mRNA_Ecto-sp13_S_contig18786.5916.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18786.5916.1
Unique NamemRNA_Ecto-sp13_S_contig18786.5916.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18786.5916.1 vs. uniprot
Match: D8LR20_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR20_ECTSI)

HSP 1 Score: 261 bits (666), Expect = 4.540e-82
Identity = 158/161 (98.14%), Postives = 159/161 (98.76%), Query Frame = 3 
Query:  213 MADSGTERAMAPEDMPRLGPTWSRGGGMFKPPKRPEGHVEGEDGVGTXXXXXXXXXXXXRGSTLASSAADPPSRKAPPVFGHAARGGLEALASATTQRGFAPRDGSGGLSGGTAAVETGGVGGVRIAAGPXXXXXXXXGLGPPGRWERERTASIDKRKVCR 695
            MADSGTERAMAPEDMPRLGPTWSRGGGMFKPPKRPEGHVEGE+GVGTXXXXXXXXXXXXRGSTLASSAADPPSRKAPPVFGHAARGGLEALASATTQRGFAPRDGSGGLSGGTAAVETGGVGGVRIAAGPXXXXXXXXGLGPPGRWERER ASIDKRKV R
Sbjct:    1 MADSGTERAMAPEDMPRLGPTWSRGGGMFKPPKRPEGHVEGEEGVGTXXXXXXXXXXXXRGSTLASSAADPPSRKAPPVFGHAARGGLEALASATTQRGFAPRDGSGGLSGGTAAVETGGVGGVRIAAGPXXXXXXXXGLGPPGRWERERAASIDKRKVQR 161
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BLAST of mRNA_Ecto-sp13_S_contig18786.5916.1 vs. uniprot
Match: A0A6H5KUY1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY1_9PHAE)

HSP 1 Score: 237 bits (604), Expect = 3.220e-75
Identity = 143/200 (71.50%), Postives = 146/200 (73.00%), Query Frame = 3 
Query:  213 MADSGTERAMAPEDMPRLGPTWSRGGGMFKPPKRPEGHVEG---------------------------------------EDGVGTXXXXXXXXXXXXRGSTLASSAADPPSRKAPPVFGHAARGGLEALASATTQRGFAPRDGSGGLSGGTAAVETGGVGGVRIAAGPXXXXXXXXGLGPPGRWERERTASIDKRKVCR 695
            MADSGTERAMAPEDMPRLGPTWSRGGGMFKPPKRPEGH+EG                                       E+GVGT            R STLASSAADPPSRKAPPVFGHAARGGLEALASATTQRGFAPRDGSGGLSGGTAAVETGGVGGVRIAAGPXXXXXXXXGLGPPGRW+RER ASIDKRKV R
Sbjct:    1 MADSGTERAMAPEDMPRLGPTWSRGGGMFKPPKRPEGHLEGVGHRTTLGEDWRVLGIGVSLNCWGVFRDKGLLLFAARDQEEGVGTGVPSPGTGAGGGRASTLASSAADPPSRKAPPVFGHAARGGLEALASATTQRGFAPRDGSGGLSGGTAAVETGGVGGVRIAAGPXXXXXXXXGLGPPGRWDRERAASIDKRKVQR 200
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18786.5916.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LR20_ECTSI4.540e-8298.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KUY1_9PHAE3.220e-7571.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18786contigEcto-sp13_S_contig18786:1765..3373 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size695
Hectar predicted targeting categoryother localisation
Exons3
Cds size483
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462960.9592154-UTR-Ecto-sp13_S_contig18786:1764..19761681462960.9592154-UTR-Ecto-sp13_S_contig18786:1764..1976Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18786 1765..1976 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462960.9767287-CDS-Ecto-sp13_S_contig18786:1976..20991681462960.9767287-CDS-Ecto-sp13_S_contig18786:1976..2099Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18786 1977..2099 +
1681462960.9908628-CDS-Ecto-sp13_S_contig18786:2699..28251681462960.9908628-CDS-Ecto-sp13_S_contig18786:2699..2825Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18786 2700..2825 +
1681462961.000856-CDS-Ecto-sp13_S_contig18786:3139..33731681462961.000856-CDS-Ecto-sp13_S_contig18786:3139..3373Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18786 3140..3373 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18786.5916.1prot_Ecto-sp13_S_contig18786.5916.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18786 1977..3373 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18786.5916.1

>prot_Ecto-sp13_S_contig18786.5916.1 ID=prot_Ecto-sp13_S_contig18786.5916.1|Name=mRNA_Ecto-sp13_S_contig18786.5916.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=161bp
MADSGTERAMAPEDMPRLGPTWSRGGGMFKPPKRPEGHVEGEDGVGTGAP
SPGTGAGGGRGSTLASSAADPPSRKAPPVFGHAARGGLEALASATTQRGF
APRDGSGGLSGGTAAVETGGVGGVRIAAGPPPPETGGGGLGPPGRWERER
TASIDKRKVCR
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mRNA from alignment at Ecto-sp13_S_contig18786:1765..3373+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18786.5916.1 ID=mRNA_Ecto-sp13_S_contig18786.5916.1|Name=mRNA_Ecto-sp13_S_contig18786.5916.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1609bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18786:1765..3373+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGAGCAGCAGCAGCGGCATCGCGAGGTTCATTGCATAGCAGGAGAGCAC
ACGAGGAGAAACAACACGGGCAGTCCTTGGCAAACATCAGCAAGAGCAGC
AGCAGCAGCAGCAGCAGCAGTAGCCGGAGCAGCCGGAGCAAGAAGCGCTT
CCCAGGCCGGGAAAGGGACTAAGGCTAGCTAGACCTGCTCCGTGTAGAGT
AGGCCGGTCGGCATGGCAGACTCCGGCACGGAGAGGGCCATGGCCCCGGA
GGACATGCCCCGCTTGGGCCCGACGTGGAGCCGGGGTGGAGGCATGTTCA
AGCCCCCCAAGAGGCCGGAAGGGCACGTGGAAGGAGTGAGTCACCGCACG
ACTTTGGGCGGTATGATAATGTTGTTGATGCCGCTTTGTATCGGCAGAGG
ACTGACTGGTGCTGGGTGTTTGGTGTAACCTTGAATTGTTAAGGCGCTTT
TCGGGAGGGGGGGGTCTTGTTTTGCGGCAAAAGACAAGGGTCTGGAGTCG
GACTCCGTGTAGAATACTGCAATTGTCTGATTCATGCGCGTCTCGTTTTA
TTTTGTGTCGTGTGACGAGCGCATCACCGCAATATGCATGCTACGCGTGT
AGGTTACGCCGGGGGGGCGGGCGGGGGATCTCCTGATGTAAATGGATCGG
GAGGGTATGCACCACAATAGCGTTGGAGTTGATGTATCCACGAGGCCCCC
GACGGTGTGCACGTGACACGTGAGTGTTCCCTCCCCTGGAAAACATGTGC
CCCTTTTCTCGCGATGTAGATCGGGAGGTGTAGTACAGGATTGAAAAGGA
CCCACGACCCACGCACACACACGAGTGTCCGCCTGAGACGGGGGGGAACC
TGAACGTGAACGCGTCCCCGCTAATCCTCCCTTCCTCCCTCCCTGTCCCC
TTCTCGCCGCCCCACCCTGATTTCGGAACCTACAGGAAGATGGCGTTGGG
ACGGGGGCACCCTCGCCGGGCACCGGTGCCGGGGGAGGGCGGGGGTCCAC
CCTGGCTTCCTCGGCTGCCGATCCGCCTTCCAGGAAGGCGCCGCCCGTCT
TCGGGCACGCGGTAAGAAAGCGGTGGGCGGGTGGGGTTGGGGGGGGCGGT
TTGGTTGTTGGTGTGGCTGTTTTCCGCACGACACTGATGTTCCCACGAAC
AGCACTGATCGGTGTTGTTTGTTCATTTGGTGTTGTCCTTCAAGTTATTG
GGGTCGCTGTGGTTGCACTGGTGTAGGTGTGAGCCGGTCGTTACCCCTGC
TACCCCTGCATTTATCCCGCTTTTGTCGTGTTGGCGGCACTTTTGCCGTA
TGCTCTCACCTGTTGACCAGAAGTTTCTTTGTTCCTCTTGTCTCCCATTC
GCAATCCTCACAACACCGACAACAGGCAAGGGGCGGCCTGGAAGCGCTTG
CCAGCGCTACAACCCAGCGCGGCTTCGCCCCCCGCGACGGCAGCGGCGGC
CTCTCCGGGGGCACGGCGGCCGTGGAAACGGGAGGGGTGGGGGGCGTGCG
CATCGCCGCCGGACCCCCGCCGCCGGAGACGGGCGGAGGCGGACTGGGAC
CGCCGGGTCGCTGGGAACGGGAGCGCACGGCTTCGATCGACAAGCGCAAG
GTGTGTCGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18786:1765..3373+

>mRNA_Ecto-sp13_S_contig18786.5916.1 ID=mRNA_Ecto-sp13_S_contig18786.5916.1|Name=mRNA_Ecto-sp13_S_contig18786.5916.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=483bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18786:1765..3373+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCAGACTCCGGCACGGAGAGGGCCATGGCCCCGGAGGACATGCCCCG
CTTGGGCCCGACGTGGAGCCGGGGTGGAGGCATGTTCAAGCCCCCCAAGA
GGCCGGAAGGGCACGTGGAAGGAGAAGATGGCGTTGGGACGGGGGCACCC
TCGCCGGGCACCGGTGCCGGGGGAGGGCGGGGGTCCACCCTGGCTTCCTC
GGCTGCCGATCCGCCTTCCAGGAAGGCGCCGCCCGTCTTCGGGCACGCGG
CAAGGGGCGGCCTGGAAGCGCTTGCCAGCGCTACAACCCAGCGCGGCTTC
GCCCCCCGCGACGGCAGCGGCGGCCTCTCCGGGGGCACGGCGGCCGTGGA
AACGGGAGGGGTGGGGGGCGTGCGCATCGCCGCCGGACCCCCGCCGCCGG
AGACGGGCGGAGGCGGACTGGGACCGCCGGGTCGCTGGGAACGGGAGCGC
ACGGCTTCGATCGACAAGCGCAAGGTGTGTCGC
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