mRNA_Ecto-sp13_S_contig18828.5935.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18828.5935.1
Unique NamemRNA_Ecto-sp13_S_contig18828.5935.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18828.5935.1 vs. uniprot
Match: D7FJV6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJV6_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 3.800e-50
Identity = 85/101 (84.16%), Postives = 89/101 (88.12%), Query Frame = 1 
Query:  112 FPRHRNLRGMVGRVTKAHMASTRQDLSERQLLGEDRLNEDFVAQVVTPALLHAANDITAHPVIEIGKDESIVCKCTRKAREWGRLSNGGYSTTNATAYSKR 414
            FPRHRNLR MV RVTKAHMASTRQDLSERQLL EDRL+EDFVAQVVT ALLH AN+I AHPV E+GK ESIVCKCTRKAR  GRL NGG+STTNA AYSKR
Sbjct:   40 FPRHRNLRDMVLRVTKAHMASTRQDLSERQLLEEDRLHEDFVAQVVTSALLHTANNIAAHPVNEVGKHESIVCKCTRKARACGRLCNGGFSTTNARAYSKR 140
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BLAST of mRNA_Ecto-sp13_S_contig18828.5935.1 vs. uniprot
Match: A0A6H5L779_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L779_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 2.080e-25
Identity = 50/58 (86.21%), Postives = 52/58 (89.66%), Query Frame = 3 
Query:  240 AGRHAGSTARRERHHRPPGHRDWQRREHRVQVHEKGEGVGQAFQRWIQHHQRHRIFQE 413
            AGRHAGSTARRERH RPPG RDWQ REHRVQVHE+GEG GQAFQRW+QHHQR  IFQE
Sbjct:   20 AGRHAGSTARRERHSRPPGQRDWQTREHRVQVHEEGEGAGQAFQRWMQHHQRQGIFQE 77
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BLAST of mRNA_Ecto-sp13_S_contig18828.5935.1 vs. uniprot
Match: A0A6H5KF40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF40_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 5.660e-25
Identity = 57/101 (56.44%), Postives = 71/101 (70.30%), Query Frame = 1 
Query:  115 PRHRNLRGMVGRV----TKAHMASTRQDLSERQLLGEDRLNEDFVAQVVTPALLHAANDITAHPVIEIGKDESIVCKCTRKAREWGRLSNGGYSTTNATAY 405
            P    L G++ RV    TKA+ ASTR+ L+   LLG +RL EDF+ QVVTPALLHAANDI A PV EIG  E+IVCK TRK+R W +LS GG+ + +A A+
Sbjct:   70 PESEELTGLMSRVMWRFTKAYQASTRKTLTLGYLLGPERLKEDFLGQVVTPALLHAANDIAALPVNEIGTHETIVCKVTRKSRAWIKLSAGGFGSADARAF 170
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BLAST of mRNA_Ecto-sp13_S_contig18828.5935.1 vs. uniprot
Match: A0A6H5K5R4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5R4_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 1.950e-24
Identity = 57/101 (56.44%), Postives = 71/101 (70.30%), Query Frame = 1 
Query:  115 PRHRNLRGMVGRV----TKAHMASTRQDLSERQLLGEDRLNEDFVAQVVTPALLHAANDITAHPVIEIGKDESIVCKCTRKAREWGRLSNGGYSTTNATAY 405
            P    L G++ R+    TKAH ASTR+ L+   LLG +RL +DF+ QVVTPALLHAANDI A PV EIG  E+IVCK TRK+R W +LS GG+ + NA A+
Sbjct:  327 PESEELTGLMSRIMWRFTKAHQASTRKALTLGFLLGPERLKDDFLGQVVTPALLHAANDIAALPVNEIGTHETIVCKVTRKSRAWIKLSAGGFGSANARAF 427
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BLAST of mRNA_Ecto-sp13_S_contig18828.5935.1 vs. uniprot
Match: D7FUZ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUZ7_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 1.010e-23
Identity = 57/101 (56.44%), Postives = 70/101 (69.31%), Query Frame = 1 
Query:  115 PRHRNLRGMVGRV----TKAHMASTRQDLSERQLLGEDRLNEDFVAQVVTPALLHAANDITAHPVIEIGKDESIVCKCTRKAREWGRLSNGGYSTTNATAY 405
            P    L G++ R+    TKAH ASTR+ L+   LLG +RL EDF+ QVVTPALL AANDI A PV EIG  E+IVCK TRK+R W +LS GG+ + NA A+
Sbjct:  360 PESTELTGLMSRIMWRFTKAHQASTRKALTLGYLLGPERLKEDFLGQVVTPALLQAANDIAALPVNEIGTHETIVCKVTRKSRAWIKLSAGGFGSANAWAF 460
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BLAST of mRNA_Ecto-sp13_S_contig18828.5935.1 vs. uniprot
Match: A0A6H5K4A1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4A1_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 2.950e-23
Identity = 53/92 (57.61%), Postives = 62/92 (67.39%), Query Frame = 1 
Query:  130 LRGMVGRVTKAHMASTRQDLSERQLLGEDRLNEDFVAQVVTPALLHAANDITAHPVIEIGKDESIVCKCTRKAREWGRLSNGGYSTTNATAY 405
            L  ++ R TKAHM STR+DLSE QL+GEDRL+EDF+AQ                    IG  ES+VCKCTRKAR WGRLSNGGYS+TNA A+
Sbjct:   39 LHRVMWRYTKAHMQSTREDLSEGQLVGEDRLHEDFLAQ--------------------IGTLESVVCKCTRKARAWGRLSNGGYSSTNAKAF 110
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BLAST of mRNA_Ecto-sp13_S_contig18828.5935.1 vs. uniprot
Match: A0A6H5KR20_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR20_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 3.220e-23
Identity = 56/101 (55.45%), Postives = 69/101 (68.32%), Query Frame = 1 
Query:  115 PRHRNLRGMVGRV----TKAHMASTRQDLSERQLLGEDRLNEDFVAQVVTPALLHAANDITAHPVIEIGKDESIVCKCTRKAREWGRLSNGGYSTTNATAY 405
            P    L G++ R+    TKAH ASTR+ L+   LLG +RL EDF+ QVVTPALLHAANDI A PV EIG  E+IVCK  RK++ W +LS GG  + NA A+
Sbjct:  177 PESEELTGLMFRIMWRFTKAHQASTRKVLTLGYLLGPERLKEDFLGQVVTPALLHAANDIAALPVNEIGTHETIVCKVIRKSKAWIKLSAGGIGSANARAF 277
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BLAST of mRNA_Ecto-sp13_S_contig18828.5935.1 vs. uniprot
Match: A0A6H5K1Q8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1Q8_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 1.280e-22
Identity = 53/92 (57.61%), Postives = 62/92 (67.39%), Query Frame = 1 
Query:  130 LRGMVGRVTKAHMASTRQDLSERQLLGEDRLNEDFVAQVVTPALLHAANDITAHPVIEIGKDESIVCKCTRKAREWGRLSNGGYSTTNATAY 405
            L  ++ R TKAHM STR+DLSE QL+GEDRL+EDF+AQ                    IG  ES+VCKCTRKAR WGRLSNGGYS+TNA A+
Sbjct:    9 LHRVMWRYTKAHMQSTREDLSEGQLVGEDRLHEDFLAQ--------------------IGTLESVVCKCTRKARAWGRLSNGGYSSTNAKAF 80
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BLAST of mRNA_Ecto-sp13_S_contig18828.5935.1 vs. uniprot
Match: A0A6H5KBL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBL7_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 1.950e-22
Identity = 52/92 (56.52%), Postives = 61/92 (66.30%), Query Frame = 1 
Query:  130 LRGMVGRVTKAHMASTRQDLSERQLLGEDRLNEDFVAQVVTPALLHAANDITAHPVIEIGKDESIVCKCTRKAREWGRLSNGGYSTTNATAY 405
            L  ++ R TKAHM STR+DLSE QL+GE RL+EDF+AQ                    IG  ES+VCKCTRKAR WGRLSNGGYS+TNA A+
Sbjct:   87 LHRVMWRYTKAHMQSTREDLSEGQLVGEARLHEDFLAQ--------------------IGSLESVVCKCTRKARAWGRLSNGGYSSTNAKAF 158
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18828.5935.1 vs. uniprot
Match: A0A6H5KEJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEJ3_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 1.030e-21
Identity = 53/92 (57.61%), Postives = 62/92 (67.39%), Query Frame = 1 
Query:  130 LRGMVGRVTKAHMASTRQDLSERQLLGEDRLNEDFVAQVVTPALLHAANDITAHPVIEIGKDESIVCKCTRKAREWGRLSNGGYSTTNATAY 405
            L  ++ R TKAHM STR+DLSE QL+GEDRL+EDF+AQ                    IG  ES+VCKCTRKAR WGRLSNGGYS+TNA A+
Sbjct:  244 LHRVMWRYTKAHMQSTREDLSEGQLVGEDRLHEDFLAQ--------------------IGTLESVVCKCTRKARAWGRLSNGGYSSTNAKAF 315
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18828.5935.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D7FJV6_ECTSI3.800e-5084.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L779_9PHAE2.080e-2586.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF40_9PHAE5.660e-2556.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5R4_9PHAE1.950e-2456.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUZ7_ECTSI1.010e-2356.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K4A1_9PHAE2.950e-2357.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KR20_9PHAE3.220e-2355.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1Q8_9PHAE1.280e-2257.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBL7_9PHAE1.950e-2256.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEJ3_9PHAE1.030e-2157.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18828contigEcto-sp13_S_contig18828:416..2406 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size414
Hectar predicted targeting categoryother localisation
Exons3
Cds size276
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462962.6089816-CDS-Ecto-sp13_S_contig18828:415..5861681462962.6089816-CDS-Ecto-sp13_S_contig18828:415..586Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18828 416..586 -
1681462962.619135-CDS-Ecto-sp13_S_contig18828:1358..14631681462962.619135-CDS-Ecto-sp13_S_contig18828:1358..1463Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18828 1359..1463 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462962.629067-UTR-Ecto-sp13_S_contig18828:1463..14671681462962.629067-UTR-Ecto-sp13_S_contig18828:1463..1467Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18828 1464..1467 -
1681462962.63893-UTR-Ecto-sp13_S_contig18828:2272..24061681462962.63893-UTR-Ecto-sp13_S_contig18828:2272..2406Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18828 2273..2406 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18828.5935.1prot_Ecto-sp13_S_contig18828.5935.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18828 416..1463 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18828.5935.1

>prot_Ecto-sp13_S_contig18828.5935.1 ID=prot_Ecto-sp13_S_contig18828.5935.1|Name=mRNA_Ecto-sp13_S_contig18828.5935.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=92bp
MVGRVTKAHMASTRQDLSERQLLGEDRLNEDFVAQVVTPALLHAANDITA
HPVIEIGKDESIVCKCTRKAREWGRLSNGGYSTTNATAYSKR
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mRNA from alignment at Ecto-sp13_S_contig18828:416..2406-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18828.5935.1 ID=mRNA_Ecto-sp13_S_contig18828.5935.1|Name=mRNA_Ecto-sp13_S_contig18828.5935.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1991bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18828:416..2406- (Ectocarpus species13 EcNAP12_S_4_19m)
TCCACCCCAACCAGCAAAACTGCTGTGACCCAGCCGGCCGCTAGAGGGTA
AAGTGGACCTCAACAGGACAGTAGGTCAAGGCACACACTCGGGAGAAATC
GGGCGCAACCTTTTCCTCGGCATCGCAATCTCAGGTGAAAGCTGCCTCGC
ATAGACATTCACCGGCGCACTCACACCCGGACGCACGGAACACAGCAGCA
GCTACATTAGACGTACAAAATTGTCCAACGGCAACAAGAGACCTGCATGG
CAGCAGAACACCTGTCAGTCTCCGTTGGTGCGTGTAGCATACGTCACGCT
CGCATGCTTGCACGCTTGCGCACATAGGCGTCTCTCAAATCGCTTCGTGG
ACGCGTGCTTTTCTTGGCGCGTTTGCGGAAAGCTTGTACGAAGAGAAATG
ATAGTTTCTGTAGGTCGCGTAAGATACCACACCAGTGGTATCTTATGCCG
TACAATATGAACCCCAAGTCTCTGTACTACGTTCGACCCGTTTGTGCATT
CGTACCATGTGTTCCCTACCTGTATTTGTCTAGTTCAACCTACATGTATG
GCACCACGACCGTTATGACCGTGATTATTGCTGTTTGTATAGCATGACTG
CTGATGATTCGGCGTTGTTTTTTACACCCCTCTAGTATCCTACTTGCTGT
AGGCATATGCATACCTCGTCTTACATGTAGATCAGATTTCTCCCATGGAT
TGTACCCGCTGTTACCTTGTGTAACTTAGATGGGAGAAGAAAGTGGGTGG
TGCCGCTCGGTGATATTGCCTGTTCGTACTCTGTTCAACTTCATATGTGT
GTTGTATCAAGAACGGTGCGGATGATGAGATATTTGTGTCCTGTAGGGAG
TGCAGATGTGGTCTTCCCTATCCAACGTTTCTATTGTTCTCGGTCTGGTG
CGTGCCTGTTGTGTTTGTTGTCTTTTTTTAGCGTGCTAGGGGCATGGTCG
GGCGAGTCACCAAGGCGCACATGGCGTCGACACGCCAGGACCTGTCCGAG
AGGCAACTGCTAGGAGAGGATCGGTTAAACGAGGACTTCGTGGCGCAGGT
GATAATTTGTTTCCATCTGATATGCCCTCAACGACTGGTGTCCCGTACCT
TTTTTTCATTTCATACCTTTATACACGATCGCAGTTCAAACCCATCGCTT
GTTTCGCGTCCCCACAAGACAAGGACATGTTTTAGCACACGTGAGGAAAT
ACAGAGATTCGCCCTCCCCTGTAAGAGAACACTCCAGAGCGCAGCAGAAA
ATAGTCAAGGGAGAACTCGATATAAATTCCACTTTGGTGGGCGGTACCGG
TATACGTTTTACCGCCATTTGTCGGTTGTACCGCCACCGTCAAAGTCGAT
ACCGCCGAGTGCAGAAACCGCCAGCTGCCAAAACGATACCGCCGTATGGC
GTTACCGCCAAAAAAAAATCGCCGTTTTTTGTCTTACCGCCACCGCCAAA
GTCGGTACCACCGAAGAACACGTTAACGCCGACCGCTAAAACATGTAGCG
CCATACGGCAATACCGCCGAAAATTCACCGCCATTTTTTTTCGTACCGCC
ACTGCCAAAGTCGATACCGTCGAATAGCATTACCGCCGAAAACGTGTCCG
CCTATAAAACACGTACCGAGTAAACCCTTGAAAATATTGACACGATAAGA
GTATACGAACGCCGGAGCATGTAACATTTCGAATGCATGGCAGGTACATC
GTACCGGTAGGAAGCAGCAGCACGGTACACGCGCTGCAACGCTACACATG
TCTCCACAGGCACACATTCAGCAGCACCTTTCTTTCCCACGCTGCCTGCT
GAAGTCATGTTGTACACCAGGTCGTCACGCCGGCTCTACTGCACGCCGCG
AACGACATCACCGCCCACCCGGTCATCGAGATTGGCAAAGACGAGAGCAT
CGTGTGCAAGTGCACGAGAAAGGCGAGGGAGTGGGGCAGGCTTTCCAACG
GTGGATACAGCACCACCAACGCCACCGCATATTCCAAGAGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18828:416..2406-

>mRNA_Ecto-sp13_S_contig18828.5935.1 ID=mRNA_Ecto-sp13_S_contig18828.5935.1|Name=mRNA_Ecto-sp13_S_contig18828.5935.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=276bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18828:416..2406- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCGGGCGAGTCACCAAGGCGCACATGGCGTCGACACGCCAGGACCT
GTCCGAGAGGCAACTGCTAGGAGAGGATCGGTTAAACGAGGACTTCGTGG
CGCAGGTCGTCACGCCGGCTCTACTGCACGCCGCGAACGACATCACCGCC
CACCCGGTCATCGAGATTGGCAAAGACGAGAGCATCGTGTGCAAGTGCAC
GAGAAAGGCGAGGGAGTGGGGCAGGCTTTCCAACGGTGGATACAGCACCA
CCAACGCCACCGCATATTCCAAGAGA
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