mRNA_Ecto-sp13_S_contig18793.5922.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18793.5922.1
Unique NamemRNA_Ecto-sp13_S_contig18793.5922.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18793.5922.1 vs. uniprot
Match: D7G698_ECTSI (Ribosome biogenesis protein BOP1 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G698_ECTSI)

HSP 1 Score: 180 bits (456), Expect = 1.220e-51
Identity = 84/90 (93.33%), Postives = 86/90 (95.56%), Query Frame = 1 
Query:    1 QGEVQCVKFHVSKPFLFVATKQQVRIYHLIKQMLVKKLISGCKWISCIDVHPSGDHLIVGSYDRRVAWFDLDLAGTPYKTLKYHTRVCTA 270
            +GEVQCVKFHVSKPFLFVATKQQVRIYHLIKQMLVKKLISGCKWISCIDVHPSGDHLIVGSYDRRVAWFDLDLA TPYKTLKYHT+   A
Sbjct:  473 KGEVQCVKFHVSKPFLFVATKQQVRIYHLIKQMLVKKLISGCKWISCIDVHPSGDHLIVGSYDRRVAWFDLDLASTPYKTLKYHTKAVRA 562
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BLAST of mRNA_Ecto-sp13_S_contig18793.5922.1 vs. uniprot
Match: A0A6H5JI55_9PHAE (Ribosome biogenesis protein BOP1 homolog n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI55_9PHAE)

HSP 1 Score: 179 bits (453), Expect = 2.110e-50
Identity = 83/90 (92.22%), Postives = 86/90 (95.56%), Query Frame = 1 
Query:    1 QGEVQCVKFHVSKPFLFVATKQQVRIYHLIKQMLVKKLISGCKWISCIDVHPSGDHLIVGSYDRRVAWFDLDLAGTPYKTLKYHTRVCTA 270
            +GEVQCVKFHVSKPFLFVATKQQVRIYHLIKQMLVKKLISGCKWISCIDVHP+GDHLIVGSYDRRVAWFDLDLA TPYKTLKYHT+   A
Sbjct:  713 KGEVQCVKFHVSKPFLFVATKQQVRIYHLIKQMLVKKLISGCKWISCIDVHPTGDHLIVGSYDRRVAWFDLDLASTPYKTLKYHTKAVRA 802
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BLAST of mRNA_Ecto-sp13_S_contig18793.5922.1 vs. uniprot
Match: W7TL91_9STRA (Ribosome biogenesis protein bop1 (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TL91_9STRA)

HSP 1 Score: 140 bits (353), Expect = 6.090e-40
Identity = 59/90 (65.56%), Postives = 75/90 (83.33%), Query Frame = 1 
Query:    4 GEVQCVKFHVSKPFLFVATKQQVRIYHLIKQMLVKKLISGCKWISCIDVHPSGDHLIVGSYDRRVAWFDLDLAGTPYKTLKYHTRVCTAV 273
            G+VQ V FH  KPF F+AT+  VR+YHL+KQ+L+KKL+SGCKWIS +D+HP+GDH++V SYDRRV WFDLDL+  PYKTLKYH++   AV
Sbjct:   58 GQVQAVAFHPHKPFFFLATQTHVRVYHLVKQVLMKKLLSGCKWISSLDIHPTGDHVLVSSYDRRVVWFDLDLSSLPYKTLKYHSKAVRAV 147
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BLAST of mRNA_Ecto-sp13_S_contig18793.5922.1 vs. uniprot
Match: A0A7S3YFA3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YFA3_HETAK)

HSP 1 Score: 140 bits (352), Expect = 7.940e-40
Identity = 60/85 (70.59%), Postives = 73/85 (85.88%), Query Frame = 1 
Query:    4 GEVQCVKFHVSKPFLFVATKQQVRIYHLIKQMLVKKLISGCKWISCIDVHPSGDHLIVGSYDRRVAWFDLDLAGTPYKTLKYHTR 258
            G+VQ  +FH SKPFLFVAT+  VR+YHL+KQ LVKK+++GCKWIS +DVHP+GDH++VGSYDRRV W DLDL+  PYKTLKYH R
Sbjct:   56 GQVQVARFHPSKPFLFVATQTAVRVYHLVKQALVKKVLTGCKWISAMDVHPTGDHVLVGSYDRRVVWCDLDLSSKPYKTLKYHAR 140
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BLAST of mRNA_Ecto-sp13_S_contig18793.5922.1 vs. uniprot
Match: A0A7S4RBR5_9STRA (Ribosome biogenesis protein BOP1 homolog n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RBR5_9STRA)

HSP 1 Score: 144 bits (364), Expect = 2.880e-38
Identity = 62/90 (68.89%), Postives = 76/90 (84.44%), Query Frame = 1 
Query:    4 GEVQCVKFHVSKPFLFVATKQQVRIYHLIKQMLVKKLISGCKWISCIDVHPSGDHLIVGSYDRRVAWFDLDLAGTPYKTLKYHTRVCTAV 273
            GE+QC  FH +KPFLFVA+ Q VR+YHLIKQ +VK+L+SGC+WIS ID+HPSGDH+I+GS DRR+ WFDLDL+ TPYKTLKYH R   +V
Sbjct:  681 GEIQCACFHPTKPFLFVASIQHVRVYHLIKQSMVKRLLSGCRWISSIDIHPSGDHVIIGSLDRRMCWFDLDLSNTPYKTLKYHERAIRSV 770
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BLAST of mRNA_Ecto-sp13_S_contig18793.5922.1 vs. uniprot
Match: A0A7S2KDQ6_9STRA (Ribosome biogenesis protein BOP1 homolog n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KDQ6_9STRA)

HSP 1 Score: 142 bits (359), Expect = 1.370e-37
Identity = 61/91 (67.03%), Postives = 75/91 (82.42%), Query Frame = 1 
Query:    1 QGEVQCVKFHVSKPFLFVATKQQVRIYHLIKQMLVKKLISGCKWISCIDVHPSGDHLIVGSYDRRVAWFDLDLAGTPYKTLKYHTRVCTAV 273
            +GE QC  FH SKPFLFVA KQ +RIYHL++Q +VK+L+SGC+WIS +DVHPSGDH+I GS DRR+ WFDLDL+ TPYKTLKYH +   +V
Sbjct:  681 KGEAQCACFHPSKPFLFVANKQHIRIYHLVQQTMVKRLLSGCRWISSLDVHPSGDHVIAGSLDRRMIWFDLDLSSTPYKTLKYHEKALRSV 771
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BLAST of mRNA_Ecto-sp13_S_contig18793.5922.1 vs. uniprot
Match: A0A1E7FQD8_9STRA (BOP1NT-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FQD8_9STRA)

HSP 1 Score: 141 bits (355), Expect = 3.170e-37
Identity = 62/91 (68.13%), Postives = 75/91 (82.42%), Query Frame = 1 
Query:    1 QGEVQCVKFHVSKPFLFVATKQQVRIYHLIKQMLVKKLISGCKWISCIDVHPSGDHLIVGSYDRRVAWFDLDLAGTPYKTLKYHTRVCTAV 273
            +GE Q   FH +KPFLFVA++Q VR+YHL+KQ +VK+LISGC+WIS +D+H SGDHLIVGS DRR+ WFDLDL+ TPYKTLKYH R   AV
Sbjct:  502 KGEAQAACFHPNKPFLFVASQQHVRVYHLVKQAMVKRLISGCRWISSLDIHKSGDHLIVGSLDRRMVWFDLDLSSTPYKTLKYHERAVRAV 592
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BLAST of mRNA_Ecto-sp13_S_contig18793.5922.1 vs. uniprot
Match: B7GDR2_PHATC (Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GDR2_PHATC)

HSP 1 Score: 140 bits (353), Expect = 5.760e-37
Identity = 63/86 (73.26%), Postives = 73/86 (84.88%), Query Frame = 1 
Query:    1 QGEVQCVKFHVSKPFLFVATKQQVRIYHLIKQMLVKKLISGCKWISCIDVHPSGDHLIVGSYDRRVAWFDLDLAGTPYKTLKYHTR 258
            +GE Q   FH +KPFLFVA++Q VRIYHL+KQ +VK+L SGC+WIS IDVHPSGDHLIVGS DRR+ WFDLDL+ TPYKTLKYH R
Sbjct:  493 KGETQLACFHPNKPFLFVASQQHVRIYHLVKQNMVKRLASGCRWISSIDVHPSGDHLIVGSLDRRMIWFDLDLSSTPYKTLKYHER 578
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BLAST of mRNA_Ecto-sp13_S_contig18793.5922.1 vs. uniprot
Match: A0A7S1Y6C4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y6C4_9STRA)

HSP 1 Score: 131 bits (329), Expect = 6.260e-37
Identity = 59/90 (65.56%), Postives = 71/90 (78.89%), Query Frame = 1 
Query:    4 GEVQCVKFHVSKPFLFVATKQQVRIYHLIKQMLVKKLISGCKWISCIDVHPSGDHLIVGSYDRRVAWFDLDLAGTPYKTLKYHTRVCTAV 273
            GEVQ   FH +KPFLFVA+ Q +RIYHLI+Q LVK+L+SGC+WIS + +H +GDHLIVG+ DRR+ WFDLDL  TPYKTLKYH R    V
Sbjct:   75 GEVQLACFHPTKPFLFVASAQHIRIYHLIQQKLVKRLMSGCRWISSMQIHKTGDHLIVGTLDRRMIWFDLDLGTTPYKTLKYHERAVRQV 164
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BLAST of mRNA_Ecto-sp13_S_contig18793.5922.1 vs. uniprot
Match: K8YSG6_NANGC (Block of proliferation 1 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YSG6_NANGC)

HSP 1 Score: 140 bits (353), Expect = 9.340e-37
Identity = 59/90 (65.56%), Postives = 75/90 (83.33%), Query Frame = 1 
Query:    4 GEVQCVKFHVSKPFLFVATKQQVRIYHLIKQMLVKKLISGCKWISCIDVHPSGDHLIVGSYDRRVAWFDLDLAGTPYKTLKYHTRVCTAV 273
            G+VQ V FH  KPF F+AT+  VR+YHL+KQ+L+KKL+SGCKWIS +D+HP+GDH++V SYDRRV WFDLDL+  PYKTLKYH++   AV
Sbjct:  210 GQVQAVAFHPHKPFFFLATQTHVRVYHLVKQVLMKKLLSGCKWISSLDIHPTGDHVLVSSYDRRVVWFDLDLSSLPYKTLKYHSKAVRAV 299
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18793.5922.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G698_ECTSI1.220e-5193.33Ribosome biogenesis protein BOP1 homolog n=1 Tax=E... [more]
A0A6H5JI55_9PHAE2.110e-5092.22Ribosome biogenesis protein BOP1 homolog n=1 Tax=E... [more]
W7TL91_9STRA6.090e-4065.56Ribosome biogenesis protein bop1 (Fragment) n=1 Ta... [more]
A0A7S3YFA3_HETAK7.940e-4070.59Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S4RBR5_9STRA2.880e-3868.89Ribosome biogenesis protein BOP1 homolog n=2 Tax=D... [more]
A0A7S2KDQ6_9STRA1.370e-3767.03Ribosome biogenesis protein BOP1 homolog n=1 Tax=L... [more]
A0A1E7FQD8_9STRA3.170e-3768.13BOP1NT-domain-containing protein n=1 Tax=Fragilari... [more]
B7GDR2_PHATC5.760e-3773.26Predicted protein (Fragment) n=1 Tax=Phaeodactylum... [more]
A0A7S1Y6C4_9STRA6.260e-3765.56Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
K8YSG6_NANGC9.340e-3765.56Block of proliferation 1 n=1 Tax=Nannochloropsis g... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18793contigEcto-sp13_S_contig18793:1923..2946 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score182.6
Seed ortholog evalue8.4e-44
Seed eggNOG ortholog2880.D7G698
Preferred nameERB1
Model size273
KEGG koko:K14824
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000027,GO:0000448,GO:0000460,GO:0000463,GO:0000466,GO:0000469,GO:0000470,GO:0000478,GO:0000479,GO:0002682,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007276,GO:0008150,GO:0008152,GO:0008283,GO:0009966,GO:0009987,GO:0010467,GO:0010646,GO:0016043,GO:0016070,GO:0016072,GO:0019843,GO:0019953,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0023051,GO:0030684,GO:0030686,GO:0030687,GO:0031974,GO:0031981,GO:0032501,GO:0032504,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0035206,GO:0035690,GO:0042127,GO:0042221,GO:0042254,GO:0042255,GO:0042273,GO:0042493,GO:0043021,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0044703,GO:0044877,GO:0046483,GO:0048583,GO:0048609,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051239,GO:0051302,GO:0051704,GO:0051716,GO:0051726,GO:0065003,GO:0065007,GO:0070013,GO:0070180,GO:0070545,GO:0070887,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901363,GO:1901796,GO:1902531,GO:1990904
Exons2
EggNOG free text desc.rRNA processing
EggNOG OGsKOG0650@1,KOG0650@2759
Ec32 ortholog descriptionBOP1, N-terminal domain
Ec32 orthologEc-10_001070.1
Cds size273
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462961.5308125-CDS-Ecto-sp13_S_contig18793:1922..20181681462961.5308125-CDS-Ecto-sp13_S_contig18793:1922..2018Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18793 1923..2018 +
1681462961.5471747-CDS-Ecto-sp13_S_contig18793:2769..29461681462961.5471747-CDS-Ecto-sp13_S_contig18793:2769..2946Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18793 2770..2946 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18793.5922.1prot_Ecto-sp13_S_contig18793.5922.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18793 1923..2946 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18793.5922.1

>prot_Ecto-sp13_S_contig18793.5922.1 ID=prot_Ecto-sp13_S_contig18793.5922.1|Name=mRNA_Ecto-sp13_S_contig18793.5922.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=91bp
QGEVQCVKFHVSKPFLFVATKQQVRIYHLIKQMLVKKLISGCKWISCIDV
HPSGDHLIVGSYDRRVAWFDLDLAGTPYKTLKYHTRVCTAV
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mRNA from alignment at Ecto-sp13_S_contig18793:1923..2946+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18793.5922.1 ID=mRNA_Ecto-sp13_S_contig18793.5922.1|Name=mRNA_Ecto-sp13_S_contig18793.5922.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1024bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18793:1923..2946+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGGAGAAGTGCAGTGCGTTAAGTTCCACGTGTCGAAGCCCTTCCTCTT
CGTGGCGACCAAGCAACAAGTCAGGATCTACCACCTCATCAAACAGGTGC
GTAGTACTTCTATGTTTTGATTGTATTGTTCGTTCGGCGGGGGTTGTGTA
AGTCCTGCTTGTGCTCGTTTTCTCTCCCTCCCGCTCTTTTTGTCCCTCTG
GCCCTGAATTACGTTGGGTGTTTTTGCCCTGTCTTCTCTCCATGCCATGC
TTTGGCATTGGTGTGGGTTGTGTGCCCCATCTACCATCTAGCCGCCTTGT
GGTGGTGGTACAAGCTCGTCTGTCGTGTGCGTGTTGAACTGCATGCATGC
CTGGAAACAGCGGTGTTGGTGTCCCTAGAAAGAGGTTAGGTGTAAACTGA
ATCGAGCGGAACATGATCACCCGAAAATTGGACAACTTTATCTCACGAGC
CATAGCTTTGCTTCGCTAGGGTAAGGTGAGAAGTACCGGCAACGATGTTC
ATGAGCAACGACAGATTTTGGAGATCTGAAAGTCGAGGTCGGTGGTGCTG
ATGCAGAGTTGGCGAGATAGGCATCACCCGTCAACGAGCACAGAGTAGTA
AATTATGGTATCATACGCGAGGCCGCATGGTAAGGCCGGTCCCCTCTTTA
CGGCCTGTGAAATCGCGTGACACAGACAGATGGATGCAATGCTGATGTTG
TCGGACACCCTTAATAGTGCCGGGTGCTCGGTGTTAAAGACCGGCCATGT
CCCTTGGCACCACCATGCGGCCTGATACAGGGGGACAAAACTGCTCCAAC
ACCCTCGATATTATTTGTTCGTGTGGCCGTCGCTGTGCTAAAATCAGATG
CTGGTGAAGAAGCTCATCAGCGGGTGCAAGTGGATAAGCTGCATCGACGT
ACACCCCTCCGGCGACCACCTGATCGTGGGAAGCTACGACAGGAGGGTGG
CGTGGTTCGACCTGGACCTCGCCGGCACTCCTTACAAGACACTCAAGTAC
CACACAAGGGTATGCACAGCAGTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18793:1923..2946+

>mRNA_Ecto-sp13_S_contig18793.5922.1 ID=mRNA_Ecto-sp13_S_contig18793.5922.1|Name=mRNA_Ecto-sp13_S_contig18793.5922.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=273bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18793:1923..2946+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGGAGAAGTGCAGTGCGTTAAGTTCCACGTGTCGAAGCCCTTCCTCTT
CGTGGCGACCAAGCAACAAGTCAGGATCTACCACCTCATCAAACAGATGC
TGGTGAAGAAGCTCATCAGCGGGTGCAAGTGGATAAGCTGCATCGACGTA
CACCCCTCCGGCGACCACCTGATCGTGGGAAGCTACGACAGGAGGGTGGC
GTGGTTCGACCTGGACCTCGCCGGCACTCCTTACAAGACACTCAAGTACC
ACACAAGGGTATGCACAGCAGTA
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