mRNA_Ecto-sp13_S_contig18809.5928.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig18809.5928.1 vs. uniprot
Match: D8LFA3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFA3_ECTSI) HSP 1 Score: 174 bits (442), Expect = 6.190e-49 Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = 1
Query: 10 QVPVCRLQQHPRQFVVTFPKAYHGGFSYGFNCGEAVNFAVPDWISYSRESTEAYRSASRMAALSHDKMVATLTMYLPDHDVKG 258
QVPVCRLQQHP QFVVTFPKAYHGGFSYGFNCGEAVNFAVPDWISYSRESTEAYRSASRMAALSHDKMVATLTMYLPDHDVKG
Sbjct: 680 QVPVCRLQQHPGQFVVTFPKAYHGGFSYGFNCGEAVNFAVPDWISYSRESTEAYRSASRMAALSHDKMVATLTMYLPDHDVKG 762
BLAST of mRNA_Ecto-sp13_S_contig18809.5928.1 vs. uniprot
Match: A0A6S8SBJ0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8SBJ0_9STRA) HSP 1 Score: 105 bits (261), Expect = 2.870e-25 Identity = 44/74 (59.46%), Postives = 61/74 (82.43%), Query Frame = 1
Query: 4 AQQVPVCRLQQHPRQFVVTFPKAYHGGFSYGFNCGEAVNFAVPDWISYSRESTEAYRSASRMAALSHDKMVATL 225
A +VP+ R+ Q+P +FVVTFP+A+HGGFSYGFNCGEAVNFA PDW+ ++R + E YR + R+A +SHD+++ TL
Sbjct: 79 ALEVPIHRICQNPGEFVVTFPQAFHGGFSYGFNCGEAVNFATPDWVQHARVANERYRRSGRLAVISHDRLMFTL 152
BLAST of mRNA_Ecto-sp13_S_contig18809.5928.1 vs. uniprot
Match: A0A8J2SEY4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SEY4_9STRA) HSP 1 Score: 105 bits (261), Expect = 1.830e-24 Identity = 44/74 (59.46%), Postives = 61/74 (82.43%), Query Frame = 1
Query: 4 AQQVPVCRLQQHPRQFVVTFPKAYHGGFSYGFNCGEAVNFAVPDWISYSRESTEAYRSASRMAALSHDKMVATL 225
A +VP+ R+ Q+P +FVVTFP+A+HGGFSYGFNCGEAVNFA PDW+ ++R + E YR + R+A +SHD+++ TL
Sbjct: 329 ALEVPIHRICQNPGEFVVTFPQAFHGGFSYGFNCGEAVNFATPDWVQHARVANERYRRSGRLAVISHDRLMFTL 402
BLAST of mRNA_Ecto-sp13_S_contig18809.5928.1 vs. uniprot
Match: A0A6U4ECJ0_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4ECJ0_9STRA) HSP 1 Score: 104 bits (259), Expect = 3.770e-24 Identity = 47/75 (62.67%), Postives = 56/75 (74.67%), Query Frame = 1
Query: 13 VPVCRLQQHPRQFVVTFPKAYHGGFSYGFNCGEAVNFAVPDWISYSRESTEAYRSASRMAALSHDKMVATLTMYL 237
VPVCR QH +FVVTFPKA+HGGFSYGFNCGEAVNFA P+WI Y RE+ YR +R + LSHD+++ L L
Sbjct: 353 VPVCRTVQHAGEFVVTFPKAFHGGFSYGFNCGEAVNFAPPEWIEYGREAALRYRIYARPSVLSHDRVLLLLAYNL 427
BLAST of mRNA_Ecto-sp13_S_contig18809.5928.1 vs. uniprot
Match: F0XYW6_AURAN (JmjC domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XYW6_AURAN) HSP 1 Score: 101 bits (252), Expect = 1.770e-23 Identity = 44/79 (55.70%), Postives = 58/79 (73.42%), Query Frame = 1
Query: 13 VPVCRLQQHPRQFVVTFPKAYHGGFSYGFNCGEAVNFAVPDWISYSRESTEAYRSASRMAALSHDKMVATLTMYLPDHD 249
VPV +L Q P FVVTFP+A+H GFSYGFNCGEAVNFA+P WI +++ + E YR R+A L HD+++ TL Y+ + D
Sbjct: 211 VPVYKLVQEPGTFVVTFPQAFHSGFSYGFNCGEAVNFAMPHWIEHAKLANERYRRIGRLAVLGHDRLIFTLARYVDELD 289
BLAST of mRNA_Ecto-sp13_S_contig18809.5928.1 vs. uniprot
Match: A0A7S0G863_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0G863_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 1.530e-22 Identity = 43/78 (55.13%), Postives = 57/78 (73.08%), Query Frame = 1
Query: 13 VPVCRLQQHPRQFVVTFPKAYHGGFSYGFNCGEAVNFAVPDWISYSRESTEAYRSASRMAALSHDKMVATLTMYLPDH 246
VP C++ Q+ +FVVTFP+A+HGGFS G N GEAVNFA PDWI + E+ E YR+ +R A SHD++ +TL YL +H
Sbjct: 367 VPACKILQNAGEFVVTFPRAFHGGFSMGPNVGEAVNFATPDWICHGAEANERYRAIARPAVFSHDRLTSTLANYLEEH 444
BLAST of mRNA_Ecto-sp13_S_contig18809.5928.1 vs. uniprot
Match: A0A7S4IRT4_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IRT4_9STRA) HSP 1 Score: 94.4 bits (233), Expect = 1.210e-20 Identity = 42/77 (54.55%), Postives = 56/77 (72.73%), Query Frame = 1
Query: 13 VPVCRLQQHPRQFVVTFPKAYHGGFSYGFNCGEAVNFAVPDWISYSRESTEAYRSASRMAALSHDKMVATLTMYLPD 243
VPV ++ Q +FVVTFP+A+HGGFSYG NCGEAVNFA DWIS ++ E YRS +R + SHD++ T++ +L D
Sbjct: 279 VPVYKILQRAGEFVVTFPRAFHGGFSYGPNCGEAVNFATHDWISQGADANERYRSFARPSVFSHDRLTFTMSNHLKD 355
BLAST of mRNA_Ecto-sp13_S_contig18809.5928.1 vs. uniprot
Match: A0A6U3NYJ8_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3NYJ8_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 1.310e-20 Identity = 41/75 (54.67%), Postives = 55/75 (73.33%), Query Frame = 1
Query: 13 VPVCRLQQHPRQFVVTFPKAYHGGFSYGFNCGEAVNFAVPDWISYSRESTEAYRSASRMAALSHDKMVATLTMYL 237
VPV ++ QH +FVVTFP+A+HGGFS G NCGEAVNFA DWI + +++E YRS +R A SHD++ T+ +L
Sbjct: 12 VPVYKILQHAGEFVVTFPRAFHGGFSLGPNCGEAVNFATHDWIHHGADASERYRSFARPAVFSHDRLTFTMANHL 86
BLAST of mRNA_Ecto-sp13_S_contig18809.5928.1 vs. uniprot
Match: A0A7S3ZPX7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZPX7_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 1.520e-20 Identity = 40/71 (56.34%), Postives = 55/71 (77.46%), Query Frame = 1
Query: 13 VPVCRLQQHPRQFVVTFPKAYHGGFSYGFNCGEAVNFAVPDWISYSRESTEAYRSASRMAALSHDKMVATL 225
VP+ L+Q P +FVVTFP+AYHGGFS GFN GEAVNFA PDW+ ++R + E YR+ +R+ + HD+++ TL
Sbjct: 302 VPMYALRQMPGEFVVTFPRAYHGGFSLGFNIGEAVNFATPDWVQHARLANEHYRTIARLGVVGHDRLMFTL 372
BLAST of mRNA_Ecto-sp13_S_contig18809.5928.1 vs. uniprot
Match: A0A7R9WKL4_9STRA (Hypothetical protein n=2 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WKL4_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 1.680e-20 Identity = 42/77 (54.55%), Postives = 55/77 (71.43%), Query Frame = 1
Query: 13 VPVCRLQQHPRQFVVTFPKAYHGGFSYGFNCGEAVNFAVPDWISYSRESTEAYRSASRMAALSHDKMVATLTMYLPD 243
VPV ++ Q +FVVTFP+A+HGGFSYG NCGEAVNFA DWIS ++ E YRS +R + SHD++ T+ +L D
Sbjct: 353 VPVYKILQRAGEFVVTFPRAFHGGFSYGPNCGEAVNFATHDWISQGADANERYRSFARPSVFSHDRLTFTMANHLKD 429 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18809.5928.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig18809.5928.1 >prot_Ecto-sp13_S_contig18809.5928.1 ID=prot_Ecto-sp13_S_contig18809.5928.1|Name=mRNA_Ecto-sp13_S_contig18809.5928.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=87bp MAQQVPVCRLQQHPRQFVVTFPKAYHGGFSYGFNCGEAVNFAVPDWISYSback to top mRNA from alignment at Ecto-sp13_S_contig18809:872..1374- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig18809.5928.1 ID=mRNA_Ecto-sp13_S_contig18809.5928.1|Name=mRNA_Ecto-sp13_S_contig18809.5928.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=503bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18809:872..1374- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18809:872..1374- >mRNA_Ecto-sp13_S_contig18809.5928.1 ID=mRNA_Ecto-sp13_S_contig18809.5928.1|Name=mRNA_Ecto-sp13_S_contig18809.5928.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=261bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18809:872..1374- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |