mRNA_Ecto-sp13_S_contig18813.5931.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18813.5931.1
Unique NamemRNA_Ecto-sp13_S_contig18813.5931.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18813.5931.1 vs. uniprot
Match: D8LQI0_ECTSI (JmjC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQI0_ECTSI)

HSP 1 Score: 167 bits (423), Expect = 1.240e-48
Identity = 80/84 (95.24%), Postives = 81/84 (96.43%), Query Frame = 1 
Query:    1 DSSLGAYRLAPNAFGSHNVSAGWQSNVDLYQYGAATASWPTAEEGQEVMQHAVCGVQEAGELVLIPPRHWHQVYHLEPSLAVAS 252
            DSSLG YRLAPNAFGSHNVSAGWQSNVDLYQ+GAATASWPTA EGQEVMQHAV GVQEAGELVLIPPRHWHQVYHLEPSLAVAS
Sbjct:  258 DSSLGTYRLAPNAFGSHNVSAGWQSNVDLYQHGAATASWPTAGEGQEVMQHAVSGVQEAGELVLIPPRHWHQVYHLEPSLAVAS 341
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BLAST of mRNA_Ecto-sp13_S_contig18813.5931.1 vs. uniprot
Match: A0A835YWS3_9STRA (JmjC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWS3_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 7.050e-15
Identity = 47/94 (50.00%), Postives = 54/94 (57.45%), Query Frame = 1 
Query:   10 LGAYRLAPNAFG-SHNVSAGWQSNVDLYQYGAATASWPTAEEGQEVMQHAVCGV------------QEAGELVLIPPRHWHQVYHLEPSLAVAS 252
            L  YRL PNA+G S+NVSAGWQS VDLY+    + S     +G  +   A  GV            Q  GE VLIPPR WHQV HL PS+AVAS
Sbjct:   18 LDGYRLPPNAWGGSYNVSAGWQSPVDLYR--PFSESGAHGSDGIMLSAAAAYGVPEDVWARRKQVVQREGETVLIPPRWWHQVIHLAPSIAVAS 109
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BLAST of mRNA_Ecto-sp13_S_contig18813.5931.1 vs. uniprot
Match: A0A830HZM1_9CHLO (JmjC domain-containing protein n=2 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HZM1_9CHLO)

HSP 1 Score: 53.1 bits (126), Expect = 3.120e-6
Identity = 32/87 (36.78%), Postives = 45/87 (51.72%), Query Frame = 1 
Query:   22 RLAPNAFGSHNVS--AGWQSNVDLYQYGAATASWPTAEEGQE---------VMQHAVCGVQEAGELVLIPPRHWHQVYHLEPSLAVA 249
            R+ P A+   N S  AGWQ+ VD Y   +A  +  TA  G +         +  H +   Q  GELV+IPP  +HQVYH   ++A+A
Sbjct:  191 RVPPAAWAGDNTSIGAGWQTAVDAYAERSADGTSFTARGGTQEHARAVEEAIQNHGITVHQSEGELVIIPPECFHQVYHHTATVAIA 277
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BLAST of mRNA_Ecto-sp13_S_contig18813.5931.1 vs. uniprot
Match: A0A7S1C1J9_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1C1J9_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 1.150e-5
Identity = 20/38 (52.63%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:  139 EVMQHAVCGVQEAGELVLIPPRHWHQVYHLEPSLAVAS 252
            ++ Q+  CGVQ AG+L+++P   WHQ Y LEPS++VAS
Sbjct:  336 DITQNMYCGVQHAGDLMIVPAHWWHQTYGLEPSISVAS 373
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BLAST of mRNA_Ecto-sp13_S_contig18813.5931.1 vs. uniprot
Match: A0A7S2CFT5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CFT5_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 2.950e-5
Identity = 21/28 (75.00%), Postives = 24/28 (85.71%), Query Frame = 1 
Query:  166 VQEAGELVLIPPRHWHQVYHLEPSLAVA 249
            VQ AGEL+LIPPR WHQ Y+LEP +AVA
Sbjct:   50 VQRAGELLLIPPRWWHQTYYLEPCVAVA 77
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BLAST of mRNA_Ecto-sp13_S_contig18813.5931.1 vs. uniprot
Match: F0YQV8_AURAN (Expressed protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YQV8_AURAN)

HSP 1 Score: 49.7 bits (117), Expect = 5.080e-5
Identity = 28/71 (39.44%), Postives = 35/71 (49.30%), Query Frame = 1 
Query:   55 VSAGWQSNVDLYQYGAATASWPTA-----EEGQEVMQHAVCGVQEAGELVLIPPRHWHQVYHLEPSLAVAS 252
            V  GW          A  A+W  A     +         V  +Q AG++V++PPR WHQ Y LEPSLAVAS
Sbjct:  225 VGDGWPEPYAYDDDPALAATWSAAARFAPDVALPKTARFVTALQRAGDVVVVPPRAWHQTYALEPSLAVAS 295
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18813.5931.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LQI0_ECTSI1.240e-4895.24JmjC domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A835YWS3_9STRA7.050e-1550.00JmjC domain-containing protein n=1 Tax=Tribonema m... [more]
A0A830HZM1_9CHLO3.120e-636.78JmjC domain-containing protein n=2 Tax=Pycnococcus... [more]
A0A7S1C1J9_9STRA1.150e-552.63Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A7S2CFT5_9STRA2.950e-575.00Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
F0YQV8_AURAN5.080e-539.44Expressed protein (Fragment) n=1 Tax=Aureococcus a... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18813contigEcto-sp13_S_contig18813:2447..3418 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score169.9
Seed ortholog evalue5.2e-40
Seed eggNOG ortholog2880.D8LQI0
Model size252
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs2CZ69@1,2S8PH@2759
Cds size252
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462962.379834-CDS-Ecto-sp13_S_contig18813:2446..24821681462962.379834-CDS-Ecto-sp13_S_contig18813:2446..2482Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18813 2447..2482 -
1681462962.3900852-CDS-Ecto-sp13_S_contig18813:3202..34181681462962.3900852-CDS-Ecto-sp13_S_contig18813:3202..3418Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18813 3203..3418 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18813.5931.1prot_Ecto-sp13_S_contig18813.5931.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18813 2447..3418 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18813.5931.1

>prot_Ecto-sp13_S_contig18813.5931.1 ID=prot_Ecto-sp13_S_contig18813.5931.1|Name=mRNA_Ecto-sp13_S_contig18813.5931.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=84bp
DSSLGAYRLAPNAFGSHNVSAGWQSNVDLYQYGAATASWPTAEEGQEVMQ
HAVCGVQEAGELVLIPPRHWHQVYHLEPSLAVAS
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mRNA from alignment at Ecto-sp13_S_contig18813:2447..3418-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18813.5931.1 ID=mRNA_Ecto-sp13_S_contig18813.5931.1|Name=mRNA_Ecto-sp13_S_contig18813.5931.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=972bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18813:2447..3418- (Ectocarpus species13 EcNAP12_S_4_19m)
GATTCCTCTCTTGGAGCCTACCGCTTGGCCCCGAACGCCTTCGGCTCCCA
CAACGTCTCGGCGGGATGGCAGAGCAACGTGGACCTCTACCAGTACGGAG
CAGCCACGGCGTCTTGGCCGACAGCGGAAGAGGGGCAAGAGGTCATGCAG
CACGCTGTCTGTGGAGTACAGGAGGCGGGGGAACTTGTTCTTATACCGCC
GCGTCATTGGCACCAGGTATGCGTGCGCAAGCGAAGACCTCGTTTGTGGG
TGTGGTTTGTATGCATGTGTGATACATACGCGTGCTATATCCAGGCACAC
CGTTCGACGTATGACGCAACGAGATTATGACGCAACGAGATTGGGAAGTG
GTGAATATTCGACACGCACGGCATTGAGCTCCGATTCGGTTGTCGGGATG
TGGTCCGTTCAGAATTGTTGTCGTTTTCATCCCGGGCACTGATATGTAGC
TGAGTGAGATGTCTCATGCCGCGTTTGGCACCAAACGCGAAACAATCCCA
TCGCACATGAGCTGGCATCCTCGATAGTAACTAGACAGGTCATGTCCTGA
AGCTACAGGAAACAATTCAATCCATTCACCACCGGCGAATGGTCGTGCCA
AATTGTATTGTGAGTATGTGATGCATGGTGTAGAGAGAACTCAAACAGCA
GTGCTACCGACCAATAATCGGTGGATCTGACGAAATATTTATGCAGAATA
TCGATGGTTGGCAGCTGAGATGGTTGTGCGGGGAGATCACACGGCAAATA
GCCGACGTACCTTGCTTTTTTATTCGAGTATACATTTTTCAGGGTAAGAG
AGCCTGTGACCACGGGAATCGACCGCGTCAAGAGTTAGATCAGCCAGCGG
ATAGGGAGATCGGAACGGTTTTTATGCGGAGACAACAACAACAACCTCGC
GCCCACTTTTTTCATTTCTACTGCTGTGGTCATTAGGTGTACCATCTCGA
GCCGTCATTGGCAGTCGCGTCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18813:2447..3418-

>mRNA_Ecto-sp13_S_contig18813.5931.1 ID=mRNA_Ecto-sp13_S_contig18813.5931.1|Name=mRNA_Ecto-sp13_S_contig18813.5931.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=252bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18813:2447..3418- (Ectocarpus species13 EcNAP12_S_4_19m)
GATTCCTCTCTTGGAGCCTACCGCTTGGCCCCGAACGCCTTCGGCTCCCA
CAACGTCTCGGCGGGATGGCAGAGCAACGTGGACCTCTACCAGTACGGAG
CAGCCACGGCGTCTTGGCCGACAGCGGAAGAGGGGCAAGAGGTCATGCAG
CACGCTGTCTGTGGAGTACAGGAGGCGGGGGAACTTGTTCTTATACCGCC
GCGTCATTGGCACCAGGTGTACCATCTCGAGCCGTCATTGGCAGTCGCGT
CG
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