prot_Ecto-sp13_S_contig18793.5922.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig18793.5922.1
Unique Nameprot_Ecto-sp13_S_contig18793.5922.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length91
Homology
BLAST of mRNA_Ecto-sp13_S_contig18793.5922.1 vs. uniprot
Match: D7G698_ECTSI (Ribosome biogenesis protein BOP1 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G698_ECTSI)

HSP 1 Score: 180 bits (456), Expect = 1.220e-51
Identity = 84/90 (93.33%), Postives = 86/90 (95.56%), Query Frame = 0
Query:    1 QGEVQCVKFHVSKPFLFVATKQQVRIYHLIKQMLVKKLISGCKWISCIDVHPSGDHLIVGSYDRRVAWFDLDLAGTPYKTLKYHTRVCTA 90
            +GEVQCVKFHVSKPFLFVATKQQVRIYHLIKQMLVKKLISGCKWISCIDVHPSGDHLIVGSYDRRVAWFDLDLA TPYKTLKYHT+   A
Sbjct:  473 KGEVQCVKFHVSKPFLFVATKQQVRIYHLIKQMLVKKLISGCKWISCIDVHPSGDHLIVGSYDRRVAWFDLDLASTPYKTLKYHTKAVRA 562          
BLAST of mRNA_Ecto-sp13_S_contig18793.5922.1 vs. uniprot
Match: A0A6H5JI55_9PHAE (Ribosome biogenesis protein BOP1 homolog n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI55_9PHAE)

HSP 1 Score: 179 bits (453), Expect = 2.110e-50
Identity = 83/90 (92.22%), Postives = 86/90 (95.56%), Query Frame = 0
Query:    1 QGEVQCVKFHVSKPFLFVATKQQVRIYHLIKQMLVKKLISGCKWISCIDVHPSGDHLIVGSYDRRVAWFDLDLAGTPYKTLKYHTRVCTA 90
            +GEVQCVKFHVSKPFLFVATKQQVRIYHLIKQMLVKKLISGCKWISCIDVHP+GDHLIVGSYDRRVAWFDLDLA TPYKTLKYHT+   A
Sbjct:  713 KGEVQCVKFHVSKPFLFVATKQQVRIYHLIKQMLVKKLISGCKWISCIDVHPTGDHLIVGSYDRRVAWFDLDLASTPYKTLKYHTKAVRA 802          
BLAST of mRNA_Ecto-sp13_S_contig18793.5922.1 vs. uniprot
Match: W7TL91_9STRA (Ribosome biogenesis protein bop1 (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TL91_9STRA)

HSP 1 Score: 140 bits (353), Expect = 6.090e-40
Identity = 59/90 (65.56%), Postives = 75/90 (83.33%), Query Frame = 0
Query:    2 GEVQCVKFHVSKPFLFVATKQQVRIYHLIKQMLVKKLISGCKWISCIDVHPSGDHLIVGSYDRRVAWFDLDLAGTPYKTLKYHTRVCTAV 91
            G+VQ V FH  KPF F+AT+  VR+YHL+KQ+L+KKL+SGCKWIS +D+HP+GDH++V SYDRRV WFDLDL+  PYKTLKYH++   AV
Sbjct:   58 GQVQAVAFHPHKPFFFLATQTHVRVYHLVKQVLMKKLLSGCKWISSLDIHPTGDHVLVSSYDRRVVWFDLDLSSLPYKTLKYHSKAVRAV 147          
BLAST of mRNA_Ecto-sp13_S_contig18793.5922.1 vs. uniprot
Match: A0A7S3YFA3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YFA3_HETAK)

HSP 1 Score: 140 bits (352), Expect = 7.940e-40
Identity = 60/85 (70.59%), Postives = 73/85 (85.88%), Query Frame = 0
Query:    2 GEVQCVKFHVSKPFLFVATKQQVRIYHLIKQMLVKKLISGCKWISCIDVHPSGDHLIVGSYDRRVAWFDLDLAGTPYKTLKYHTR 86
            G+VQ  +FH SKPFLFVAT+  VR+YHL+KQ LVKK+++GCKWIS +DVHP+GDH++VGSYDRRV W DLDL+  PYKTLKYH R
Sbjct:   56 GQVQVARFHPSKPFLFVATQTAVRVYHLVKQALVKKVLTGCKWISAMDVHPTGDHVLVGSYDRRVVWCDLDLSSKPYKTLKYHAR 140          
BLAST of mRNA_Ecto-sp13_S_contig18793.5922.1 vs. uniprot
Match: A0A7S4RBR5_9STRA (Ribosome biogenesis protein BOP1 homolog n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RBR5_9STRA)

HSP 1 Score: 144 bits (364), Expect = 2.880e-38
Identity = 62/90 (68.89%), Postives = 76/90 (84.44%), Query Frame = 0
Query:    2 GEVQCVKFHVSKPFLFVATKQQVRIYHLIKQMLVKKLISGCKWISCIDVHPSGDHLIVGSYDRRVAWFDLDLAGTPYKTLKYHTRVCTAV 91
            GE+QC  FH +KPFLFVA+ Q VR+YHLIKQ +VK+L+SGC+WIS ID+HPSGDH+I+GS DRR+ WFDLDL+ TPYKTLKYH R   +V
Sbjct:  681 GEIQCACFHPTKPFLFVASIQHVRVYHLIKQSMVKRLLSGCRWISSIDIHPSGDHVIIGSLDRRMCWFDLDLSNTPYKTLKYHERAIRSV 770          
BLAST of mRNA_Ecto-sp13_S_contig18793.5922.1 vs. uniprot
Match: A0A7S2KDQ6_9STRA (Ribosome biogenesis protein BOP1 homolog n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KDQ6_9STRA)

HSP 1 Score: 142 bits (359), Expect = 1.370e-37
Identity = 61/91 (67.03%), Postives = 75/91 (82.42%), Query Frame = 0
Query:    1 QGEVQCVKFHVSKPFLFVATKQQVRIYHLIKQMLVKKLISGCKWISCIDVHPSGDHLIVGSYDRRVAWFDLDLAGTPYKTLKYHTRVCTAV 91
            +GE QC  FH SKPFLFVA KQ +RIYHL++Q +VK+L+SGC+WIS +DVHPSGDH+I GS DRR+ WFDLDL+ TPYKTLKYH +   +V
Sbjct:  681 KGEAQCACFHPSKPFLFVANKQHIRIYHLVQQTMVKRLLSGCRWISSLDVHPSGDHVIAGSLDRRMIWFDLDLSSTPYKTLKYHEKALRSV 771          
BLAST of mRNA_Ecto-sp13_S_contig18793.5922.1 vs. uniprot
Match: A0A1E7FQD8_9STRA (BOP1NT-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FQD8_9STRA)

HSP 1 Score: 141 bits (355), Expect = 3.170e-37
Identity = 62/91 (68.13%), Postives = 75/91 (82.42%), Query Frame = 0
Query:    1 QGEVQCVKFHVSKPFLFVATKQQVRIYHLIKQMLVKKLISGCKWISCIDVHPSGDHLIVGSYDRRVAWFDLDLAGTPYKTLKYHTRVCTAV 91
            +GE Q   FH +KPFLFVA++Q VR+YHL+KQ +VK+LISGC+WIS +D+H SGDHLIVGS DRR+ WFDLDL+ TPYKTLKYH R   AV
Sbjct:  502 KGEAQAACFHPNKPFLFVASQQHVRVYHLVKQAMVKRLISGCRWISSLDIHKSGDHLIVGSLDRRMVWFDLDLSSTPYKTLKYHERAVRAV 592          
BLAST of mRNA_Ecto-sp13_S_contig18793.5922.1 vs. uniprot
Match: B7GDR2_PHATC (Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GDR2_PHATC)

HSP 1 Score: 140 bits (353), Expect = 5.760e-37
Identity = 63/86 (73.26%), Postives = 73/86 (84.88%), Query Frame = 0
Query:    1 QGEVQCVKFHVSKPFLFVATKQQVRIYHLIKQMLVKKLISGCKWISCIDVHPSGDHLIVGSYDRRVAWFDLDLAGTPYKTLKYHTR 86
            +GE Q   FH +KPFLFVA++Q VRIYHL+KQ +VK+L SGC+WIS IDVHPSGDHLIVGS DRR+ WFDLDL+ TPYKTLKYH R
Sbjct:  493 KGETQLACFHPNKPFLFVASQQHVRIYHLVKQNMVKRLASGCRWISSIDVHPSGDHLIVGSLDRRMIWFDLDLSSTPYKTLKYHER 578          
BLAST of mRNA_Ecto-sp13_S_contig18793.5922.1 vs. uniprot
Match: A0A7S1Y6C4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y6C4_9STRA)

HSP 1 Score: 131 bits (329), Expect = 6.260e-37
Identity = 59/90 (65.56%), Postives = 71/90 (78.89%), Query Frame = 0
Query:    2 GEVQCVKFHVSKPFLFVATKQQVRIYHLIKQMLVKKLISGCKWISCIDVHPSGDHLIVGSYDRRVAWFDLDLAGTPYKTLKYHTRVCTAV 91
            GEVQ   FH +KPFLFVA+ Q +RIYHLI+Q LVK+L+SGC+WIS + +H +GDHLIVG+ DRR+ WFDLDL  TPYKTLKYH R    V
Sbjct:   75 GEVQLACFHPTKPFLFVASAQHIRIYHLIQQKLVKRLMSGCRWISSMQIHKTGDHLIVGTLDRRMIWFDLDLGTTPYKTLKYHERAVRQV 164          
BLAST of mRNA_Ecto-sp13_S_contig18793.5922.1 vs. uniprot
Match: K8YSG6_NANGC (Block of proliferation 1 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YSG6_NANGC)

HSP 1 Score: 140 bits (353), Expect = 9.340e-37
Identity = 59/90 (65.56%), Postives = 75/90 (83.33%), Query Frame = 0
Query:    2 GEVQCVKFHVSKPFLFVATKQQVRIYHLIKQMLVKKLISGCKWISCIDVHPSGDHLIVGSYDRRVAWFDLDLAGTPYKTLKYHTRVCTAV 91
            G+VQ V FH  KPF F+AT+  VR+YHL+KQ+L+KKL+SGCKWIS +D+HP+GDH++V SYDRRV WFDLDL+  PYKTLKYH++   AV
Sbjct:  210 GQVQAVAFHPHKPFFFLATQTHVRVYHLVKQVLMKKLLSGCKWISSLDIHPTGDHVLVSSYDRRVVWFDLDLSSLPYKTLKYHSKAVRAV 299          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18793.5922.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G698_ECTSI1.220e-5193.33Ribosome biogenesis protein BOP1 homolog n=1 Tax=E... [more]
A0A6H5JI55_9PHAE2.110e-5092.22Ribosome biogenesis protein BOP1 homolog n=1 Tax=E... [more]
W7TL91_9STRA6.090e-4065.56Ribosome biogenesis protein bop1 (Fragment) n=1 Ta... [more]
A0A7S3YFA3_HETAK7.940e-4070.59Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S4RBR5_9STRA2.880e-3868.89Ribosome biogenesis protein BOP1 homolog n=2 Tax=D... [more]
A0A7S2KDQ6_9STRA1.370e-3767.03Ribosome biogenesis protein BOP1 homolog n=1 Tax=L... [more]
A0A1E7FQD8_9STRA3.170e-3768.13BOP1NT-domain-containing protein n=1 Tax=Fragilari... [more]
B7GDR2_PHATC5.760e-3773.26Predicted protein (Fragment) n=1 Tax=Phaeodactylum... [more]
A0A7S1Y6C4_9STRA6.260e-3765.56Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
K8YSG6_NANGC9.340e-3765.56Block of proliferation 1 n=1 Tax=Nannochloropsis g... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 31..70
e-value: 0.0035
score: 26.6
IPR001680WD40 repeatPFAMPF00400WD40coord: 40..66
e-value: 0.004
score: 18.0
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 1..91
e-value: 1.1E-39
score: 138.3
IPR028598WD repeat BOP1/Erb1PANTHERPTHR17605RIBOSOME BIOGENESIS PROTEIN BOP1 BLOCK OF PROLIFERATION 1 PROTEINcoord: 1..91
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 2..90

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18793contigEcto-sp13_S_contig18793:1923..2946 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18793.5922.1mRNA_Ecto-sp13_S_contig18793.5922.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig18793 1923..2946 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig18793.5922.1 ID=prot_Ecto-sp13_S_contig18793.5922.1|Name=mRNA_Ecto-sp13_S_contig18793.5922.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=91bp
QGEVQCVKFHVSKPFLFVATKQQVRIYHLIKQMLVKKLISGCKWISCIDV
HPSGDHLIVGSYDRRVAWFDLDLAGTPYKTLKYHTRVCTAV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR028598BOP1/Erb1
IPR036322WD40_repeat_dom_sf