mRNA_Ecto-sp13_S_contig1879.5921.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1879.5921.1
Unique NamemRNA_Ecto-sp13_S_contig1879.5921.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1879.5921.1 vs. uniprot
Match: D8LCU0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCU0_ECTSI)

HSP 1 Score: 337 bits (863), Expect = 3.030e-111
Identity = 160/163 (98.16%), Postives = 162/163 (99.39%), Query Frame = 1
Query:  289 MNGIKLLKSDGWTCGAGGGATVYIFEYDRRFDQAYPESFVYYDFNEPLAVPDDLRGSVDYILMDPPYLNPECIGKFLETADVIARRPRAAVAGDGDGKEEAAPPVTPMMFITSPLNHAYLRENMGLRRTPYRLAFKSKFATPMSLYTNYPSDALGGWAEDEED 777
            MNGIKLLKSDGWTCGAGGGATVYIFEYDRRFDQAYPESFVYYDFNEPLAVPDDLRGSVDYILMDPPYLNPECIGKFLETADVIARRPRAAVAGDGDGKEEAAPPVTPMMFITSPLNHAYLRENMGLRRTPY+LAFKSKFATPMSLYTNYPSDALGGW E+EED
Sbjct:    1 MNGIKLLKSDGWTCGAGGGATVYIFEYDRRFDQAYPESFVYYDFNEPLAVPDDLRGSVDYILMDPPYLNPECIGKFLETADVIARRPRAAVAGDGDGKEEAAPPVTPMMFITSPLNHAYLRENMGLRRTPYQLAFKSKFATPMSLYTNYPSDALGGWVEEEED 163          
BLAST of mRNA_Ecto-sp13_S_contig1879.5921.1 vs. uniprot
Match: A0A835ZDP6_9STRA (Putative N6-adenine methyltransferase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDP6_9STRA)

HSP 1 Score: 156 bits (395), Expect = 1.190e-41
Identity = 74/144 (51.39%), Postives = 103/144 (71.53%), Query Frame = 1
Query:  352 VYIFEYDRRFDQAYPESFVYYDFNEPLAVPDDLRGSVDYILMDPPYLNPECIGKFLETADVIARRPRAAVAGDGDGKEEAAPP--VTPMMFITSPLNHAYLRENMGLRRTPYRLAFKSKFATPMSLYTNYPSDALGGWAEDEED 777
            V+IFEYD RF +AYP  FV YD+N PL VP+ LRG+ DY+L DPPYLNP+C+ +F +T  ++AR P +A         +AAP   VTPMMF+TSP NHA L  +MG+RRTP+++ F+SKFATP++++ NY S  LG +  ++ +
Sbjct:   16 VHIFEYDARFGKAYPVQFVQYDYNHPLDVPEHLRGACDYVLADPPYLNPQCVTEFFQTMQLLARVPWSA---------DAAPDAEVTPMMFVTSPRNHAQLLRDMGMRRTPFQVKFQSKFATPIAIFLNYRSTRLGDFVHEDPE 150          
BLAST of mRNA_Ecto-sp13_S_contig1879.5921.1 vs. uniprot
Match: A0A6G0XCF8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XCF8_9STRA)

HSP 1 Score: 150 bits (380), Expect = 9.020e-39
Identity = 91/233 (39.06%), Postives = 130/233 (55.79%), Query Frame = 1
Query:   67 LSADTLAALNAHLAVKGAAEGEEADSEGAKGTLVTEDFGLSQFWYDDDTQRAMAGEVLREARGGKAAIISAPSVMNGIKLLKSDGWTCGAGGGATVYIFEYDRRFDQAYPESFVYYDFNEPLAVPDDLRGSVDYILMDPPYLNPECIGKFLETADVIARRPRAAVAGDGDGKEEAAPPVTPMMFITSPLNHAYLRENMGLRRTPYRLAFKSKFATPMSLYTNYPSDALGGWAE 765
            LSA+TLAAL+AHLA   A   EE+       T ++EDF LSQFWYDD T   +A E L +++GG  A +S P+    +K L+ +           VYIFEYD RF   YP+ FV+YD+  PLAV     G  DY+L++PPYL  +C+  F ET  +I+R  +   +G    K+  A   TP +FI +      +RE +GL  + +   F+SK +  ++ Y NY S+  G + E
Sbjct:   12 LSAETLAALHAHLA---AVNTEES-------TDISEDFRLSQFWYDDKTGETLAREALEKSKGGPIAFLSTPAAFKALKKLEPER--------KDVYIFEYDHRFGDKYPDEFVFYDYIAPLAVDSKFHGFFDYVLVEPPYLTEQCLKGFGETMRLISRELKKTASG----KQVMA---TPNVFINTGNLRDVMREELGLEPSGFVPTFESKLSNRLTTYINYDSERFGPYEE 219          
BLAST of mRNA_Ecto-sp13_S_contig1879.5921.1 vs. uniprot
Match: W4FCM6_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FCM6_9STRA)

HSP 1 Score: 147 bits (370), Expect = 2.410e-37
Identity = 91/229 (39.74%), Postives = 125/229 (54.59%), Query Frame = 1
Query:   67 LSADTLAALNAHLAVKGAAEGEEADSEGAKGTLVTEDFGLSQFWYDDDTQRAMAGEVLREARGGKAAIISAPSVMNGIKLLKSDGWTCGAGGGATVYIFEYDRRFDQAYPESFVYYDFNEPLAVPDDLRGSVDYILMDPPYLNPECIGKFLETADVIARRPRAAVAGDGDGKEEAAPPVTPMMFITSPLNHAYLRENMGLRRTPYRLAFKSKFATPMSLYTNYPSDALG 753
            LSA+TLAAL AHLA    A+ E AD E      V+EDF LSQFWYDD T  A+A E L  ++GG  A +S P+    +K L+ +           VYIFEYD RF Q Y + FV+YD+N PL V        DY+L++PPYL  +C+  F ET  +I+R     V     GK+     +TP +FI S      + + +GL  + +   F+SK +  ++ Y NY S+  G
Sbjct:    9 LSAETLAALQAHLAATQIAD-ESADDE------VSEDFRLSQFWYDDVTGEALAREALEMSKGGPIAFLSTPAAYKALKKLEPER--------KNVYIFEYDHRFGQKYGDEFVFYDYNAPLDVDAKFHNFFDYVLVEPPYLTEQCMKGFGETMKLISRE----VVPTDHGKKVM---ITPNVFINSGALKEAMADELGLTPSGFVPTFESKLSNRLTTYVNYSSERFG 215          
BLAST of mRNA_Ecto-sp13_S_contig1879.5921.1 vs. uniprot
Match: W2PIG9_PHYPN (Uncharacterized protein n=16 Tax=Phytophthora TaxID=4783 RepID=W2PIG9_PHYPN)

HSP 1 Score: 146 bits (369), Expect = 4.560e-37
Identity = 90/237 (37.97%), Postives = 128/237 (54.01%), Query Frame = 1
Query:   67 LSADTLAALNAHLAVKGAAEGEEADSEGAKGTLVTEDFGLSQFWYDDDTQRAMAGEVLREARGGKAAIISAPSVMNGIKLLKSDGWTCGAGGGATVYIFEYDRRFDQAYPESFVYYDFNEPLAVPDDLRGSVDYILMDPPYLNPECIGKFLETADVIARRPRAAVAGDGDGKEEAAPPVTPMMFITSPLNHAYLRENMGLRRTPYRLAFKSKFATPMSLYTNYPSDALGGWAEDEED 777
            LSADTLAAL AHL  +          +  K   V+EDF LSQFWYDD T RA+A E + +++  + A +S P+       LK    +     G  V++FEYDRRFD+ Y   FV+Y++NEP  +PD      DY+L+DPPYLN  C+GKF ET   +A+   +       GK+  A  +TP  FIT+ +    +  ++G   + +   F+SK +     YTNY S+  G   E+  D
Sbjct:    9 LSADTLAALQAHLQTQ----------QAQKDAAVSEDFRLSQFWYDDRTGRALAQEAIDQSKEKRIAFVSTPAAYR--DFLKIQEESDSPIKGDNVFLFEYDRRFDEKYSGHFVFYNYNEPTNLPDKFHHFFDYVLVDPPYLNTNCMGKFAETMRWLAKDVESV-----PGKK--AKILTPCTFITARMLRKDIYADLGFTPSGFTPTFESKLSNQFLTYTNYRSERFGESTENFGD 226          
BLAST of mRNA_Ecto-sp13_S_contig1879.5921.1 vs. uniprot
Match: A0A3R7K1S2_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7K1S2_9STRA)

HSP 1 Score: 146 bits (369), Expect = 4.690e-37
Identity = 89/242 (36.78%), Postives = 128/242 (52.89%), Query Frame = 1
Query:   67 LSADTLAALNAHLAVKGAAEGEEADSEGAKGTLVTEDFGLSQFWYDDDTQRAMAGEVLREARGGKAAIISAPSVMNGIKLLKSDGWTCGAGGGATVYIFEYDRRFDQAYPESFVYYDFNEPLAVPDDLRGSVDYILMDPPYLNPECIGKFLETADVIARRPRAAVAGDGDGKEEAAPPVTPMMFITSPLNHAYLRENMGLRRTPYRLAFKSKFATPMSLYTNYPSDALG------GWAEDEE 774
            LSADTLAAL AHL             + A+   V+EDF LSQFWYDD T R +A E +  ++    A +S P+       ++ +  T     G  V++FE+DRRFD+ Y + FV+YD+N P  +P+      DY+L+DPPYLNP C+GKF ET   ++R   A V G  D        + P  FIT+ +    +  ++G   + +   F+SK +     YTNY S+  G      G ++DEE
Sbjct:    9 LSADTLAALQAHLQ----------SQQAAQDANVSEDFRLSQFWYDDKTGRTLAQEAVDHSKDKHIAFVSTPAAYRDFLKIQEESDT--PINGDNVFLFEFDRRFDEKYGDHFVFYDYNTPTELPEKFHHFFDYVLVDPPYLNPNCMGKFAETMRWLSRDVEA-VTGQNDKI------LNPCTFITARMLRKNIYADLGFTPSGFYPTFESKLSNQFLTYTNYRSECFGESTEEFGDSDDEE 231          
BLAST of mRNA_Ecto-sp13_S_contig1879.5921.1 vs. uniprot
Match: A0A024UFC1_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UFC1_9STRA)

HSP 1 Score: 145 bits (365), Expect = 1.210e-36
Identity = 89/237 (37.55%), Postives = 125/237 (52.74%), Query Frame = 1
Query:   67 LSADTLAALNAHLAVKGAAEGEEADSEGAKGTLVTEDFGLSQFWYDDDTQRAMAGEVLREARGGKAAIISAPSVMNGIKLLKSDGWTCGAGGGATVYIFEYDRRFDQAYPESFVYYDFNEPLAVPDDLRGSVDYILMDPPYLNPECIGKFLETADVIARRPRAAVAGDGDGKEEAAPPVTPMMFITSPLNHAYLRENMGLRRTPYRLAFKSKFATPMSLYTNYPSDALGGWAEDEED 777
            LSA+TLAAL AHLA   A   EE++        V+EDF LSQFWYD  T  A+A E   +++GG  A +S P+    +K L  D           VY+FEYD RF++ YP  FV+YD+N PLA+    +   DY+L+DPPYLN  C+ KF +T   +++     V+  G  +       TP  FIT+ +    +  ++G   T +   F SK +     YTNY S+  G   +D  D
Sbjct:    8 LSAETLAALQAHLAT--AKLNEESE--------VSEDFRLSQFWYDSRTGDALAAEAFEQSKGGPIAFVSTPAAFKALKALHPDR--------KDVYLFEYDHRFEEKYPTEFVFYDYNTPLALDSKFQHFFDYVLVDPPYLNINCMSKFAQTMRFLSKD----VSARGQIQ-------TPNAFITAHMLRKDIAADLGFTPTGFVPTFDSKLSNRFLTYTNYASERFGRCDDDFSD 215          
BLAST of mRNA_Ecto-sp13_S_contig1879.5921.1 vs. uniprot
Match: A0A6G0WNY0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WNY0_9STRA)

HSP 1 Score: 143 bits (360), Expect = 6.210e-36
Identity = 88/237 (37.13%), Postives = 125/237 (52.74%), Query Frame = 1
Query:   67 LSADTLAALNAHLAVKGAAEGEEADSEGAKGTLVTEDFGLSQFWYDDDTQRAMAGEVLREARGGKAAIISAPSVMNGIKLLKSDGWTCGAGGGATVYIFEYDRRFDQAYPESFVYYDFNEPLAVPDDLRGSVDYILMDPPYLNPECIGKFLETADVIARRPRAAVAGDGDGKEEAAPPVTPMMFITSPLNHAYLRENMGLRRTPYRLAFKSKFATPMSLYTNYPSDALGGWAEDEED 777
            LSA+TLAAL AHLA   A   EE++        V+EDF LSQFWYD  T  A+A E L E+ GG  A +S P+    +K ++ D           VY+FEYD RF++ YP  FV+YD+N PL +         Y+L+DPPYLN  C+ KF +T   +++        D  G+ +     TP  FIT+ +    + +++G   + +   F+SK +     YTNY S+  G   ED  D
Sbjct:    8 LSAETLAALQAHLAT--AKLNEESE--------VSEDFRLSQFWYDKKTGDALALEALEESNGGPIAFVSTPAAFKALKAIEPDR--------KDVYLFEYDHRFEEKYPMEFVFYDYNTPLEIDAKFHHFFSYVLVDPPYLNVNCMSKFAQTMRWLSKDV------DSQGRIQ-----TPNAFITAQMLRKDIYKDLGFTPSGFIPTFESKLSNQFLTYTNYTSERFGPCDEDFSD 215          
BLAST of mRNA_Ecto-sp13_S_contig1879.5921.1 vs. uniprot
Match: A0A485LNA9_9STRA (Aste57867_23683 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LNA9_9STRA)

HSP 1 Score: 142 bits (358), Expect = 1.300e-35
Identity = 91/236 (38.56%), Postives = 127/236 (53.81%), Query Frame = 1
Query:   67 LSADTLAALNAHLA---VKGAAEGEEADSEGAKGTLVTEDFGLSQFWYDDDTQRAMAGEVLREARGGKAAIISAPSVMNGIKLLKSDGWTCGAGGGATVYIFEYDRRFDQAYPESFVYYDFNEPLAVPDDLRGSVDYILMDPPYLNPECIGKFLETADVIARRPRAAVAGDGDGKEEAAPPVTPMMFITSPLNHAYLRENMGLRRTPYRLAFKSKFATPMSLYTNYPSDALGGWAE 765
            LS +TLAAL AHLA   V+ A    E D        V+EDF LSQFWYDD T  A+A E L +++GG  A +S P+    +K L+ +           VYIFEYD RF Q Y + FV+YD+N PL V        DY+L++PPYL   C+  F ET  +I+R+         +G+++    VTP +FI S      + E +GL  + +   F+SK +  ++ Y NY SD  G + E
Sbjct:    9 LSPETLAALQAHLATVQVEDAVASTEKD--------VSEDFRLSQFWYDDVTGEALAREALEKSKGGPIAFLSTPAAFKALKKLEPER--------KDVYIFEYDHRFGQKYGDQFVFYDYNAPLDVDAKFHKFFDYVLVEPPYLTETCMKGFGETMRLISRQVTRE-----EGQKDVL--VTPNVFINSGALREAMFEELGLTPSGFVPTFESKLSNRLTTYINYESDRFGKYDE 221          
BLAST of mRNA_Ecto-sp13_S_contig1879.5921.1 vs. uniprot
Match: A0A1V9ZB50_9STRA (N(6)-adenine-specific DNA methyltransferase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZB50_9STRA)

HSP 1 Score: 142 bits (357), Expect = 1.850e-35
Identity = 90/234 (38.46%), Postives = 122/234 (52.14%), Query Frame = 1
Query:   67 LSADTLAALNAHLAVKGAAEGEEADSEGAKGTLVTEDFGLSQFWYDDDTQRAMAGEVLREARGGKAAIISAPSVMNGIKLLKSDGWTCGAGGGATVYIFEYDRRFDQAYPESFVYYDFNEPLAVPDDLRGSVDYILMDPPYLNPECIGKFLETADVIARRPRAAVAGDGDGKEEAAPPVTPMMFITSPLNHAYLRENMGLRRTPYRLAFKSKFATPMSLYTNYPSDALGGWAED 768
            LSA+TLAAL AHL    AA+ EE D++      V+EDF LSQFWYD  T  A+A E +  + GG  A +S P+    +K L  D           VY+FEYD RF   YP+ F +YD+N PL V        DY+L+DPPYLN  C+ KF ET  ++++   A     G  +       TP  FIT+ +    + + +G   T +   F+SK +     YTNY S+  G   ED
Sbjct:    8 LSAETLAALQAHLT---AAKLEE-DND------VSEDFRLSQFWYDAKTGDALALEAMDHSNGGPIAFVSTPAAFKALKALYPDR--------DNVYLFEYDYRFQDKYPDEFAFYDYNSPLEVDAKFHHFFDYVLVDPPYLNTNCMSKFAETMRLLSKNVDAKDGAKGIIR-------TPNAFITASVLRKDMFKELGFTPTGFVPTFESKLSNHFLTYTNYTSERFGPCTED 216          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1879.5921.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCU0_ECTSI3.030e-11198.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZDP6_9STRA1.190e-4151.39Putative N6-adenine methyltransferase-domain-conta... [more]
A0A6G0XCF8_9STRA9.020e-3939.06Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
W4FCM6_9STRA2.410e-3739.74Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
W2PIG9_PHYPN4.560e-3737.97Uncharacterized protein n=16 Tax=Phytophthora TaxI... [more]
A0A3R7K1S2_9STRA4.690e-3736.78Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A024UFC1_9STRA1.210e-3637.55Uncharacterized protein n=3 Tax=Aphanomyces invada... [more]
A0A6G0WNY0_9STRA6.210e-3637.13Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A485LNA9_9STRA1.300e-3538.56Aste57867_23683 protein n=1 Tax=Aphanomyces stella... [more]
A0A1V9ZB50_9STRA1.850e-3538.46N(6)-adenine-specific DNA methyltransferase n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1879contigEcto-sp13_S_contig1879:11139..15405 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score339.7
Seed ortholog evalue1.2e-90
Seed eggNOG ortholog2880.D8LCU0
Preferred nameEFM5
Model size1626
KEGG koko:K03953,ko:K16546
KEGG TC3.D.1.6
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00146
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0016278,GO:0016279,GO:0016740,GO:0016741,GO:0018022,GO:0018023,GO:0018193,GO:0018205,GO:0019538,GO:0032259,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0140096,GO:1901564
Exons7
EggNOG free text desc.methyltransferase activity
EggNOG OGsKOG3350@1,KOG3350@2759
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-07_006880.1
Cds size780
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1879.5921.1prot_Ecto-sp13_S_contig1879.5921.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1879 11139..14559 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462961.4072669-CDS-Ecto-sp13_S_contig1879:11138..112641681462961.4072669-CDS-Ecto-sp13_S_contig1879:11138..11264Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1879 11139..11264 +
1681462961.420793-CDS-Ecto-sp13_S_contig1879:11920..119911681462961.420793-CDS-Ecto-sp13_S_contig1879:11920..11991Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1879 11921..11991 +
1681462961.4372225-CDS-Ecto-sp13_S_contig1879:12404..125101681462961.4372225-CDS-Ecto-sp13_S_contig1879:12404..12510Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1879 12405..12510 +
1681462961.4466166-CDS-Ecto-sp13_S_contig1879:12756..128601681462961.4466166-CDS-Ecto-sp13_S_contig1879:12756..12860Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1879 12757..12860 +
1681462961.457701-CDS-Ecto-sp13_S_contig1879:13374..134591681462961.457701-CDS-Ecto-sp13_S_contig1879:13374..13459Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1879 13375..13459 +
1681462961.4723933-CDS-Ecto-sp13_S_contig1879:14132..142651681462961.4723933-CDS-Ecto-sp13_S_contig1879:14132..14265Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1879 14133..14265 +
1681462961.4871142-CDS-Ecto-sp13_S_contig1879:14404..145591681462961.4871142-CDS-Ecto-sp13_S_contig1879:14404..14559Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1879 14405..14559 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462961.502064-UTR-Ecto-sp13_S_contig1879:14559..154051681462961.502064-UTR-Ecto-sp13_S_contig1879:14559..15405Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1879 14560..15405 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1879.5921.1

>prot_Ecto-sp13_S_contig1879.5921.1 ID=prot_Ecto-sp13_S_contig1879.5921.1|Name=mRNA_Ecto-sp13_S_contig1879.5921.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=260bp
MSRSRSSSTSSDGESPEITLDALSADTLAALNAHLAVKGAAEGEEADSEG
AKGTLVTEDFGLSQFWYDDDTQRAMAGEVLREARGGKAAIISAPSVMNGI
KLLKSDGWTCGAGGGATVYIFEYDRRFDQAYPESFVYYDFNEPLAVPDDL
RGSVDYILMDPPYLNPECIGKFLETADVIARRPRAAVAGDGDGKEEAAPP
VTPMMFITSPLNHAYLRENMGLRRTPYRLAFKSKFATPMSLYTNYPSDAL
GGWAEDEED*
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mRNA from alignment at Ecto-sp13_S_contig1879:11139..15405+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1879.5921.1 ID=mRNA_Ecto-sp13_S_contig1879.5921.1|Name=mRNA_Ecto-sp13_S_contig1879.5921.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4267bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1879:11139..15405+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTCGCTCCCGGTCGTCAAGCACTTCCAGCGATGGCGAGTCTCCTGA GATCACACTCGATGCGTTGTCGGCTGATACTTTGGCGGCGCTCAATGCGC ACCTTGCAGTGAAGGGCGCGGCTGAGGTGACAGGCGATTGGTTGATGCGT AGATTTGGTTTGTACATCTGGCTTTATCCGCAACACGAGGTACACGTAGG GGTAAAACAGGCAACACGACCCCGGCACCAATATTCTGGCACAGATTGTA TTCTAGCACATCTAGCTTGCAGCTGCGAGCAGAGCAGAGGAGTAGGTGTT CAGTGTTGAAAGTTCAAAGTTCAAACCATTGTCAGCAAAGTCAGAGAACT AACAGTCCCGCCAGCTAACAGTCCCGTTTAGCGCGCGAGGGGGGTACACG AAACGAAACAGGTTCACAGGCTCCCTTCAGATTGTACAGCAGTCGTCCCT GGTTTGGACATCATCTGGGCAAATCTATGTGTCCAGCGACCGAACGCTTC GTTCACGTTTCCGGGAAGCTCTTGACAACATTTTTCCAACGCCACCCTTT TTCGGCGCGAGCACCTTTCTCCCGGGACAAAAATCGGTTCTGCCCAACAT AACATCATCCTGCTGATCTGACACATCGCGCATTACGCTTTGTCCGCCCG GGTACTCGGTACATTGCCACAACCTTAACTATGCAAACCACAACTAGAGC GTAGCCCGTACATCTCTCGCAGGAGATCGACACTGACAACAACACCCTCC ACTTATGCACCCGTGATGTTGTGCCCCGGAAGGGCGAGGAGGCGGATTCC GAAGGAGCGAAGGGCACGTTGGTGACCGAGGACTTCGGCCTGTCTCAGTT TTGGTAAGAGTCGTACCTTTCGTGCATACAGGTAGGTTTGACAGCGATTA GACTGCTGTAGTTGCTCTGTGGAATAGGTTGATTCCGTGTACCGCAAGAG GCTATCGCATGAAAGTTGCTGCCGTCAAACGCCTGCGAAACGCCAAGCAA TGCCCATCAGGATGTTGGCTGGCTTCCCCGAGAATGCATGAAGGATGTGT GTTCCCACTTTGGCGAAAGTATTCAGGAAGGCCAATGCTACGCTTGTGCG GGTTGTCTCATCCACGCAGGTGAACAGACAACAGTAGGTGCCGGTGCTAG GCCTCGCCTTTTTTTAACGAAGACCCTTCTTTGCTGTACAATGTAGGAAC TATTTCTTGCGCCAATCGAAGATTGATTTTCGGGGAACTTTACGAAGGCG TTCGCGAACGATTCAGGTACGACGATGACACTCAGCGAGCGATGGCCGGA GAGGTCCTGAGAGAGGCCCGGGGCGGAAAGGCCGCGATAATTAGCGCCCC TTCCGTGATGAACGGCATCAAGGTGCGGCAGTCTGTGTTGTCCTGCTCGA CGAAACACTTTCCGAGTGCGACGATGAGTATTTTGAACTTTGCACTTTAT CTCATTTGCACACGTAGTTCTTTCTTGGACGTGGATTGAAAAAGAAGGCC CTCCCTCGTTTCAGTTTCTCGCGGCGATCGGCGACAAATATGAATCTTTC ATGCACAGAAGACACGTGCGGATTATCCGCCTTCCTCCGTATTTCATACA ACCGTGACACCGCTGCAGTTGTTAAAGTCCGACGGCTGGACCTGTGGTGC GGGGGGCGGGGCGACGGTGTACATCTTCGAGTACGATCGACGCTTCGACC AGGCGTATCCAGAGTCCTTCGTGTGAGTGAAGAGGGCACCGGGCAAGCTT CATGCGCGCACTCAAAGTCTCCCTAGCCGGCAAGCCCTCCAGGAAACGAT CCTTCAGATACTTTTTTGACGTCATGTTTGTTGAAACGGCATCTTGTTCT TGGGGTTTCCCCGCCATTTTTTACCGTCCGATTGGAAGGTTGGTCCATTG TTTGCTTTAGATAGTGCATAGATGGGGTGGTCGCTTGTAGATGAATGAGG TCCAGCCCATTGCGCCTACTCAGAGTCGGGGTTGTCGGTTGTCTCTTCTA GATGCTTGTGTTTAGCGGTGGTTGTCAAAAGTCTACTCTGGCCGACCGGT TTCCTACGGTCGGGGGGCGCTATGCGCGCGATGCTGCTGCTGCAATTTCG CGAACAACAACAGCACCAGAGTATCAGAAATGGTAGCGAATCCTCCGCCA CCACAACCCCGCCTGGCGTCAAACGTTATGTGGTACCCCCCCCCCACCCT TTTCTCTCTCTCTCTCTCTCGACGGATACAATGAAGGTACTACGATTTTA ACGAACCTTTGGCGGTACCCGACGATCTGCGAGGGTCTGTCGACTACATT CTCATGGACCCGCCATACTTGGTGAGCAAAAAAGAGAGAGGGCATGGCTG GCGGGAAGGCGGTCAAGGGACGCTTGTGATGGGGGAATGGAATCGTGGAT TGAAATGGGAGAAGAAATGTCAGGGAGGAAGCAGGCAGCGTGATCGCTGT CAGTGGGGTAGAGTTTTAAAGGCAACGACGACGGACTTGAGAGCTGGCCG CCACGCTCTGTGAATTATTGCGACATCCGCAGCAGCCATGTTCGCTTGTT TCTAAGCTTACCACCGCGGCATTTACCCTTGTTTCAATGTTGCCGTCGAC AAAAAGATCAAGCGCGATACATCGAGAGGCCACGAGACATTCAACACATT CAACCCGAGCGTTCACTTTTGCCCTTCCTCGAGCACAATCCTTTTCTCAG GAAGACGATCCATACTGTAGCATCAACAACGACCCATATTCATATCAACG ACGACCCTTGCCACATGGCCCGGAACTCCTCACACCAATCGAGAGCAGTG TGTCGCCTTGCGTGAATTGTGCCACGAAGTTGTGCACGCTCTAGACTTTG CGATCATTCCCATCAACCGATGCAGCATTACCCAAGGTTTCACTCTTTCC CGACAAGGTTGCGCTGATGCTGCTGTCGCTGTTGCTGCTGCTGCTGCTGC TGCTGCTGCTGCTGCTGCTGCTGCTCCTTTGCGCGCGCGAGTAGAACCCC GAATGCATCGGGAAGTTCCTGGAGACGGCGGACGTGATCGCGCGAAGACC AAGGGCGGCAGTGGCAGGCGACGGGGACGGGAAGGAGGAGGCTGCACCCC CTGTTACACCCATGATGTTCATCACAAGTGAGTGAAATACGAATCATTCC AATCTATGCGTCCTTGGTGTTCTCGTCGCTCGCCGGTGATTCCCGTTTCG TGCGCCAAACCCTCCGAGAGACACTCTTTCCGTTATTTTTGCCGGTGTTC TTGTTTCAAACGAAAGGTCCGTTGAACCATGCGTACTTGAGGGAGAACAT GGGGCTGCGCAGGACGCCGTACCGGCTGGCGTTCAAGAGCAAGTTCGCCA CTCCCATGTCACTCTACACCAACTACCCGAGCGACGCATTAGGGGGGTGG GCGGAGGACGAAGAGGATTAAGCGTGCGTGATTCTGCGGGTGGGCAATGA ACCAATTGTCGCGGCCTACAGGGGTTGAGTACGTCGTGGGAACGAATTTG AAAACCGGCTTAAGTCCGTTTTGCCCAAAATTCATTCCATGGGTTTGTCG ACAAAATAGGGCAACAGATCTCGTCGCGCTTTGTTGAGTTTCCAACCTCT CACGACATCAGCCTCGTCTAGTACCTAGTCATTTTCCGTGGGCTGGGTTT CGCCGATCACGACAACGTTGGTTGAATCAAGCGCTTGCCGCCATGAAGCC TTAGAATTCATCAAGTTCAGTCGCATCTCAAAGACCCGTGCGGATATCTT GTGTGTAGAGTTATCTTGGTTTTGGCCACTTCGCCGGATGCGCAGATGGT TGAGTATTCACTGCGTTCTTGAGTGGCCATAGCCCGCGGGTTATGTGAGC TCGTGGAAGAGTGGAAGGTAGCGGAGGGACAAGCAATTTTGGGACCTCCG TAGTGAGCTTGGCCTCCCTCACAACGTATCTTTTGACGACGCTGATGTTC GCCCGGGGCTTATGGAGCTGGCTAATACCGGTGGAGGGCAGACCCAAACG GAAGGTGCTGTAGGAAGAACGACGTATGAGGGCATTCTCGTAGAAGCGTT GGAGGACGTCTACGCCGACACGAAGAAGTGGGGTCTCCCTTCTCTGTATC TTGTAGGTCGCATCGTCGCATGACGGTAGCGTCCATTGATTCCGTCGAAA AACACCTGTATTTGTAGAGTTGCATGACCTTCTCCCGGAGGTATAATGTG TTCCCAAGGTCTTTCCATCTACGCAAGGCTGAGAAGCAACCACCAGTGTC ATACAGAAGCAGTCCTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1879:11139..15405+

>mRNA_Ecto-sp13_S_contig1879.5921.1 ID=mRNA_Ecto-sp13_S_contig1879.5921.1|Name=mRNA_Ecto-sp13_S_contig1879.5921.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=780bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1879:11139..15405+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTCGCTCCCGGTCGTCAAGCACTTCCAGCGATGGCGAGTCTCCTGA
GATCACACTCGATGCGTTGTCGGCTGATACTTTGGCGGCGCTCAATGCGC
ACCTTGCAGTGAAGGGCGCGGCTGAGGGCGAGGAGGCGGATTCCGAAGGA
GCGAAGGGCACGTTGGTGACCGAGGACTTCGGCCTGTCTCAGTTTTGGTA
CGACGATGACACTCAGCGAGCGATGGCCGGAGAGGTCCTGAGAGAGGCCC
GGGGCGGAAAGGCCGCGATAATTAGCGCCCCTTCCGTGATGAACGGCATC
AAGTTGTTAAAGTCCGACGGCTGGACCTGTGGTGCGGGGGGCGGGGCGAC
GGTGTACATCTTCGAGTACGATCGACGCTTCGACCAGGCGTATCCAGAGT
CCTTCGTGTACTACGATTTTAACGAACCTTTGGCGGTACCCGACGATCTG
CGAGGGTCTGTCGACTACATTCTCATGGACCCGCCATACTTGAACCCCGA
ATGCATCGGGAAGTTCCTGGAGACGGCGGACGTGATCGCGCGAAGACCAA
GGGCGGCAGTGGCAGGCGACGGGGACGGGAAGGAGGAGGCTGCACCCCCT
GTTACACCCATGATGTTCATCACAAGTCCGTTGAACCATGCGTACTTGAG
GGAGAACATGGGGCTGCGCAGGACGCCGTACCGGCTGGCGTTCAAGAGCA
AGTTCGCCACTCCCATGTCACTCTACACCAACTACCCGAGCGACGCATTA
GGGGGGTGGGCGGAGGACGAAGAGGATTAA
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