mRNA_Ecto-sp13_S_contig18776.5912.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18776.5912.1
Unique NamemRNA_Ecto-sp13_S_contig18776.5912.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18776.5912.1 vs. uniprot
Match: D7G219_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G219_ECTSI)

HSP 1 Score: 283 bits (725), Expect = 1.880e-84
Identity = 171/175 (97.71%), Postives = 173/175 (98.86%), Query Frame = 1 
Query:  157 MIEQLSELERRSDPVAIELAGVWTSSYAVVEREMKAAAKEERQRKVEEXRERKXXAKAQEAVAKKADLEEKKVERIYKKLXXKVLREQAREKERLSRALRRLFEAEVSKRRTFARQTLQTRADAEGMAAILRDDACEGLECRTEKQQAAEDREHDILQAALASARGTAQRGSGSS 681
            MIEQLSELERRSDPVAIELAGVWTSSYAVVEREMKAAAKEERQRKVEEXRERKXXAKAQEAVAKKADLEEKKVERIYKKLXXKVLREQAREKERLSRALRRLFEAEVSKRRTFARQTLQTRADAEGMAAILRDDACEGLECRTE+QQAAEDR+HDILQAALASARGT  RGSGSS
Sbjct:    1 MIEQLSELERRSDPVAIELAGVWTSSYAVVEREMKAAAKEERQRKVEEXRERKXXAKAQEAVAKKADLEEKKVERIYKKLXXKVLREQAREKERLSRALRRLFEAEVSKRRTFARQTLQTRADAEGMAAILRDDACEGLECRTEEQQAAEDRDHDILQAALASARGTVPRGSGSS 175
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BLAST of mRNA_Ecto-sp13_S_contig18776.5912.1 vs. uniprot
Match: A0A6H5KV10_9PHAE (Bromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV10_9PHAE)

HSP 1 Score: 219 bits (558), Expect = 5.130e-62
Identity = 132/143 (92.31%), Postives = 135/143 (94.41%), Query Frame = 1 
Query:  256 MKAAAKEERQRKVEEXRERKXXAKAQEAVAKKADLEEKKVERIYKKLXXKVLREQAREKERLSRALRRLFEAEVSKRRTFARQTLQTRADAEGMAAILRDDACEGLECRTEKQQAAEDREHDILQAALASARGTAQRGSGSSS 684
            MKAAAKEER RKVEE RERK  AKAQEAVAKKADLEEKKVERIYKKL  KVLREQAREKERLSRALRRLFEAEVSKRRTFARQTLQTRADAEGMAAILRDDACEGLECRTE+QQAAEDR+HD LQAALA+ARGTA RGSGSSS
Sbjct:    1 MKAAAKEERLRKVEEERERKREAKAQEAVAKKADLEEKKVERIYKKLEEKVLREQAREKERLSRALRRLFEAEVSKRRTFARQTLQTRADAEGMAAILRDDACEGLECRTEEQQAAEDRDHDTLQAALANARGTAPRGSGSSS 143
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BLAST of mRNA_Ecto-sp13_S_contig18776.5912.1 vs. uniprot
Match: D7G220_ECTSI (FYR N-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G220_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 7.900e-21
Identity = 55/59 (93.22%), Postives = 55/59 (93.22%), Query Frame = 1 
Query:    1 KGYVFEAHRAEKTFKRITKANERTKGPSNVTERSTAKLAATGFRRNVLDGRTMIEQLSE 177
            KGYVFEAHRAEKTFKRITK NERTKGPSNVTERSTAKLAATGFR  V DGRTMIEQLSE
Sbjct:  889 KGYVFEAHRAEKTFKRITKVNERTKGPSNVTERSTAKLAATGFRA-VPDGRTMIEQLSE 946
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18776.5912.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G219_ECTSI1.880e-8497.71Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KV10_9PHAE5.130e-6292.31Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
D7G220_ECTSI7.900e-2193.22FYR N-terminal domain-containing protein n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18776contigEcto-sp13_S_contig18776:702..3299 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size684
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionBromodomain and FY-rich domain protein
Ec32 orthologEc-20_002790.1
Cds size684
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462960.6980078-CDS-Ecto-sp13_S_contig18776:701..7941681462960.6980078-CDS-Ecto-sp13_S_contig18776:701..794Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18776 702..794 -
1681462960.7093728-CDS-Ecto-sp13_S_contig18776:1178..13641681462960.7093728-CDS-Ecto-sp13_S_contig18776:1178..1364Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18776 1179..1364 -
1681462960.7190535-CDS-Ecto-sp13_S_contig18776:1819..19811681462960.7190535-CDS-Ecto-sp13_S_contig18776:1819..1981Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18776 1820..1981 -
1681462960.7279239-CDS-Ecto-sp13_S_contig18776:2443..25551681462960.7279239-CDS-Ecto-sp13_S_contig18776:2443..2555Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18776 2444..2555 -
1681462960.7368484-CDS-Ecto-sp13_S_contig18776:3168..32991681462960.7368484-CDS-Ecto-sp13_S_contig18776:3168..3299Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18776 3169..3299 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18776.5912.1prot_Ecto-sp13_S_contig18776.5912.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18776 702..3299 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18776.5912.1

>prot_Ecto-sp13_S_contig18776.5912.1 ID=prot_Ecto-sp13_S_contig18776.5912.1|Name=mRNA_Ecto-sp13_S_contig18776.5912.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=228bp
KGYVFEAHRAEKTFKRITKANERTKGPSNVTERSTAKLAATGFRRNVLDG
RTMIEQLSELERRSDPVAIELAGVWTSSYAVVEREMKAAAKEERQRKVEE
ERERKREAKAQEAVAKKADLEEKKVERIYKKLEEKVLREQAREKERLSRA
LRRLFEAEVSKRRTFARQTLQTRADAEGMAAILRDDACEGLECRTEKQQA
AEDREHDILQAALASARGTAQRGSGSSS
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mRNA from alignment at Ecto-sp13_S_contig18776:702..3299-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18776.5912.1 ID=mRNA_Ecto-sp13_S_contig18776.5912.1|Name=mRNA_Ecto-sp13_S_contig18776.5912.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2598bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18776:702..3299- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGGCTACGTCTTCGAAGCGCACCGTGCGGAGAAGACGTTCAAGAGGAT
CACCAAGGCCAACGAGCGCACGAAGGGGCCGAGCAACGTCACAGAGAGGT
CCACGGCAAAGCTCGCAGCCACCGGATTCAGGTAAGTCAACACAAAATTT
GTGGCATATACTAGAGAGAGGCTTTAGGGGCACCGTTATTTCTTATTTGT
GCGGTGAGGACGAAGGCTATCTACCCTCGTCAGAGGATGAGCTATCCATG
CCTTGTTGTAAGCACGGCCATACCAAACACGATTGGGATGGAGAACTACG
AAGAGAGAGTGGAACATGAACGCACTCCATCTATATCCAACATGGTTTGT
TCTGATCGAGAGGGCCGTACAACAGCAGTCAGAATGATGCCTGAACACGA
TTGGGACGAGGAACTACGAAGGGCGGGGGAGGGCGTACTTTTCTGTTTTG
CATGCCTTAGCGGCAAGACCATTGACCACGCGTCCTCGAGAGGCTAGAGC
ATTGTTCTCACAGGAGGAGCGATCACCGATGGCCAATCGTTCCTTCCTAC
TTTGGCAAAGCAGGCTCAAAAAATGTCTTACCTAGTCAATCTATCCTAAC
GATATCACTTGCCGCCTTTTCACACCACTTCCTAGTACAGCTACCGTCTT
CTCTCTATTTCATGCCTCAAACATCTCCCTATACAAGTACGAAGGAGGAC
GGGAACAGTGACCGCACTCTCTCTCTATTTATGTATGTCCGCAGGAGGAA
CGTGCTCGACGGGAGGACGATGATCGAACAGCTCTCGGAGCTTGAGAGGC
GCTCGGACCCCGTGGCCATCGAGCTCGCCGGCGTGTGGACATCCAGCTAC
GCGGTGGTGAGCGAGATTTTTTGTTGTTCTGTTGCCGTGTTTTCCCTGTT
TCCGGTTGACATGGACCTTGTCGTTGCTGTGCTGCGGTCGGGTGTCAGCC
TCCACGGCAGTGGCAAGAAGTATTGGGGCATCGGCAAGAGCGATATCTAC
CACCGTCCGTTCGTCGATCGATGGAACAATTAGCACGGTCAATGTTTGCT
GCGTTTTCCATACAAATATCGTGGTCGCCGTATATTTTCGATCATTGATA
TGAAATAACGGGGTCGATTTTTGCCGCGTTTTTCTCCGGCTGCTGATTCA
GTTAAGGCGGTCGATATTGCTTGTCATTTTTATCGATCATTTATACAAAT
GATGTGGTCGATTTCGCTGCCGTTTTTTTCGATCGCCGACGTAACGTGGT
AAATTTTTGCTGTCATGTACTTTGATACAAAGAACTTGGTCGATTTTGCG
TTGTTTTTCTCTGGCCAGGTGGAGAGGGAAATGAAGGCCGCGGCGAAAGA
GGAGCGTCAGAGGAAGGTGGAGGAGGAACGCGAGAGGAAGAGGGAGGCCA
AGGCTCAAGAGGCCGTGGCGAAGAAGGCGGACCTTGAGGAGAAGAAGGTC
GAGAGGATCTACAAGAAGCTCGAGGAAAAGGTGACGGCTGCCTGCGTCGC
TTGTCCGTGGTGTTGGTTCATTGTTTCTTGTTTTGGTCGGTGGTGTCGTT
GTTGTGGTTGTTGTTGTTGCTGCTGCTGTGGGTGTGGTGACGGTGGTTGG
TATTGTTGTTGGTGGTGTCATCGTGTGTTGGCGTTGCCTTCGTCATTGTT
GACACACAGCTACTCCTTCCCGTATCTTCTTCTCCGTCTTGACCAAGGCA
AAACAAGAGATCCCGTCGCCAAAATAATGAAGCAACATACATCAAGCGTT
GGAGTCAATTTCCCCATTTGAGTGGAGAAACAGTTCTGCGAGAAAAACAA
GCATTTCCAAACACGAAATCTTGGAACCTCCGTACATGTGACCTGAGAAT
CGACATATTATACACTTTGGGTGCACGAGTTTTTGTTCATCGTGGCTCTG
TCCAATCGATTTTTTCCTTCCCGCGAAAAAACAAGGTTCTGCGAGAGCAA
GCGCGCGAAAAAGAACGTCTGTCGCGGGCCCTTCGAAGACTGTTCGAAGC
CGAGGTGTCGAAGAGAAGGACCTTCGCCCGGCAGACCCTGCAAACCAGGG
CCGACGCGGAAGGGATGGCGGCCATCCTGAGGGACGACGCCTGCGAAGGT
CTGGAGTGTCGGACAGAAAAGGTGAGAACAAGAAAGAAAATGGGCGCGCC
TGTTCTCTGTCTGTCTTTCTGTGTGTGTGTGTCTCTCTCTCTGGGGGTCT
CTGTGTGTCTCTGTCTCTGTCTCTCACTGTCTCTCTCTCTTTCCCTCTTT
CTGCAGCTGTGCCCTCCGGGTTGTGTTGGCCTCTGCATTCGTTTTCCCTC
AACCTCCCACTCCTTGTGACGCACCCGCATACCCGCCCACCTGCGTGCCA
GCAACAAGCGGAGTGGTGGTGTAGACGATCAGGGATCGTCTTCTCTTGTA
TCCTTCGGCTTTTTTTGGCCCTTTTTCTTTCTTTATCCCACTGTAACGTT
CCACCCCCTTTCGATGCTGCACCGCGCCTGCCTGTCTACCTACTTTGTCT
GCCAGCAACAAGCCGCCGAGGACCGAGAACACGACATCCTACAGGCCGCG
CTTGCCAGCGCTCGCGGAACAGCACAACGCGGCAGCGGCAGCTCTAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18776:702..3299-

>mRNA_Ecto-sp13_S_contig18776.5912.1 ID=mRNA_Ecto-sp13_S_contig18776.5912.1|Name=mRNA_Ecto-sp13_S_contig18776.5912.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=684bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18776:702..3299- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGGCTACGTCTTCGAAGCGCACCGTGCGGAGAAGACGTTCAAGAGGAT
CACCAAGGCCAACGAGCGCACGAAGGGGCCGAGCAACGTCACAGAGAGGT
CCACGGCAAAGCTCGCAGCCACCGGATTCAGGAGGAACGTGCTCGACGGG
AGGACGATGATCGAACAGCTCTCGGAGCTTGAGAGGCGCTCGGACCCCGT
GGCCATCGAGCTCGCCGGCGTGTGGACATCCAGCTACGCGGTGGTGGAGA
GGGAAATGAAGGCCGCGGCGAAAGAGGAGCGTCAGAGGAAGGTGGAGGAG
GAACGCGAGAGGAAGAGGGAGGCCAAGGCTCAAGAGGCCGTGGCGAAGAA
GGCGGACCTTGAGGAGAAGAAGGTCGAGAGGATCTACAAGAAGCTCGAGG
AAAAGGTTCTGCGAGAGCAAGCGCGCGAAAAAGAACGTCTGTCGCGGGCC
CTTCGAAGACTGTTCGAAGCCGAGGTGTCGAAGAGAAGGACCTTCGCCCG
GCAGACCCTGCAAACCAGGGCCGACGCGGAAGGGATGGCGGCCATCCTGA
GGGACGACGCCTGCGAAGGTCTGGAGTGTCGGACAGAAAAGCAACAAGCC
GCCGAGGACCGAGAACACGACATCCTACAGGCCGCGCTTGCCAGCGCTCG
CGGAACAGCACAACGCGGCAGCGGCAGCTCTAGC
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