mRNA_Ecto-sp13_S_contig18789.5918.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18789.5918.1
Unique NamemRNA_Ecto-sp13_S_contig18789.5918.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig18789.5918.1 vs. uniprot
Match: A0A6H5KKF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKF4_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 7.300e-12
Identity = 39/47 (82.98%), Postives = 42/47 (89.36%), Query Frame = 1
Query:    1 DKASSTVVETLLAAGADVSIRDKFRSSALDSASLCGHAPTIHALVRH 141
            DKA STV ETLLAAGAD+SIR+ FR+SALDSASL GH PTIHALVRH
Sbjct:  196 DKAHSTVDETLLAAGADLSIRNNFRASALDSASLHGHVPTIHALVRH 242          
BLAST of mRNA_Ecto-sp13_S_contig18789.5918.1 vs. uniprot
Match: A0A6H5K513_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K513_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 9.610e-12
Identity = 51/126 (40.48%), Postives = 66/126 (52.38%), Query Frame = 3
Query:  465 VDNEGRTPAERLNDVPGDRSCSQEDFDRAQLLLARAPADRAWRRCGWLVMLRARASTARIANCDSCRKVARREGEPSVARGGREQAGSGVDDVEPESPAGRRAVRGAVGWLVGMQPEGVFRSVLSF 842
            VD    TP +RL +V  +      + DRA  LLARAPADRAWRR GWLVML  R    R    D  RK  +      V  G  E+ G G +       A +  +RG V  LVG++ EGVFR+++ +
Sbjct:  373 VDENDETPVDRLTEVAREVVWEWPELDRALELLARAPADRAWRRRGWLVMLHERTKKERHVRGDRPRKGEKVGSGEEVLLGDGER-GRGKNARRRGGAAVKADLRGVVNVLVGLESEGVFRTIVGY 497          
BLAST of mRNA_Ecto-sp13_S_contig18789.5918.1 vs. uniprot
Match: D8LRZ8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRZ8_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 1.200e-11
Identity = 62/154 (40.26%), Postives = 77/154 (50.00%), Query Frame = 3
Query:  435 LAQVGRG*NPVDNEGRTPAERL--NDVPGDRSCSQEDFDRAQLLLARAPADRAWRRCGWLVMLRARASTARIANC----------------DSCRKVARREGEPSVARGGREQAGSGVDDVEPESPAGRRAVRGAVGWLVGMQPEGVFRSVLSF 842
            L Q G     V N+G TPA+ L  N+     +CS  +  R +LLLARAPA+RAWRR  WLVMLR+ A TAR                    D   K ARRE   S   G R +  +G  +V  E   G   +   V  +VG+ PE VFRS+LSF
Sbjct:  302 LLQWGADETAVHNDGNTPADWLVENNNENGTTCSTAEIGRVRLLLARAPANRAWRRRCWLVMLRSCAKTARATTDKTGDADEGSNDVGDRKDGKCKGARRENGESAGGGVRSRM-NGAGEVGVEG--GASGLASIVASVVGLGPEEVFRSILSF 452          
BLAST of mRNA_Ecto-sp13_S_contig18789.5918.1 vs. uniprot
Match: A0A6H5JRY1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRY1_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 1.830e-9
Identity = 55/145 (37.93%), Postives = 79/145 (54.48%), Query Frame = 3
Query:  465 VDNEGRTPAERLN--DVPGDRS-CSQEDFDRAQLLLARAPADRAWRRCGWLVMLRARASTARIA-----NCDSCRKV-----------ARREGEPSVARGGREQAGSGVDDVEPESPAGRRAVRGAVGWLVGMQPEGVFRSVLSF 842
            +DN+ +TPA+ L+  D   DR+ CS+ + ++ +LL+ARAPA+RAWRR  WLVMLR+ A TAR       + D   K            ARRE   S A G      +G  +V  +   G   +   V  +VG++PE VFRS++ F
Sbjct:  289 LDNDSKTPADLLDEDDNENDRTTCSEAEIEQVRLLMARAPANRAWRRRCWLVMLRSYAKTARATTEATGDADEGSKXXXXXXXXXXXXARRENGES-AGGWLRSRMNGAGEVGVD--IGAAGLASIVNSVVGLEPEEVFRSIVGF 430          
BLAST of mRNA_Ecto-sp13_S_contig18789.5918.1 vs. uniprot
Match: A0A6H5KQA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQA1_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 3.960e-9
Identity = 49/126 (38.89%), Postives = 63/126 (50.00%), Query Frame = 3
Query:  468 DNEGRTPAERLNDVPGDRS-CSQEDFDRAQLLLARAPADRAWRRCGWLVMLRARASTARIANCDSCRKVARREGEPSVARGGREQAGSGVDDVEPESPAGRRAVRGAVGWLVGMQPEGVFRSVLSF 842
            +  GRTP + +     D   CS ++ DRA LLL RAPADR WRR GWLV+LR+R     I     C + A   G  S+ +G     G+  D  E  S        G V     ++PE VFRS+L F
Sbjct:    8 NKRGRTPLDVVGATRTDNPHCSPDEVDRAWLLLVRAPADRRWRRQGWLVVLRSRT----IVVAHRCARGASDSGL-SLCQGRSNGKGARKDVAESSS--------GVVELPTELEPEAVFRSILRF 120          
BLAST of mRNA_Ecto-sp13_S_contig18789.5918.1 vs. uniprot
Match: D8LRS0_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRS0_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 4.640e-9
Identity = 58/148 (39.19%), Postives = 78/148 (52.70%), Query Frame = 3
Query:  480 RTPAERLNDVPGDR---SCSQEDFDRAQLLLARAPADRAWRRCGWLVMLRARASTARIANCDSC------------RKV-----ARREGEPSVARGGREQA-GSGVDDVEPESPAGRRAVRGAVGW------LVGMQPEGVFRSVLSF 842
            +TP + L++   +    +CS+ +F+R +LLLARAPA+RAWR   WLVMLR+ A TAR AN D+             RKV     ARRE   S   G R +  G+G   VE          R A GW      ++G+ PE VFRS++ F
Sbjct:  315 QTPVDMLDEHDDENDGTTCSEAEFERVRLLLARAPANRAWRHRCWLVMLRSCAKTAR-ANSDATGDADEDSNDARDRKVGKCKGARRENGESAGGGVRSRMNGAGEGGVE----------RRAGGWASVVASVIGLGPEEVFRSIVGF 451          
BLAST of mRNA_Ecto-sp13_S_contig18789.5918.1 vs. uniprot
Match: D8LQN0_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQN0_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 1.290e-7
Identity = 52/132 (39.39%), Postives = 73/132 (55.30%), Query Frame = 3
Query:  468 DNEGRTPAERL-----NDVPGDRSCSQEDFDRAQLLLARAPADRAWRRCGWLVMLRARASTARIAN-CDSCRKVARREGEPS-VARGGREQAGSGVDDVEPESPAGRRAVRGAVGWLVGMQPEGVFRSVLSF 842
            +N+G TPA+ +     ND+  +    + D  R   +LARAPADR+WRR GWLV+ R+  +   IAN   S   ++R  G  + VAR   +  GS  DD E E       +R  VG LVG++ EG+FR V+ F
Sbjct:  384 NNDGDTPADVVGVLEQNDLDDEER--EADNQRIHRMLARAPADRSWRRRGWLVLSRSCPTRVHIANGSSSSSSISRINGNSAKVARVSGQ--GSSRDDEETEDQM-MVDLRDLVGRLVGLEAEGLFRLVVGF 510          
BLAST of mRNA_Ecto-sp13_S_contig18789.5918.1 vs. uniprot
Match: D8LNI8_ECTSI (EsV-1-8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNI8_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 2.360e-7
Identity = 34/65 (52.31%), Postives = 42/65 (64.62%), Query Frame = 3
Query:  477 GRTPAE----RLNDVPGDRSCSQEDFDRAQLLLARAPADRAWRRCGWLVMLRARASTARIANCDS 659
            G +PA+    R   V G     Q++ DR +LLL+RAPADRAWRR GWLVMLR+R S A+   C S
Sbjct:   54 GASPADFLGGRYGKVIGHNPAPQDEIDRTRLLLSRAPADRAWRRRGWLVMLRSRDSKAQEGKCRS 118          
BLAST of mRNA_Ecto-sp13_S_contig18789.5918.1 vs. uniprot
Match: D7FKZ6_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKZ6_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 5.910e-7
Identity = 45/112 (40.18%), Postives = 56/112 (50.00%), Query Frame = 3
Query:  507 VPGDRSCSQEDFDRAQLLLARAPADRAWRRCGWLVMLRARASTARIANCDSCRKVARREGEPSVARGGREQAGSGVDDVEPESPAGRRAVRGAVGWLVGMQPEGVFRSVLSF 842
             P D   S+      +LLLARAPADRAWRR GWLVMLR+R    R A  D               R  +++ GS  +  E  S  G   +  AV  L G+  EGVFR+V+ F
Sbjct:  460 TPVDLIESEPSLGPLRLLLARAPADRAWRRRGWLVMLRSRTLEVRAAGGDXXXXXXXXXXXXXXXRSVKQRGGSDEETNEVGSEKGSFDLSAAVAQL-GLIEEGVFRNVVCF 570          
BLAST of mRNA_Ecto-sp13_S_contig18789.5918.1 vs. uniprot
Match: D7FSI6_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSI6_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 1.130e-6
Identity = 34/61 (55.74%), Postives = 41/61 (67.21%), Query Frame = 3
Query:  465 VDNEGRTPAERLNDVPGDRSCSQEDFDRAQLLLARAPADRAWRRCGWLVMLRARASTARIA 647
            V+  G TPAE    +   R  + E+   A +LLARAPADRAWRR GW+VMLRAR+ T RIA
Sbjct:  304 VNKHGNTPAEVFQRLAIHRPDATEERAGALVLLARAPADRAWRRRGWVVMLRARSETERIA 364          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18789.5918.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A6H5KKF4_9PHAE7.300e-1282.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K513_9PHAE9.610e-1240.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRZ8_ECTSI1.200e-1140.26Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5JRY1_9PHAE1.830e-937.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQA1_9PHAE3.960e-938.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRS0_ECTSI4.640e-939.19Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D8LQN0_ECTSI1.290e-739.39Ankyrin repeat protein n=2 Tax=Ectocarpus siliculo... [more]
D8LNI8_ECTSI2.360e-752.31EsV-1-8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7FKZ6_ECTSI5.910e-740.18Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
D7FSI6_ECTSI1.130e-655.74Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18789contigEcto-sp13_S_contig18789:2494..3392 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size845
Hectar predicted targeting categoryother localisation
Exons2
Cds size843
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462961.0703819-CDS-Ecto-sp13_S_contig18789:2495..26781681462961.0703819-CDS-Ecto-sp13_S_contig18789:2495..2678Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18789 2496..2678 -
1681462961.0877233-CDS-Ecto-sp13_S_contig18789:2732..33921681462961.0877233-CDS-Ecto-sp13_S_contig18789:2732..3392Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18789 2733..3392 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18789.5918.1prot_Ecto-sp13_S_contig18789.5918.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18789 2496..3392 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18789.5918.1

>prot_Ecto-sp13_S_contig18789.5918.1 ID=prot_Ecto-sp13_S_contig18789.5918.1|Name=mRNA_Ecto-sp13_S_contig18789.5918.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=281bp
DKASSTVVETLLAAGADVSIRDKFRSSALDSASLCGHAPTIHALVRHGVG
VTSCDDRGDTALHKAALQDQAASVDALIEAGAGMEMKRTGGATPVWIAAF
FCSPKTLLALFLKGAITNAPDNRGKTPLHVACLPRGGDLAAVVDLLLRWG
ADETPWTTRAALRRKDSTTCPVTVRAPKKTSTGRSCCWPGLPPTGRGVAA
AGWSCSVHALRRRGSQTATAAVRWRGGKENQVLRVVDASRQAAGLMTSNP
RVRLAEGPCGVRWAGWWACSLRECFGRSSAF
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mRNA from alignment at Ecto-sp13_S_contig18789:2494..3392-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18789.5918.1 ID=mRNA_Ecto-sp13_S_contig18789.5918.1|Name=mRNA_Ecto-sp13_S_contig18789.5918.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=899bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18789:2494..3392- (Ectocarpus species13 EcNAP12_S_4_19m)
GACAAGGCTAGCTCGACTGTCGTGGAGACTCTTTTGGCCGCTGGTGCTGA CGTGAGCATCCGAGATAAATTTCGATCTTCGGCCCTGGACTCGGCTTCTT TATGTGGGCACGCTCCCACAATACACGCTCTTGTTCGGCATGGGGTGGGC GTCACTTCTTGTGATGACCGCGGCGACACCGCTCTGCACAAGGCTGCTCT CCAAGATCAGGCGGCTTCGGTCGACGCCCTGATCGAAGCGGGGGCGGGTA TGGAGATGAAAAGAACGGGGGGAGCCACGCCTGTTTGGATCGCTGCATTT TTCTGCTCTCCCAAAACCTTGCTCGCTCTCTTCCTTAAAGGGGCAATCAC CAACGCGCCAGACAACAGGGGAAAGACGCCTTTGCACGTAGCTTGCCTTC CTCGAGGCGGAGACCTGGCAGCAGTCGTAGACCTCTTGCTCAGGTGGGGC GCGGATGAAACCCCGTGGACAACGAGGGCCGCACTCCGGCGGAAAGACTC AACGACGTGCCCGGTGACCGTTCGTGCTCCCAAGAAGACTTCGACCGGGC GCAGCTGCTGCTGGCCCGGGCTCCCGCCGACAGGGCGTGGCGTCGCTGCG GCTGGCTGGTCATGCTCCGTGCACGCGCTTCGACGGCGAGGATCGCAAAC TGCGACAGCTGTGGCGATACCCGCGTCGAGAGTTCCGGTGCGGCTGCCAG CGTAATAGGCGAAGGCCGTAAGGTGGCGAGGAGGGAAGGAGAACCAAGTG TTGCGCGTGGTGGACGCGAGCAGGCAGGCAGCGGGGTTGATGACGTCGAA CCCGAGAGTCCGGCTGGCAGAAGGGCCGTGCGGGGTGCGGTGGGCTGGCT GGTGGGCATGCAGCCTGAGGGAGTGTTTCGGTCGGTCCTCAGCTTTCTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18789:2494..3392-

>mRNA_Ecto-sp13_S_contig18789.5918.1 ID=mRNA_Ecto-sp13_S_contig18789.5918.1|Name=mRNA_Ecto-sp13_S_contig18789.5918.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=843bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18789:2494..3392- (Ectocarpus species13 EcNAP12_S_4_19m)
GACAAGGCTAGCTCGACTGTCGTGGAGACTCTTTTGGCCGCTGGTGCTGA
CGTGAGCATCCGAGATAAATTTCGATCTTCGGCCCTGGACTCGGCTTCTT
TATGTGGGCACGCTCCCACAATACACGCTCTTGTTCGGCATGGGGTGGGC
GTCACTTCTTGTGATGACCGCGGCGACACCGCTCTGCACAAGGCTGCTCT
CCAAGATCAGGCGGCTTCGGTCGACGCCCTGATCGAAGCGGGGGCGGGTA
TGGAGATGAAAAGAACGGGGGGAGCCACGCCTGTTTGGATCGCTGCATTT
TTCTGCTCTCCCAAAACCTTGCTCGCTCTCTTCCTTAAAGGGGCAATCAC
CAACGCGCCAGACAACAGGGGAAAGACGCCTTTGCACGTAGCTTGCCTTC
CTCGAGGCGGAGACCTGGCAGCAGTCGTAGACCTCTTGCTCAGGTGGGGC
GCGGATGAAACCCCGTGGACAACGAGGGCCGCACTCCGGCGGAAAGACTC
AACGACGTGCCCGGTGACCGTTCGTGCTCCCAAGAAGACTTCGACCGGGC
GCAGCTGCTGCTGGCCCGGGCTCCCGCCGACAGGGCGTGGCGTCGCTGCG
GCTGGCTGGTCATGCTCCGTGCACGCGCTTCGACGGCGAGGATCGCAAAC
TGCGACAGCTGCCGTAAGGTGGCGAGGAGGGAAGGAGAACCAAGTGTTGC
GCGTGGTGGACGCGAGCAGGCAGGCAGCGGGGTTGATGACGTCGAACCCG
AGAGTCCGGCTGGCAGAAGGGCCGTGCGGGGTGCGGTGGGCTGGCTGGTG
GGCATGCAGCCTGAGGGAGTGTTTCGGTCGGTCCTCAGCTTTC
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