATGCTAGCGGGGAGCCGGTGGTCTCGCCC
AACATGTCAGACGAGGACCTGTACCAGGTGGGGGAGCGCTCGCGAAGGGC
GGTGGGGGCATCTCGGCTGTGGTCCAATCGATGGTAATTTTGGTTCCCTG
CTTGTTTGTGAATCCTTGTGTTCAAGTGTGTTGAAGATGTCGAAGCATGG
ATAGTGGTGTGAAAACCTGTCGTCATGTTCGTTGGATCCGTTTCCGTGGA
TGTGAGCAGACACGCAGGCGACTTTTTCGTTTAGAAGTACGTTTTTTCCG
CCGCATGGTTCCGCTTTTTTTAATCGTTGTATTTTTGTTGGTTGCAGGCC
AAGCTCGGCGCACACAGAGCTATGCTTTGCCACTTCCTATCACTCCTGTC
GTCGAGCTTGGGTAAGCAGCAGCTCAAGACTGGGCTGTCGTTGGGGGAGG
TGGTGGCGGCGACGAGATCGGCCTACCTGGCCGTCCCGGAGGATAGGTTA
GGTGAGGCAAGGCAACCGATACAGCCAGAGAGGGACTCGCCGACGGTATT
TTTGGCCCCGCCTACCTTGTCCATCCTATCTGTTCTTCTACAGTACCCCT
GTTCGTTTTTGAGAGACTCGCCGTCTGAGGATGGTTGTTGGGTCATAAGC
CGCAGATTCAAGCGTGCGTCAAATCAATCGGAACCCTGGACAAAATTGCA
GGATCAAGCGTACGTCCAACGAAATCAGCACGTCCAGACCCTTCATTTCC
GCCATTTATGGCTTCCGATAACCTCCCCAAACCCATTGTCCATTTATCTA
CCCTCCGCAACTTTTTTTGTACTTTTCCTTGTTTTCCGTCCCCTCCCTCA
CACATATTGCAATCAAAGCCCGGCCTAAACCATTGTTTTTTGGCGTGTTC
TACCGGCCGCAACTTTTTTTTTTGACATTTCTTCACTTCCTTCCCCTCCC
TCACACATGCTGTTGCTATATCAAACCCCGGCATCACCCACAGCTGCGGT
GTATCCGCTCTTCGACACGCATGGGGACGGGCACCTCGACGCCGAGAGCG
CAGATCTCGCCGTGGACGCGGTGGTGCTCTCCGTAACGGCGGCGTCCGAG
CGCTGCTACGCGGCGGCCGCGCGGCCCGCGCTGGATAAGAAGACGGCGGC
GGTGATGCCCGCCACGATGAAGTACGTGCTGTGGGACGTGATGGAAATAC
CGATGAAGAGGCGGTGCTCCTTCGCGTGGGCGGAGGACCGCAAGCAGGTA
GACACGTGTGCCATCCCGGCAGTAGCAGCTGTTCCGGACTTGTGGTACAT
TTTACTCCAACATACGGAGCCGAAAGCCAACAACCGTAAACAGGAGTGGG
CAAGCACGGTGCTGGCACGGCAGTAGTGATGTTGCCGGGCATGGAGGTCT
GTGTTGTGCAACATTCAGTGGTGGCTGTTGTGATTGCCGGGAGCGCGGGG
CTCTCCTTTTTTTTTGTTATTGAAAACTGGAGCGGCGTGCAGTCTCTTTT
CTACTATCGCACATGTGGCACGGGTCAGGAGTTGCTGCACTTATGGACGT
AAAACAAATTTTGCTTAATCCCATGGGAAGATTGTATTACCTGAGACCGA
CTCCCTTTCATGTTGCATGCAACGCACGCGCCTTTTGGTCGCATCACCCT
TGTCTTGACCCCCTTCCCCCCCGGTGGGCGCACACGGTCATGCGTGCAGG
TCGGACCGGACGAGTGGCGGGTTGGCTGGGAGCAGTTTGCGCCTTCGCGA
CGACAACACTTCCCGGAGATGGACTCCGTAGCTAGAAAGTGAGAACCCTT
TTGGGTGCCTAACCCTAACAACCCTAAGACCCTAAGCCTACCCCAACCTC
ACCTATGAGGGGGCGAGGCGGGAGGGGAGGGGGGGGGGTACTCATATTTT
GGGGGCGATGGGGGGGAGGGACATGTCGGCTTTGGCTCGTTTGAATTTTT
CCGTGGCGTGGTTGATGCCCAGTTCTGGTACCATGCCACGTTGGGATACA
TGCAAGGGGGCCTACTACACTGCCCTGTTTTTGAGGCGCGTCTGCTCTCT
CCGCGGTAGGCTCGCGTCGGCTATGACACTCGGCGTTGCTGATGCCCGGT
GCGCGAGCGTTGCTGATGCCCGGTGCGCGAGTTTGTGGTGGGGTGCATTC
GTAGCCTTTTGCCCAGCCCTCCCCATTCGTGATCTTCTTGTGATAGGACG
GTGAATATTGCTTCTACGTGCGGATAGCGTAGACATGAAAGCATTGCGCG
GTTAGATGAAGTCGTACGGTCATGTCTGCTTGTGTTTTTTTGTGTAGTTG
TTGTGTGGTGTGTGCTTCATGTGCTCGTGAGAGGGTCCGTGTTGGCTAAG
CGAGCAGTCTGGTGCCGTTACTGACCATGGGGCATTAGGTTGCGACTTGT
GTGATAAGAGCGACCGCCTCAATTTACCCACCATGCCGCTCTGTCTCGAA
CTTAACGTCCGTTGAGTTGGCAACAGCAATGCTAGAATAGAAGCGCCGAT
TCGAGAACGATTTTGAAGGTGACTCTAACAGAAGCAACATTTCACCTCCC
CCCCCCCGCTTTTGTTCCAACTCTCATGTGATATCTCCCGCGATCAGCTA
TGTTGCGGAGTTCAGCAGGCGGCGTTCGGCATGGCACACCTCCCGCAAGG
GGCGTAAGGAGGCCATGGTGTACGGGTCGGCCTTGTTCGTTGCAGTGCTG
TTCATCGACAACCTGCTGAAGATGGTGTAGCCACAACATGGCTAGCGCGG
GCTTTGGCGCTTGAGGGCGATTCAATCGGCCTGGTGATTGGCTAGCCAAA
AGTACCTCTGGGCGAACATCCCTTGGAATACCCAGCAGTAGTAGCATAAG
GCGTGCATGCTGCTGTCCACCGAGAAGCCGTCGAAGGCCCTGCCGAAGGC
GGTGTCGCCAGCTTAGTGCGAAGGGAACATGGTACAGTCATGGCTCTGAT
ATATGAGGGCACCTTGTAGTAGGGGGCTCCGATAGAAAGAGAGGGTCGAA
TCGGTTTGTCACGGACTCGACCCGCTATAGTTGCTTACCCTCGTATTCGG
GTGCAGGAGGGGGACTCCGACATAAGAGGGTCGAGGACCTTTGTCACACC
GCCCTCGTATGTTGGAGCCCGTATGTTGGAGCCCGTATGTTGGAGCCACG
ACCGTAAGCATTCTGGCAGGATGACAGGCAGGTTGGCATTCGGGGGTGAT
GGCGAGAGCGGACCGACGCCCACATAAGGACGAGACTTAGGGGGAAGGGT
GGTTGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10642:1439..5646-

>mRNA_Ecto-sp13_S_contig10642.594.1 ID=mRNA_Ecto-sp13_S_contig10642.594.1|Name=mRNA_Ecto-sp13_S_contig10642.594.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=654bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10642:1439..5646- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCAGACGAGGACCTGTACCAGGCCAAGCTCGGCGCACACAGAGCTAT
GCTTTGCCACTTCCTATCACTCCTGTCGTCGAGCTTGGGTAAGCAGCAGC
TCAAGACTGGGCTGTCGTTGGGGGAGGTGGTGGCGGCGACGAGATCGGCC
TACCTGGCCGTCCCGGAGGATAGGTTAGCTGCGGTGTATCCGCTCTTCGA
CACGCATGGGGACGGGCACCTCGACGCCGAGAGCGCAGATCTCGCCGTGG
ACGCGGTGGTGCTCTCCGTAACGGCGGCGTCCGAGCGCTGCTACGCGGCG
GCCGCGCGGCCCGCGCTGGATAAGAAGACGGCGGCGGTGATGCCCGCCAC
GATGAAGTACGTGCTGTGGGACGTGATGGAAATACCGATGAAGAGGCGGT
GCTCCTTCGCGTGGGCGGAGGACCGCAAGCAGGTCGGACCGGACGAGTGG
CGGGTTGGCTGGGAGCAGTTTGCGCCTTCGCGACGACAACACTTCCCGGA
GATGGACTCCGTAGCTAGAAACTATGTTGCGGAGTTCAGCAGGCGGCGTT
CGGCATGGCACACCTCCCGCAAGGGGCGTAAGGAGGCCATGGTGTACGGG
TCGGCCTTGTTCGTTGCAGTGCTGTTCATCGACAACCTGCTGAAGATGGT
GTAG
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