mRNA_Ecto-sp13_S_contig18779.5913.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18779.5913.1
Unique NamemRNA_Ecto-sp13_S_contig18779.5913.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18779.5913.1 vs. uniprot
Match: D7FWS8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWS8_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 1.500e-14
Identity = 44/88 (50.00%), Postives = 53/88 (60.23%), Query Frame = 3 
Query:  591 KPIDPQRMPTLVKLLDAVLEVEPWNTERHGKNTGRAWAECGERVPAYLK-GCRSRPHEFVRQNAFRLVRQLYAPNSHAARTWSPEVKQ 851
            +P   ++M  L++LLDAVLEVEPWN  RH K    AW ECG RVP YLK G R+ P   V+Q  FRL  QL  P +       PEVK+
Sbjct:   45 RPRRDEKMALLLRLLDAVLEVEPWNLARHTK-VSEAWEECGRRVPGYLKEGARTEPRLLVQQQVFRLGDQLIDPTAKTPWKSYPEVKR 131
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18779.5913.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWS8_ECTSI1.500e-1450.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18779contigEcto-sp13_S_contig18779:27..1872 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1052
Hectar predicted targeting categoryother localisation
Exons2
Cds size942
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462960.7615077-UTR-Ecto-sp13_S_contig18779:26..681681462960.7615077-UTR-Ecto-sp13_S_contig18779:26..68Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18779 27..68 -
1681462960.7882752-UTR-Ecto-sp13_S_contig18779:1804..18721681462960.7882752-UTR-Ecto-sp13_S_contig18779:1804..1872Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18779 1805..1872 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462960.770072-CDS-Ecto-sp13_S_contig18779:68..4371681462960.770072-CDS-Ecto-sp13_S_contig18779:68..437Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18779 69..437 -
1681462960.778348-CDS-Ecto-sp13_S_contig18779:1231..18041681462960.778348-CDS-Ecto-sp13_S_contig18779:1231..1804Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18779 1232..1804 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18779.5913.1prot_Ecto-sp13_S_contig18779.5913.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18779 69..1804 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18779.5913.1

>prot_Ecto-sp13_S_contig18779.5913.1 ID=prot_Ecto-sp13_S_contig18779.5913.1|Name=mRNA_Ecto-sp13_S_contig18779.5913.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=314bp
MDGKGPEAAERERPDKQQQGTGNGGCGDLHFGCGRCCPCCDRITALLESG
AVKRARLDASQRDGGDGNESETVETGRPGEQQQQGAGNDKEPSGDDRQLH
ARKGGCASLLESGAVKRARLDDSQLSSSGRHYRRRRDDPEWRAAQAAKRA
QREHRDDPEWRAAEAAKRAQRKPPKPIDPQRMPTLVKLLDAVLEVEPWNT
ERHGKNTGRAWAECGERVPAYLKGCRSRPHEFVRQNAFRLVRQLYAPNSH
AARTWSPEVKQRVGALADKLTADPRYRDKFTRPTEDPTHGKPGTPQQQQE
RERREPEGTVANV*
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mRNA from alignment at Ecto-sp13_S_contig18779:27..1872-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18779.5913.1 ID=mRNA_Ecto-sp13_S_contig18779.5913.1|Name=mRNA_Ecto-sp13_S_contig18779.5913.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1846bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18779:27..1872- (Ectocarpus species13 EcNAP12_S_4_19m)
CTGCGGAGCCCGGAGCACGAGCCCCGGCGGTAGCAAAAGGGGCCTAGCAA
AAAACAAGGAGCCCGATCATGGATGGCAAGGGGCCGGAGGCGGCCGAGAG
GGAACGCCCAGACAAACAGCAGCAGGGCACAGGGAACGGTGGTTGTGGTG
ACCTGCACTTTGGTTGTGGACGCTGCTGTCCCTGCTGTGACCGCATCACT
GCTTTGCTGGAGTCGGGGGCGGTCAAGAGGGCGCGGCTCGATGCCAGTCA
GCGGGACGGCGGGGACGGCAACGAGTCGGAGACGGTCGAGACGGGTCGGC
CCGGCGAGCAGCAGCAGCAGGGCGCCGGGAATGACAAGGAACCGTCGGGG
GACGACAGGCAGCTCCACGCCAGAAAGGGTGGTTGCGCTTCTTTGCTGGA
GTCGGGGGCGGTCAAGAGGGCGCGGCTCGATGACAGTCAGCTTAGCAGCA
GCGGCCGCCACTACCGGAGGCGCCGCGATGACCCAGAATGGAGGGCGGCA
CAAGCTGCGAAGCGCGCCCAGCGGGAACACCGCGATGACCCAGAATGGAG
GGCGGCAGAAGCTGCGAAGCGCGCCCAGCGGAAACCTCCGAAACCTATCG
ACCCGCAGAGAATGCCCACTCTCGTGAAGCTCCTCGACGCGGTGAGTTTT
GAGAGTTCACCTTTCGCTGTATAATCCTTGTGCGCCCCGAAGAGGATGGC
GCTTGATTGCGGCTGGCATCTTGCACGAGGTTTTGGCCGCCGCACGGCCC
GCTTGATCGTAAGCGATCCCAAGGGAGTTCTGCGTAGTGAGACTTGGGGT
GCGGTGTAGGTGAGGGTGAGAGTTCCCGTGTGTGGATAGATGTGTGATGT
ACGGCGTGACGATTGGCAGTCCCACCTCAGATGGGACTACTGTCGGAACA
CGCCGAGGGAAGGGAGCGCCTCAGGAAGGACCTTGTTATTTTCACCCACC
GCGACACCGCGACAGGTTGATTAGACTATAATGTGAGAGGGCGGTGACTT
TTGTGGACCTGATTTCCCCCAGCGCCTAAACGGACGTCGAGGCACGTGAC
ACCGCTGCAGTTGCGAGACACCCCTTCCTCTCGTCGCCGTCCCTCACATA
AATGCGGGAGCAACCTAGTGTGCGCAGTCCGTCCATACTCATGGCGGCAG
GCACCGTAGGCTGTAGGCGGGTGTCGTTGCGATGAACCGTCCTCGTCGCC
CTTTTCTTTTCCGTTGCAGCCAACTCGTCGCGCACCCCAACAGCAGGGCC
TGATACAGTGTAATGACGGTGATATACAGCAGAGGCCATGTGAAGGGCGC
ATATCAACAGGCACATCAGCTAGTGCCCATCCTCGTCTCGCCGTGCCTTC
TTGGGCATGACCCTTGCATTTGACACAGCAGTTGATCGACGCCTCTCTGT
ATCACCTTTTCATGTTGGTGCTTGCCGCCATTCAGGTGCTCGAAGTGGAA
CCGTGGAACACTGAACGCCACGGCAAAAACACGGGCAGGGCATGGGCGGA
GTGTGGAGAGCGAGTCCCTGCGTACCTCAAAGGCTGCCGCTCACGGCCCC
ATGAGTTCGTGCGGCAAAACGCGTTTCGCTTGGTTCGCCAGCTGTACGCA
CCCAACTCCCACGCTGCCCGGACATGGAGCCCGGAGGTCAAGCAGAGGGT
GGGGGCGTTGGCGGATAAGCTGACAGCGGACCCGCGTTATCGGGACAAGT
TCACCCGCCCAACGGAGGACCCCACGCATGGGAAGCCCGGAACCCCCCAG
CAGCAGCAGGAGCGCGAGCGCAGGGAGCCCGAGGGGACCGTTGCCAACGT
CTGATAACGGTACCGTTCGCGCTGTCGGGGAAGGCGTTTCGCGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18779:27..1872-

>mRNA_Ecto-sp13_S_contig18779.5913.1 ID=mRNA_Ecto-sp13_S_contig18779.5913.1|Name=mRNA_Ecto-sp13_S_contig18779.5913.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=942bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18779:27..1872- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATGGCAAGGGGCCGGAGGCGGCCGAGAGGGAACGCCCAGACAAACA
GCAGCAGGGCACAGGGAACGGTGGTTGTGGTGACCTGCACTTTGGTTGTG
GACGCTGCTGTCCCTGCTGTGACCGCATCACTGCTTTGCTGGAGTCGGGG
GCGGTCAAGAGGGCGCGGCTCGATGCCAGTCAGCGGGACGGCGGGGACGG
CAACGAGTCGGAGACGGTCGAGACGGGTCGGCCCGGCGAGCAGCAGCAGC
AGGGCGCCGGGAATGACAAGGAACCGTCGGGGGACGACAGGCAGCTCCAC
GCCAGAAAGGGTGGTTGCGCTTCTTTGCTGGAGTCGGGGGCGGTCAAGAG
GGCGCGGCTCGATGACAGTCAGCTTAGCAGCAGCGGCCGCCACTACCGGA
GGCGCCGCGATGACCCAGAATGGAGGGCGGCACAAGCTGCGAAGCGCGCC
CAGCGGGAACACCGCGATGACCCAGAATGGAGGGCGGCAGAAGCTGCGAA
GCGCGCCCAGCGGAAACCTCCGAAACCTATCGACCCGCAGAGAATGCCCA
CTCTCGTGAAGCTCCTCGACGCGGTGCTCGAAGTGGAACCGTGGAACACT
GAACGCCACGGCAAAAACACGGGCAGGGCATGGGCGGAGTGTGGAGAGCG
AGTCCCTGCGTACCTCAAAGGCTGCCGCTCACGGCCCCATGAGTTCGTGC
GGCAAAACGCGTTTCGCTTGGTTCGCCAGCTGTACGCACCCAACTCCCAC
GCTGCCCGGACATGGAGCCCGGAGGTCAAGCAGAGGGTGGGGGCGTTGGC
GGATAAGCTGACAGCGGACCCGCGTTATCGGGACAAGTTCACCCGCCCAA
CGGAGGACCCCACGCATGGGAAGCCCGGAACCCCCCAGCAGCAGCAGGAG
CGCGAGCGCAGGGAGCCCGAGGGGACCGTTGCCAACGTCTGA
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