mRNA_Ecto-sp13_S_contig1880.5925.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1880.5925.1
Unique NamemRNA_Ecto-sp13_S_contig1880.5925.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1880.5925.1 vs. uniprot
Match: D8LNJ2_ECTSI (Hlip n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNJ2_ECTSI)

HSP 1 Score: 362 bits (929), Expect = 3.970e-120
Identity = 188/197 (95.43%), Postives = 192/197 (97.46%), Query Frame = 1 
Query:    1 QATSGIGSSLRVRPGRLSVALSAADGEGGSDSGEDMSDDDTSSAVATKPKRKVNAELDDLVSEMAGRSDDDPIVIPRGAGIAPMAPGPIKPDPIPGMDDDDIPGKIVLPPDVLAEQQKGLEKIAQQLRRERLDKEAEDAITFGFCPRAELWNGRSAMFGITVGMLTEYWTGQSIPQQIETFAQLLGLLPLDYDTYFQ 591
            QATSG GSS RVRPGRL VALSAADGEGGSDSGE+ +DDDTSSAVATKPKRKVN ELDDLVSEMAGRSDD+PIVIPRGAGIAPMAPGPIKPDPIPGMDDDDIPGKIVLPP+VLAEQQKGLEKIAQQLRRERLDKEAEDAITFGFCPRAELWNGRSAMFGITVGMLTEYWTGQSIPQQIETFAQLLGLLPLDYDTYFQ
Sbjct:   43 QATSGSGSSSRVRPGRLLVALSAADGEGGSDSGEETADDDTSSAVATKPKRKVNPELDDLVSEMAGRSDDEPIVIPRGAGIAPMAPGPIKPDPIPGMDDDDIPGKIVLPPEVLAEQQKGLEKIAQQLRRERLDKEAEDAITFGFCPRAELWNGRSAMFGITVGMLTEYWTGQSIPQQIETFAQLLGLLPLDYDTYFQ 239
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1880.5925.1 vs. uniprot
Match: A0A836CEG8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEG8_9STRA)

HSP 1 Score: 125 bits (313), Expect = 5.910e-30
Identity = 62/98 (63.27%), Postives = 80/98 (81.63%), Query Frame = 1 
Query:  295 DDDIPGKIVLPPDVLAEQQKGLEKIAQQLRRERLDKEAEDAITFGFCPRAELWNGRSAMFGITVGMLTEYWTGQSIPQQIETFAQLLGLLPLDYDTYF 588
            DD++PGKIV+    LA+QQ  LEK A+QLRR+RLD+EAE+A   G+ P AE+ NGR+AMF I VG+LTEYWTGQS+PQQ+ET A ++GLLPLDY++ F
Sbjct:   70 DDNVPGKIVVDDATLAQQQIDLEKYARQLRRQRLDREAEEARLLGWTPAAEINNGRAAMFFIVVGILTEYWTGQSMPQQVETMASVMGLLPLDYESMF 167
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1880.5925.1 vs. uniprot
Match: A0A7V5I693_9BACT (Uncharacterized protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A7V5I693_9BACT)

HSP 1 Score: 89.7 bits (221), Expect = 1.420e-17
Identity = 44/87 (50.57%), Postives = 60/87 (68.97%), Query Frame = 1 
Query:  304 IPGKIVLPPDVLAEQQKGLEKIAQQLRRERLDKEAEDAITFGFCPRAELWNGRSAMFGITVGMLTEYWTGQSIPQQIETFAQLLGLL 564
            +PG+  L    LAEQ++ L  +A++ +  RL KEAE    FGFC  AE+ NGR+AMF    GMLTEYWTGQ++PQQIE   ++LG++
Sbjct:   56 VPGRYKLSAVELAEQRRALRAVAERYKAARLAKEAESRRVFGFCRNAEVINGRTAMFFFVTGMLTEYWTGQTMPQQIELLLRILGII 142
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1880.5925.1 vs. uniprot
Match: M1V653_CYAM1 (Similar to high light inducible protein n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1V653_CYAM1)

HSP 1 Score: 89.7 bits (221), Expect = 6.710e-17
Identity = 44/87 (50.57%), Postives = 60/87 (68.97%), Query Frame = 1 
Query:  304 IPGKIVLPPDVLAEQQKGLEKIAQQLRRERLDKEAEDAITFGFCPRAELWNGRSAMFGITVGMLTEYWTGQSIPQQIETFAQLLGLL 564
            +PG+  L    LAEQ++ L  +A++ +  RL KEAE    FGFC  AE+ NGR+AMF    GMLTEYWTGQ++PQQIE   ++LG++
Sbjct:  119 VPGRYKLSAIELAEQRRALRAVAERYKAARLAKEAESRRVFGFCRNAEVINGRTAMFFFVTGMLTEYWTGQTMPQQIELLLRILGII 205
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1880.5925.1 vs. uniprot
Match: A0A7J7IMA7_9RHOD (Uncharacterized protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IMA7_9RHOD)

HSP 1 Score: 87.8 bits (216), Expect = 4.510e-16
Identity = 43/86 (50.00%), Postives = 59/86 (68.60%), Query Frame = 1 
Query:  307 PGKIVLPPDVLAEQQKGLEKIAQQLRRERLDKEAEDAITFGFCPRAELWNGRSAMFGITVGMLTEYWTGQSIPQQIETFAQLLGLL 564
            PG+  L    LAEQ++ +  +A++ + ER+ +EAE    FGFC  AE+ NGR+AMF    GMLTEYWTGQ++PQQIE   ++LG L
Sbjct:  137 PGRYKLSAAELAEQRRAIRAVAERYKAERIAREAEARRVFGFCRNAEIINGRTAMFFFATGMLTEYWTGQTMPQQIELLLRILGFL 222
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1880.5925.1 vs. uniprot
Match: A9BKE1_HEMAN (Hlip n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A9BKE1_HEMAN)

HSP 1 Score: 83.6 bits (205), Expect = 1.510e-15
Identity = 41/87 (47.13%), Postives = 61/87 (70.11%), Query Frame = 1 
Query:  304 IPGKIVLPPDVLAEQQKGLEKIAQQLRRERLDKEAEDAITFGFCPRAELWNGRSAMFGITVGMLTEYWTGQSIPQQIETFAQLLGLL 564
            IPGKI+L   V++E++  L+ ++++ ++ER+ KE  D   FGF   +E+ NGR AMF I  G+LTE WTGQ+IP QIET  + LG++
Sbjct:   45 IPGKIILSKTVISERELKLKSLSEKWKKERIAKENFDKKAFGFTKNSEILNGRIAMFFIITGLLTEIWTGQTIPDQIETIIRTLGII 131
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1880.5925.1 vs. uniprot
Match: A0A5J4YWB8_PORPP (Light-harvesting complex-like protein OHP2, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YWB8_PORPP)

HSP 1 Score: 84.0 bits (206), Expect = 2.580e-15
Identity = 42/86 (48.84%), Postives = 60/86 (69.77%), Query Frame = 1 
Query:  307 PGKIVLPPDVLAEQQKGLEKIAQQLRRERLDKEAEDAITFGFCPRAELWNGRSAMFGITVGMLTEYWTGQSIPQQIETFAQLLGLL 564
            PG   L P  LAEQ+K L  ++++ + ER+D+E E +  FG   RAE+ NGR AMF +  G+LTEYWTG++IP+Q+ET  + LGL+
Sbjct:   79 PGMRELTPAELAEQKKVLVALSEEWKAERMDREFEQSRLFGLTRRAEILNGRVAMFFLATGLLTEYWTGENIPEQVETLFRTLGLI 164
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1880.5925.1 vs. uniprot
Match: A0A7S1Y0X3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1Y0X3_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 3.510e-15
Identity = 40/86 (46.51%), Postives = 57/86 (66.28%), Query Frame = 1 
Query:  313 KIVLPPDVLAEQQKGLEKIAQQLRRERLDKEAEDAITFGFCPRAELWNGRSAMFGITVGMLTEYWTGQSIPQQIETFAQLLGLLPL 570
            ++ LP + + +Q   LE++ +   RER  +E E+A   G+ P AE WN R+AMFG+ VG+LTEYWTG+SIPQQ+    + LG L L
Sbjct:   79 RVPLPQEFVDKQAVALEELRKDFLRERYAREDEEAKMLGWVPAAETWNARAAMFGVVVGLLTEYWTGESIPQQVAGLLKTLGFLDL 164
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1880.5925.1 vs. uniprot
Match: A0A7S2P2S9_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P2S9_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 3.930e-15
Identity = 41/92 (44.57%), Postives = 64/92 (69.57%), Query Frame = 1 
Query:  298 DDIPGKIVLPPDVLAEQQKGLEKIAQQLRRERLDKEAEDAITFGFCPRAELWNGRSAMFGITVGMLTEYWTGQSIPQQIETFAQLLGLLPLD 573
            +++PGK+V+    LA+Q   L ++ ++ R+ER+ KE ED    G+ P+AE++NGR AMF + VG+LTEYWTG +IP QIE   ++ G + +D
Sbjct:   64 ENVPGKVVMNEIDLAKQVSALNQLEEKWRKERVYKEYEDKALLGWTPQAEMYNGRFAMFFLVVGLLTEYWTGVTIPGQIEEMLRVGGFIDVD 155
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1880.5925.1 vs. uniprot
Match: A0A6U3SNU5_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3SNU5_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 5.040e-15
Identity = 44/92 (47.83%), Postives = 61/92 (66.30%), Query Frame = 1 
Query:  301 DIPGKIVLPPDVLAEQQKGLEKIAQQLRRERLDKEAEDAITFGFCPRAELWNGRSAMFGITVGMLTEYWTGQSIPQQIETFAQLLGLLPLDY 576
            D+PGK+VL    LA Q   L K+ ++ R+ERL KE ++A   G+  +AE +NGR AMF + VG+LTEYWTG +IP QIE   ++ G +  DY
Sbjct:   88 DVPGKVVLNDVQLAAQVTALSKLEEKWRKERLQKEYDEARLLGWTSQAETYNGRFAMFFLVVGLLTEYWTGVTIPGQIEEMLRVGGFIGPDY 179
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1880.5925.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNJ2_ECTSI3.970e-12095.43Hlip n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNJ2_EC... [more]
A0A836CEG8_9STRA5.910e-3063.27Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7V5I693_9BACT1.420e-1750.57Uncharacterized protein n=1 Tax=bacterium TaxID=18... [more]
M1V653_CYAM16.710e-1750.57Similar to high light inducible protein n=1 Tax=Cy... [more]
A0A7J7IMA7_9RHOD4.510e-1650.00Uncharacterized protein n=1 Tax=Cyanidiococcus yan... [more]
A9BKE1_HEMAN1.510e-1547.13Hlip n=1 Tax=Hemiselmis andersenii TaxID=464988 Re... [more]
A0A5J4YWB8_PORPP2.580e-1548.84Light-harvesting complex-like protein OHP2, chloro... [more]
A0A7S1Y0X3_9STRA3.510e-1546.51Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2P2S9_9STRA3.930e-1544.57Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A6U3SNU5_9STRA5.040e-1547.83Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1880contigEcto-sp13_S_contig1880:3261..6853 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score316.2
Seed ortholog evalue8.7e-84
Seed eggNOG ortholog2880.D8LNJ2
Preferred nameHLIP
Model size1608
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009314,GO:0009416,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009628,GO:0009642,GO:0016020,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0055035
Exons3
EggNOG OGs2CXIH@1,2RXUG@2759
Ec32 ortholog descriptionChlorophyll a/b binding protein domain
Ec32 orthologEc-01_000400.1
Cds size489
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462961.9299982-UTR-Ecto-sp13_S_contig1880:3260..33651681462961.9299982-UTR-Ecto-sp13_S_contig1880:3260..3365Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1880 3261..3365 +
1681462961.977195-UTR-Ecto-sp13_S_contig1880:5839..68531681462961.977195-UTR-Ecto-sp13_S_contig1880:5839..6853Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1880 5840..6853 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462961.9410763-CDS-Ecto-sp13_S_contig1880:3365..35551681462961.9410763-CDS-Ecto-sp13_S_contig1880:3365..3555Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1880 3366..3555 +
1681462961.9501207-CDS-Ecto-sp13_S_contig1880:4444..46101681462961.9501207-CDS-Ecto-sp13_S_contig1880:4444..4610Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1880 4445..4610 +
1681462961.965135-CDS-Ecto-sp13_S_contig1880:5706..58391681462961.965135-CDS-Ecto-sp13_S_contig1880:5706..5839Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1880 5707..5839 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1880.5925.1prot_Ecto-sp13_S_contig1880.5925.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1880 3366..5839 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1880.5925.1

>prot_Ecto-sp13_S_contig1880.5925.1 ID=prot_Ecto-sp13_S_contig1880.5925.1|Name=mRNA_Ecto-sp13_S_contig1880.5925.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=163bp
MSDDDTSSAVATKPKRKVNAELDDLVSEMAGRSDDDPIVIPRGAGIAPMA
PGPIKPDPIPGMDDDDIPGKIVLPPDVLAEQQKGLEKIAQQLRRERLDKE
AEDAITFGFCPRAELWNGRSAMFGITVGMLTEYWTGQSIPQQIETFAQLL
GLLPLDYDTYFQ*
back to top

mRNA from alignment at Ecto-sp13_S_contig1880:3261..6853+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1880.5925.1 ID=mRNA_Ecto-sp13_S_contig1880.5925.1|Name=mRNA_Ecto-sp13_S_contig1880.5925.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3593bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1880:3261..6853+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGCAACCAGCGGGATTGGCAGCAGCTTGCGCGTACGGCCGGGCAGACT
GTCGGTGGCCTTGTCCGCCGCGGACGGCGAGGGGGGCAGCGACTCGGGGG
AAGACATGAGCGACGACGATACCTCTAGCGCGGTGGCGACGAAGCCGAAG
CGGAAGGTGAACGCGGAGTTGGACGACCTCGTGAGCGAGATGGCGGGAAG
GAGTGACGACGATCCCATCGTCATTCCGCGCGGGGCCGGGATTGCGCCCA
TGGCGCCGGGGCCGATCAAGCCTGATCCCATCCCCGGAATGGACGGTGAG
CCACGCGTTGTACTCAACTGCTTTCGTAGGCCGCCAAAGCTTCGGTTAAA
GGGTGAATGTTCCTGGACTCATTGTATCATCAAGCTCAAATCTGAATGGG
CCTCATCAGGATTTGATTTCTTCGATAGATACGACCGAAGCAGACCTCAC
CCGACACCATTATTACCTGCCGGGTGTTGTACTCTTGATGTGAAAGGGGG
CTAGTTGTACAACCCGCGGGGTGGGTGGCGGTGGGGTGTTCAATACGGTA
GGCAGTAGTGCCGGGTCGGTCTGGTCATGACCATGTGCCGCGTGTTTGGT
CTGGAAAGAGATCGTGCCGAGCGCACCGCGCTTGTTCATGCCGTTGGTTA
CGAAAGATTCTGCACGCCTTGGATCGACTTTCAAAGCTCGAGTAGCTCTG
CAGCAAGAAAGGAGACGGCGCCGAAGATGGCGGCGTTGGAACCATCTCGT
CGAGAGCTTCCGAACATGTATTGTTTGATCGTTGCATCCTCTTCGTCTTG
GGGTATTGGGGCTTTGAAAATGGGTCTAGGGGATGCGCTTTCTCACGAAA
TTGGAAGCATACGTGGCCGGTTGTATACAAAACGTAGACACCTACCTGTT
CGACCGCGAAACCGTTTTTTGTTAGTGTATTGGTCACGGGAGGTCCTACA
CGATGCTCTTATGCACATTGCACGCCAGCAGGAATGCCCAGATTCCCGTC
GAAGCATCGACACGTTGTATACCCACGCCATGGTAAGACACGTAACAGGC
TATTGCCGCAATATCTGAGAACCTTCTTTTTCCTCCCATGCAATTCGTGC
TCATTTATATAGGGATTGTTTATGTTTTCTCACCTAAACGGTCAATATTG
TGCGTTTTGACCATGACGAAAATACCGCTTGCAGACGACGACATCCCTGG
CAAGATCGTACTGCCGCCGGACGTGCTCGCGGAGCAACAGAAGGGGCTCG
AGAAGATCGCACAGCAGCTGAGGAGGGAGCGGCTTGACAAGGAGGCGGAG
GACGCAATCACCTTCGGATTCTGCCCCAGGGCAGAGCTGTGGAACGGGAG
GTATGTGTATACATGTATGTGTGCTCTTATCATCTACTCTGGCGCCAGTC
TACATACCTTTCGGTGTATGGTTGAAGTATCAGCCGGAGTCACAGCAGGA
AAGTCACACAGGACTTAGTGGGTGTGTTTTTGTGAATAGCCCGAGGGCAC
TTACCGGCTGACCAATGAAAAGATATCACTCTCAGTGCGGTTGACAACAC
AAAATGCTTCAAAGGACTACCATGATCTGGGACCCCGTGAGGGGGCCGTG
AGGGGGCGTCACGGGGGAGGTCTGTGTGGATGTGTGTGAGTGTGTATGTT
CTTCTGATGTACACTAGCGCCAGTCAGTCTACGCGCCTTGCGTTGTAAAT
GTTTGACGGATCAGCCGGAGGCACAAGGGATTTGTTTTATTCTGTACGTG
TTACTTTGATTCAAATAAATACATCGATCGTGCTACTTGGCCAAGGCGAT
GGCGCCAATGTCACCGGAAACAAGTTACACACCACCGCAGGGGCCTAAGA
AGGGCGTGTTAGTGTGTCTTCGAGCAGTGTCTTCCGCTTGAAGTGGGTGA
ACAATGAAAAAATATCATGACCAACAAGGTAGAAATCAGCGTTCGATTTT
GAACCACACCCAGAACACCACGAAAGGATTTTCTGAATCACACCGGCGTG
CCTACCAGTATATTACGGTGCAAGTCTTGTGAGCTACTGCACCAGTAAGG
CCGGTGGGATATTGTTCAGTTACACCCCTGTCGGAGTCATGGTACAGTAT
CGCGCCGGGGGCGTGCCATCCAAGAGGAAGAAGAACGACGCTGTTCAGTT
CAATTTACTGACCGGCCTTGGAGTCACATACCCCCTAAGACTGAACTAAG
CCACCAGCGATTGCGATGAAATTGCGAGCAGGAAATGACTGAAAGAAGAG
AGAAACGATCGCACCCCGGTGCCACCATCTGGCGGCACTCCGCGTTTGAG
CTCGGGGACTGCTTGAGCTCTCGCCGTTTTCTCGATGCTCCACCTTTGAG
CTCTGACAGGGCTTGCCTGATGCATGTGCTCTGTTCAACCGCTCGACCGT
GTCCCGTTGTTAACGTCGTGTGCTCGGTCCGTCCCCATCGCTGTAGGTCC
GCCATGTTTGGGATCACGGTGGGCATGCTCACGGAGTACTGGACGGGGCA
AAGCATCCCCCAGCAGATCGAGACGTTCGCGCAGCTCTTGGGACTGTTGC
CTTTGGACTACGACACGTACTTCCAGTAGCTGACTGACGATACACGCGGG
ACTCCTCCCCCCAGTTTCGCTTCTAATATTGATAAACGCTTAACAATCTC
GATGCTGATCGACAGGTATGAAGTGTATTGTAGTCTTCCGTGCATGCTTG
AGCTGGAAGAAGAGACCGCCCTCGGCAGTAGCAATACCACCGCGTTTTAC
GACAAAATCGTGGGGCGTTGTCCCTCGTGGTTTCATGCTTGGTGGGTCTC
TCTCACGTTGTAAGGGAAAGGAGACTCGCGTGTCCTGATCCATCGCGCTA
CGACCGAGAAGCAAGACATTGGAAGCTACACAAAATCAAGAGAGTAGTGG
CTAGATTGGGGAAACGTTTTGGGGTCGCTAGAGGCCAAACCAGCTCGTGT
CTAAAGTCAACACTCTTTTTTTTCGACATCGATTGCGAGCCTGGGTAGTT
TGATGTTGAGTCTCTAGTAAAGTTCTCGCTGGCATTGGCTGTACCAGCTT
TGTGCACTGTCCTCAGCGTGGAGTTGGTGAGGGCGTACCTAGGCAAACGG
GTAAGGCGGGACGACGGCAGGAATAAGCTTCACATCGCGTGGCGTTGCGT
TGAAGTATTAATAGGTGAAGGAATTAGAGTATGCTAATCAGGTGGTAGCT
TTCGCCACTGTGTATCTGAGGCTTTGCTCGTGGTCTCATTTTGCAGATAG
GGTGCTGGATGTCTTTATCCGTAAACACTGGTGCACGCGACACTTTTCTA
GGAGTTTGATCCGTCGTGGTACTTTTGTTCTCGAGGAAACGGTCTCCGCT
TGTCATGACCACGAGATAGATATAGAGAAACACCTGCAGGAGCGGTTGCA
CGTGGCGTGTAGTTATTCTCGTAGGTCTCGGCAGGAGATGACTATTGGTG
TTGTGGCCGTAGGTGTGCCACAGCTCTGTAAGTGCTTCTATCTTCTACGC
AACAAAGAACTGTTTACCAATCCAAACGCGTAGTTCTGTTGAACTCCTTT
CTTTTGGCGACTCTCCCAGGGGGTTCGTTCGTTCCCACATGCC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1880:3261..6853+

>mRNA_Ecto-sp13_S_contig1880.5925.1 ID=mRNA_Ecto-sp13_S_contig1880.5925.1|Name=mRNA_Ecto-sp13_S_contig1880.5925.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=489bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1880:3261..6853+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCGACGACGATACCTCTAGCGCGGTGGCGACGAAGCCGAAGCGGAA
GGTGAACGCGGAGTTGGACGACCTCGTGAGCGAGATGGCGGGAAGGAGTG
ACGACGATCCCATCGTCATTCCGCGCGGGGCCGGGATTGCGCCCATGGCG
CCGGGGCCGATCAAGCCTGATCCCATCCCCGGAATGGACGACGACGACAT
CCCTGGCAAGATCGTACTGCCGCCGGACGTGCTCGCGGAGCAACAGAAGG
GGCTCGAGAAGATCGCACAGCAGCTGAGGAGGGAGCGGCTTGACAAGGAG
GCGGAGGACGCAATCACCTTCGGATTCTGCCCCAGGGCAGAGCTGTGGAA
CGGGAGGTCCGCCATGTTTGGGATCACGGTGGGCATGCTCACGGAGTACT
GGACGGGGCAAAGCATCCCCCAGCAGATCGAGACGTTCGCGCAGCTCTTG
GGACTGTTGCCTTTGGACTACGACACGTACTTCCAGTAG
back to top