mRNA_Ecto-sp13_S_contig18787.5917.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18787.5917.1
Unique NamemRNA_Ecto-sp13_S_contig18787.5917.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig18787.5917.1 vs. uniprot
Match: D7FQE9_ECTSI (Phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQE9_ECTSI)

HSP 1 Score: 249 bits (637), Expect = 1.150e-77
Identity = 126/129 (97.67%), Postives = 127/129 (98.45%), Query Frame = 1
Query:    1 RCDPREDFGGSHPDPNLAYASDLVRRMGLDSSGQPLQGAAANAAEPPTLGAAADGDADRNMILGRRFFVTPSDSLAVIAANAAAVPYFARAGGLGGAARSMPTSGALDRVCERQGVPMFETPTGWKFFG 387
            RCDPREDFGGSHPDPNLAYAS LVRRMGLDSS QPLQGAAA+AAEPPTLGAAADGDADRNMILGRRFFVTPSDSLAVIAANAAAVPYFARAGGLGGAARSMPTSGALDRVCERQGVPMFETPTGWKFFG
Sbjct:  273 RCDPREDFGGSHPDPNLAYASGLVRRMGLDSSAQPLQGAAADAAEPPTLGAAADGDADRNMILGRRFFVTPSDSLAVIAANAAAVPYFARAGGLGGAARSMPTSGALDRVCERQGVPMFETPTGWKFFG 401          
BLAST of mRNA_Ecto-sp13_S_contig18787.5917.1 vs. uniprot
Match: S9W0P8_9TRYP (Uncharacterized protein (Fragment) n=1 Tax=Strigomonas culicis TaxID=28005 RepID=S9W0P8_9TRYP)

HSP 1 Score: 164 bits (414), Expect = 8.130e-49
Identity = 86/129 (66.67%), Postives = 97/129 (75.19%), Query Frame = 1
Query:    1 RCDPREDFGGSHPDPNLAYASDLVRRMGLDSSGQPLQGAAANAAEPPTLGAAADGDADRNMILGRRFFVTPSDSLAVIAANAAAVPYFARAGGLGGAARSMPTSGALDRVCERQGVPMFETPTGWKFFG 387
            R DP  DFGG HPDPNL YA+DLVR MGL   G     AAA  AE P+ GAA DGDADRNM++G RFFV PSD+LAV+AANA AVP+F RAGGL   ARSMPTSGA+DRV   +G+  FE PTGWK+FG
Sbjct:   51 RTDPLPDFGGCHPDPNLTYAADLVRAMGLGPDGSAC--AAALGAEVPSFGAAFDGDADRNMVVGARFFVNPSDALAVLAANADAVPFFRRAGGLRAVARSMPTSGAVDRVAAAKGLRCFEVPTGWKYFG 177          
BLAST of mRNA_Ecto-sp13_S_contig18787.5917.1 vs. uniprot
Match: A0A835Z552_9STRA (Phosphoglucomutase, cytoplasmic n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z552_9STRA)

HSP 1 Score: 172 bits (436), Expect = 1.760e-48
Identity = 93/129 (72.09%), Postives = 99/129 (76.74%), Query Frame = 1
Query:    1 RCDPREDFGGSHPDPNLAYASDLVRRMGLDSSGQPLQGAAANAAEPPTLGAAADGDADRNMILGRRFFVTPSDSLAVIAANAAAVPYFARAGGLGGAARSMPTSGALDRVCERQGVPMFETPTGWKFFG 387
            RC+P EDFGG HPDPNL YA DLV RMGL + G  L  AA  AAEPP  GAAADGD DRNM+LGRRFFVTPSDSLAVIAANA A+P+F    GL  AARSMPTS ALDRV    G  +FETPTGWKFFG
Sbjct:  234 RCEPLEDFGGGHPDPNLTYADDLVARMGLAADGSVLP-AAEGAAEPPVFGAAADGDGDRNMVLGRRFFVTPSDSLAVIAANAQAIPHFKD--GLKAAARSMPTSAALDRVGAALGFRVFETPTGWKFFG 359          
BLAST of mRNA_Ecto-sp13_S_contig18787.5917.1 vs. uniprot
Match: A0A7S1MRQ0_NEODS (Phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) (Fragment) n=1 Tax=Neobodo designis TaxID=312471 RepID=A0A7S1MRQ0_NEODS)

HSP 1 Score: 167 bits (424), Expect = 1.010e-46
Identity = 86/135 (63.70%), Postives = 101/135 (74.81%), Query Frame = 1
Query:    4 CDPREDFGGSHPDPNLAYASDLVRRMGLDSSGQPLQGA-------AANAAEPPTLGAAADGDADRNMILGRRFFVTPSDSLAVIAANAAAVPYFARAGGLGGAARSMPTSGALDRVCERQGVPMFETPTGWKFFG 387
             +P  DFGG HPDPNL YA+DLV  MGL++ G+P  GA       A+ AA PPT GAA DGDADRNMILG   +V+PSDS+A+IAANA A+PYF  AGG+   ARSMPTSGALD V ++ GVP+FE PTGWKFFG
Sbjct:  266 AEPLPDFGGGHPDPNLTYAADLVEAMGLNADGKPWAGAKLLAGKAASKAAAPPTFGAACDGDADRNMILGASCYVSPSDSVAIIAANADAIPYFRAAGGVKALARSMPTSGALDLVAKQMGVPIFEVPTGWKFFG 400          
BLAST of mRNA_Ecto-sp13_S_contig18787.5917.1 vs. uniprot
Match: S9VKW8_9TRYP (Phosphoglucomutase n=1 Tax=Strigomonas culicis TaxID=28005 RepID=S9VKW8_9TRYP)

HSP 1 Score: 164 bits (414), Expect = 1.120e-46
Identity = 86/129 (66.67%), Postives = 97/129 (75.19%), Query Frame = 1
Query:    1 RCDPREDFGGSHPDPNLAYASDLVRRMGLDSSGQPLQGAAANAAEPPTLGAAADGDADRNMILGRRFFVTPSDSLAVIAANAAAVPYFARAGGLGGAARSMPTSGALDRVCERQGVPMFETPTGWKFFG 387
            R DP  DFGG HPDPNL YA+DLVR MGL   G     AAA  AE P+ GAA DGDADRNM++G RFFV PSD+LAV+AANA AVP+F RAGGL   ARSMPTSGA+DRV   +G+  FE PTGWK+FG
Sbjct:   51 RTDPLPDFGGCHPDPNLTYAADLVRAMGLGPDGSAC--AAALGAEVPSFGAAFDGDADRNMVVGARFFVNPSDALAVLAANADAVPFFRRAGGLRAVARSMPTSGAVDRVAAAKGLRCFEVPTGWKYFG 177          
BLAST of mRNA_Ecto-sp13_S_contig18787.5917.1 vs. uniprot
Match: A0A7S3W6Y8_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3W6Y8_9SPIT)

HSP 1 Score: 164 bits (414), Expect = 2.150e-46
Identity = 85/128 (66.41%), Postives = 99/128 (77.34%), Query Frame = 1
Query:    4 CDPREDFGGSHPDPNLAYASDLVRRMGLDSSGQPLQGAAANAAEPPTLGAAADGDADRNMILGRRFFVTPSDSLAVIAANAAAVPYFARAGGLGGAARSMPTSGALDRVCERQGVPMFETPTGWKFFG 387
            C+P EDF G HPDPNL YA+ L   MGL+  GQ          EPP +GAAADGDADRNMI+GRRFFVTPSDS+AVIAA+A A+P+ +RAGGL   ARSMPTSGALDRV  + G+P+FETPTGWK+FG
Sbjct:  275 CEPSEDFNGGHPDPNLTYAAALATLMGLN--GQTPD-------EPPVIGAAADGDADRNMIVGRRFFVTPSDSVAVIAAHADALPWLSRAGGLKALARSMPTSGALDRVASQLGLPLFETPTGWKYFG 393          
BLAST of mRNA_Ecto-sp13_S_contig18787.5917.1 vs. uniprot
Match: A0A0M0K746_9EUKA (Phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K746_9EUKA)

HSP 1 Score: 167 bits (424), Expect = 3.140e-46
Identity = 86/128 (67.19%), Postives = 99/128 (77.34%), Query Frame = 1
Query:    4 CDPREDFGGSHPDPNLAYASDLVRRMGLDSSGQPLQGAAANAAEPPTLGAAADGDADRNMILGRRFFVTPSDSLAVIAANAAAVPYFARAGGLGGAARSMPTSGALDRVCERQGVPMFETPTGWKFFG 387
            C+P E F G HPDPNL YA +LV  MG+ ++G    GAA +A+  P  GAAADGDADRNMILGR FFVTPSDSLA+IAA+A  +P+FA AGGL   ARSMPTSGA+DRV   QG+P FETPTGWKFFG
Sbjct:  333 CEPSETFNGGHPDPNLVYAHELVATMGVTAAG----GAAPSASSAPVFGAAADGDADRNMILGRGFFVTPSDSLALIAAHAHLIPWFANAGGLKAVARSMPTSGAVDRVAAAQGLPFFETPTGWKFFG 456          
BLAST of mRNA_Ecto-sp13_S_contig18787.5917.1 vs. uniprot
Match: A0A7S0NZK6_9EUKA (Phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NZK6_9EUKA)

HSP 1 Score: 167 bits (422), Expect = 5.500e-46
Identity = 84/128 (65.62%), Postives = 99/128 (77.34%), Query Frame = 1
Query:    4 CDPREDFGGSHPDPNLAYASDLVRRMGLDSSGQPLQGAAANAAEPPTLGAAADGDADRNMILGRRFFVTPSDSLAVIAANAAAVPYFARAGGLGGAARSMPTSGALDRVCERQGVPMFETPTGWKFFG 387
            C+PR+DFGG HPDPNL YAS LV  MGL S G   +      + PP LGAAADGD DRNMILG+RFFVTPSDS+A+IAA+A A+P+ A+ GGL   ARSMPTS ALDRV +  G+P++ETPTGWKFFG
Sbjct:  327 CEPRDDFGGGHPDPNLTYASQLVETMGLLSDGAINE----RTSSPPELGAAADGDGDRNMILGKRFFVTPSDSVAIIAAHAHALPWLAKLGGLRALARSMPTSAALDRVAQALGLPLYETPTGWKFFG 450          
BLAST of mRNA_Ecto-sp13_S_contig18787.5917.1 vs. uniprot
Match: A0A6V1U5R2_HETAK (Phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1U5R2_HETAK)

HSP 1 Score: 168 bits (425), Expect = 8.290e-46
Identity = 85/128 (66.41%), Postives = 97/128 (75.78%), Query Frame = 1
Query:    4 CDPREDFGGSHPDPNLAYASDLVRRMGLDSSGQPLQGAAANAAEPPTLGAAADGDADRNMILGRRFFVTPSDSLAVIAANAAAVPYFARAGGLGGAARSMPTSGALDRVCERQGVPMFETPTGWKFFG 387
             +P EDFGG H DPNL YA +L   MG+DS G P+ G    A EPP  GAAADGDADRNMILGRRFFVTPSDS+A++AA+A  +P+F   GGL G ARSMPTSGAL+RV  R  +P FETPTGWKFFG
Sbjct:  692 AEPLEDFGGGHADPNLTYAHNLTEVMGVDSKGLPVTG---QAREPPQFGAAADGDADRNMILGRRFFVTPSDSVAILAAHADVIPFFRDQGGLKGVARSMPTSGALERVAARLNLPFFETPTGWKFFG 816          
BLAST of mRNA_Ecto-sp13_S_contig18787.5917.1 vs. uniprot
Match: A0A7R9W9M3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W9M3_9STRA)

HSP 1 Score: 156 bits (394), Expect = 2.340e-45
Identity = 84/131 (64.12%), Postives = 95/131 (72.52%), Query Frame = 1
Query:    1 RCDPREDFGGSHPDPNLAYASDLVRRMGL--DSSGQPLQGAAANAAEPPTLGAAADGDADRNMILGRRFFVTPSDSLAVIAANAAAVPYFARAGGLGGAARSMPTSGALDRVCERQGVPMFETPTGWKFFG 387
            RCDPR DFGG HPDPNL YA+ L+++MGL  D S  P    +A+AA  P LGAA DGD DRN+I G  FFVTPSDSLAVI  N  A+P+FA  GG GG ARSMP+S ALD V E + VP F TPTGWKFFG
Sbjct:   52 RCDPRPDFGGCHPDPNLTYAAALIKKMGLSPDGSADP----SADAAALPALGAANDGDGDRNLIAGAGFFVTPSDSLAVICDNWEAIPHFASRGGPGGVARSMPSSAALDVVAEARDVPCFVTPTGWKFFG 178          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18787.5917.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQE9_ECTSI1.150e-7797.67Phosphoglucomutase (alpha-D-glucose-1,6-bisphospha... [more]
S9W0P8_9TRYP8.130e-4966.67Uncharacterized protein (Fragment) n=1 Tax=Strigom... [more]
A0A835Z552_9STRA1.760e-4872.09Phosphoglucomutase, cytoplasmic n=1 Tax=Tribonema ... [more]
A0A7S1MRQ0_NEODS1.010e-4663.70Phosphoglucomutase (alpha-D-glucose-1,6-bisphospha... [more]
S9VKW8_9TRYP1.120e-4666.67Phosphoglucomutase n=1 Tax=Strigomonas culicis Tax... [more]
A0A7S3W6Y8_9SPIT2.150e-4666.41Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A0M0K746_9EUKA3.140e-4667.19Phosphoglucomutase (alpha-D-glucose-1,6-bisphospha... [more]
A0A7S0NZK6_9EUKA5.500e-4665.63Phosphoglucomutase (alpha-D-glucose-1,6-bisphospha... [more]
A0A6V1U5R2_HETAK8.290e-4666.41Phosphoglucomutase (alpha-D-glucose-1,6-bisphospha... [more]
A0A7R9W9M3_9STRA2.340e-4564.12Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18787contigEcto-sp13_S_contig18787:132..518 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score252.3
Seed ortholog evalue1.2e-64
Seed eggNOG ortholog2880.D7FQE9
Model size387
KEGG rclassRC00408
KEGG koko:K01835
KEGG ReactionR00959,R01057,R08639
KEGG Pathwayko00010,ko00030,ko00052,ko00230,ko00500,ko00520,ko00521,ko01100,ko01110,ko01120,ko01130,map00010,map00030,map00052,map00230,map00500,map00520,map00521,map01100,map01110,map01120,map01130
KEGG ModuleM00549
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464
Exons1
EggNOG free text desc.phosphoglucomutase activity
EggNOG OGsCOG0033@1,KOG0625@2759
EC5.4.2.2
Cds size387
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462961.0332835-CDS-Ecto-sp13_S_contig18787:131..5181681462961.0332835-CDS-Ecto-sp13_S_contig18787:131..518Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18787 132..518 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18787.5917.1prot_Ecto-sp13_S_contig18787.5917.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18787 132..518 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18787.5917.1

>prot_Ecto-sp13_S_contig18787.5917.1 ID=prot_Ecto-sp13_S_contig18787.5917.1|Name=mRNA_Ecto-sp13_S_contig18787.5917.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=129bp
RCDPREDFGGSHPDPNLAYASDLVRRMGLDSSGQPLQGAAANAAEPPTLG
AAADGDADRNMILGRRFFVTPSDSLAVIAANAAAVPYFARAGGLGGAARS
MPTSGALDRVCERQGVPMFETPTGWKFFG
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mRNA from alignment at Ecto-sp13_S_contig18787:132..518+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18787.5917.1 ID=mRNA_Ecto-sp13_S_contig18787.5917.1|Name=mRNA_Ecto-sp13_S_contig18787.5917.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=387bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18787:132..518+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTGCGACCCGAGAGAAGACTTCGGCGGCAGCCACCCGGATCCCAACCT CGCATACGCCTCCGACCTGGTGCGAAGGATGGGCCTCGACAGCAGCGGCC AACCCCTCCAAGGAGCAGCAGCAAACGCGGCGGAACCGCCGACGCTTGGG GCCGCGGCCGACGGCGACGCCGATCGAAACATGATCCTAGGAAGGCGTTT CTTCGTGACTCCCAGCGACTCCCTTGCGGTGATCGCGGCTAACGCCGCGG CGGTGCCGTACTTCGCGAGGGCGGGTGGGCTCGGTGGAGCGGCGAGGAGC ATGCCGACGAGCGGCGCGCTGGACAGGGTGTGCGAGAGGCAGGGAGTGCC TATGTTCGAGACACCCACGGGGTGGAAGTTCTTCGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18787:132..518+

>mRNA_Ecto-sp13_S_contig18787.5917.1 ID=mRNA_Ecto-sp13_S_contig18787.5917.1|Name=mRNA_Ecto-sp13_S_contig18787.5917.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=387bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18787:132..518+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTGCGACCCGAGAGAAGACTTCGGCGGCAGCCACCCGGATCCCAACCT
CGCATACGCCTCCGACCTGGTGCGAAGGATGGGCCTCGACAGCAGCGGCC
AACCCCTCCAAGGAGCAGCAGCAAACGCGGCGGAACCGCCGACGCTTGGG
GCCGCGGCCGACGGCGACGCCGATCGAAACATGATCCTAGGAAGGCGTTT
CTTCGTGACTCCCAGCGACTCCCTTGCGGTGATCGCGGCTAACGCCGCGG
CGGTGCCGTACTTCGCGAGGGCGGGTGGGCTCGGTGGAGCGGCGAGGAGC
ATGCCGACGAGCGGCGCGCTGGACAGGGTGTGCGAGAGGCAGGGAGTGCC
TATGTTCGAGACACCCACGGGGTGGAAGTTCTTCGGG
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