mRNA_Ecto-sp13_S_contig18789.5918.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig18789.5918.1 vs. uniprot
Match: A0A6H5KKF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKF4_9PHAE) HSP 1 Score: 74.3 bits (181), Expect = 7.300e-12 Identity = 39/47 (82.98%), Postives = 42/47 (89.36%), Query Frame = 1
Query: 1 DKASSTVVETLLAAGADVSIRDKFRSSALDSASLCGHAPTIHALVRH 141
DKA STV ETLLAAGAD+SIR+ FR+SALDSASL GH PTIHALVRH
Sbjct: 196 DKAHSTVDETLLAAGADLSIRNNFRASALDSASLHGHVPTIHALVRH 242
BLAST of mRNA_Ecto-sp13_S_contig18789.5918.1 vs. uniprot
Match: A0A6H5K513_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K513_9PHAE) HSP 1 Score: 75.5 bits (184), Expect = 9.610e-12 Identity = 51/126 (40.48%), Postives = 66/126 (52.38%), Query Frame = 3
Query: 465 VDNEGRTPAERLNDVPGDRSCSQEDFDRAQLLLARAPADRAWRRCGWLVMLRARASTARIANCDSCRKVARREGEPSVARGGREQAGSGVDDVEPESPAGRRAVRGAVGWLVGMQPEGVFRSVLSF 842
VD TP +RL +V + + DRA LLARAPADRAWRR GWLVML R R D RK + V G E+ G G + A + +RG V LVG++ EGVFR+++ +
Sbjct: 373 VDENDETPVDRLTEVAREVVWEWPELDRALELLARAPADRAWRRRGWLVMLHERTKKERHVRGDRPRKGEKVGSGEEVLLGDGER-GRGKNARRRGGAAVKADLRGVVNVLVGLESEGVFRTIVGY 497
BLAST of mRNA_Ecto-sp13_S_contig18789.5918.1 vs. uniprot
Match: D8LRZ8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRZ8_ECTSI) HSP 1 Score: 75.1 bits (183), Expect = 1.200e-11 Identity = 62/154 (40.26%), Postives = 77/154 (50.00%), Query Frame = 3
Query: 435 LAQVGRG*NPVDNEGRTPAERL--NDVPGDRSCSQEDFDRAQLLLARAPADRAWRRCGWLVMLRARASTARIANC----------------DSCRKVARREGEPSVARGGREQAGSGVDDVEPESPAGRRAVRGAVGWLVGMQPEGVFRSVLSF 842
L Q G V N+G TPA+ L N+ +CS + R +LLLARAPA+RAWRR WLVMLR+ A TAR D K ARRE S G R + +G +V E G + V +VG+ PE VFRS+LSF
Sbjct: 302 LLQWGADETAVHNDGNTPADWLVENNNENGTTCSTAEIGRVRLLLARAPANRAWRRRCWLVMLRSCAKTARATTDKTGDADEGSNDVGDRKDGKCKGARRENGESAGGGVRSRM-NGAGEVGVEG--GASGLASIVASVVGLGPEEVFRSILSF 452
BLAST of mRNA_Ecto-sp13_S_contig18789.5918.1 vs. uniprot
Match: A0A6H5JRY1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRY1_9PHAE) HSP 1 Score: 68.6 bits (166), Expect = 1.830e-9 Identity = 55/145 (37.93%), Postives = 79/145 (54.48%), Query Frame = 3
Query: 465 VDNEGRTPAERLN--DVPGDRS-CSQEDFDRAQLLLARAPADRAWRRCGWLVMLRARASTARIA-----NCDSCRKV-----------ARREGEPSVARGGREQAGSGVDDVEPESPAGRRAVRGAVGWLVGMQPEGVFRSVLSF 842
+DN+ +TPA+ L+ D DR+ CS+ + ++ +LL+ARAPA+RAWRR WLVMLR+ A TAR + D K ARRE S A G +G +V + G + V +VG++PE VFRS++ F
Sbjct: 289 LDNDSKTPADLLDEDDNENDRTTCSEAEIEQVRLLMARAPANRAWRRRCWLVMLRSYAKTARATTEATGDADEGSKXXXXXXXXXXXXARRENGES-AGGWLRSRMNGAGEVGVD--IGAAGLASIVNSVVGLEPEEVFRSIVGF 430
BLAST of mRNA_Ecto-sp13_S_contig18789.5918.1 vs. uniprot
Match: A0A6H5KQA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQA1_9PHAE) HSP 1 Score: 63.5 bits (153), Expect = 3.960e-9 Identity = 49/126 (38.89%), Postives = 63/126 (50.00%), Query Frame = 3
Query: 468 DNEGRTPAERLNDVPGDRS-CSQEDFDRAQLLLARAPADRAWRRCGWLVMLRARASTARIANCDSCRKVARREGEPSVARGGREQAGSGVDDVEPESPAGRRAVRGAVGWLVGMQPEGVFRSVLSF 842
+ GRTP + + D CS ++ DRA LLL RAPADR WRR GWLV+LR+R I C + A G S+ +G G+ D E S G V ++PE VFRS+L F
Sbjct: 8 NKRGRTPLDVVGATRTDNPHCSPDEVDRAWLLLVRAPADRRWRRQGWLVVLRSRT----IVVAHRCARGASDSGL-SLCQGRSNGKGARKDVAESSS--------GVVELPTELEPEAVFRSILRF 120
BLAST of mRNA_Ecto-sp13_S_contig18789.5918.1 vs. uniprot
Match: D8LRS0_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRS0_ECTSI) HSP 1 Score: 67.4 bits (163), Expect = 4.640e-9 Identity = 58/148 (39.19%), Postives = 78/148 (52.70%), Query Frame = 3
Query: 480 RTPAERLNDVPGDR---SCSQEDFDRAQLLLARAPADRAWRRCGWLVMLRARASTARIANCDSC------------RKV-----ARREGEPSVARGGREQA-GSGVDDVEPESPAGRRAVRGAVGW------LVGMQPEGVFRSVLSF 842
+TP + L++ + +CS+ +F+R +LLLARAPA+RAWR WLVMLR+ A TAR AN D+ RKV ARRE S G R + G+G VE R A GW ++G+ PE VFRS++ F
Sbjct: 315 QTPVDMLDEHDDENDGTTCSEAEFERVRLLLARAPANRAWRHRCWLVMLRSCAKTAR-ANSDATGDADEDSNDARDRKVGKCKGARRENGESAGGGVRSRMNGAGEGGVE----------RRAGGWASVVASVIGLGPEEVFRSIVGF 451
BLAST of mRNA_Ecto-sp13_S_contig18789.5918.1 vs. uniprot
Match: D8LQN0_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQN0_ECTSI) HSP 1 Score: 63.2 bits (152), Expect = 1.290e-7 Identity = 52/132 (39.39%), Postives = 73/132 (55.30%), Query Frame = 3
Query: 468 DNEGRTPAERL-----NDVPGDRSCSQEDFDRAQLLLARAPADRAWRRCGWLVMLRARASTARIAN-CDSCRKVARREGEPS-VARGGREQAGSGVDDVEPESPAGRRAVRGAVGWLVGMQPEGVFRSVLSF 842
+N+G TPA+ + ND+ + + D R +LARAPADR+WRR GWLV+ R+ + IAN S ++R G + VAR + GS DD E E +R VG LVG++ EG+FR V+ F
Sbjct: 384 NNDGDTPADVVGVLEQNDLDDEER--EADNQRIHRMLARAPADRSWRRRGWLVLSRSCPTRVHIANGSSSSSSISRINGNSAKVARVSGQ--GSSRDDEETEDQM-MVDLRDLVGRLVGLEAEGLFRLVVGF 510
BLAST of mRNA_Ecto-sp13_S_contig18789.5918.1 vs. uniprot
Match: D8LNI8_ECTSI (EsV-1-8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNI8_ECTSI) HSP 1 Score: 60.8 bits (146), Expect = 2.360e-7 Identity = 34/65 (52.31%), Postives = 42/65 (64.62%), Query Frame = 3
Query: 477 GRTPAE----RLNDVPGDRSCSQEDFDRAQLLLARAPADRAWRRCGWLVMLRARASTARIANCDS 659
G +PA+ R V G Q++ DR +LLL+RAPADRAWRR GWLVMLR+R S A+ C S
Sbjct: 54 GASPADFLGGRYGKVIGHNPAPQDEIDRTRLLLSRAPADRAWRRRGWLVMLRSRDSKAQEGKCRS 118
BLAST of mRNA_Ecto-sp13_S_contig18789.5918.1 vs. uniprot
Match: D7FKZ6_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKZ6_ECTSI) HSP 1 Score: 61.2 bits (147), Expect = 5.910e-7 Identity = 45/112 (40.18%), Postives = 56/112 (50.00%), Query Frame = 3
Query: 507 VPGDRSCSQEDFDRAQLLLARAPADRAWRRCGWLVMLRARASTARIANCDSCRKVARREGEPSVARGGREQAGSGVDDVEPESPAGRRAVRGAVGWLVGMQPEGVFRSVLSF 842
P D S+ +LLLARAPADRAWRR GWLVMLR+R R A D R +++ GS + E S G + AV L G+ EGVFR+V+ F
Sbjct: 460 TPVDLIESEPSLGPLRLLLARAPADRAWRRRGWLVMLRSRTLEVRAAGGDXXXXXXXXXXXXXXXRSVKQRGGSDEETNEVGSEKGSFDLSAAVAQL-GLIEEGVFRNVVCF 570
BLAST of mRNA_Ecto-sp13_S_contig18789.5918.1 vs. uniprot
Match: D7FSI6_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSI6_ECTSI) HSP 1 Score: 60.1 bits (144), Expect = 1.130e-6 Identity = 34/61 (55.74%), Postives = 41/61 (67.21%), Query Frame = 3
Query: 465 VDNEGRTPAERLNDVPGDRSCSQEDFDRAQLLLARAPADRAWRRCGWLVMLRARASTARIA 647
V+ G TPAE + R + E+ A +LLARAPADRAWRR GW+VMLRAR+ T RIA
Sbjct: 304 VNKHGNTPAEVFQRLAIHRPDATEERAGALVLLARAPADRAWRRRGWVVMLRARSETERIA 364 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18789.5918.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig18789.5918.1 >prot_Ecto-sp13_S_contig18789.5918.1 ID=prot_Ecto-sp13_S_contig18789.5918.1|Name=mRNA_Ecto-sp13_S_contig18789.5918.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=281bp DKASSTVVETLLAAGADVSIRDKFRSSALDSASLCGHAPTIHALVRHGVGback to top mRNA from alignment at Ecto-sp13_S_contig18789:2494..3392- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig18789.5918.1 ID=mRNA_Ecto-sp13_S_contig18789.5918.1|Name=mRNA_Ecto-sp13_S_contig18789.5918.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=899bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18789:2494..3392- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18789:2494..3392- >mRNA_Ecto-sp13_S_contig18789.5918.1 ID=mRNA_Ecto-sp13_S_contig18789.5918.1|Name=mRNA_Ecto-sp13_S_contig18789.5918.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=843bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18789:2494..3392- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |