mRNA_Ecto-sp13_S_contig18770.5910.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18770.5910.1
Unique NamemRNA_Ecto-sp13_S_contig18770.5910.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18770.5910.1 vs. uniprot
Match: A0A6H5KFC2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFC2_9PHAE)

HSP 1 Score: 719 bits (1856), Expect = 2.580e-255
Identity = 393/460 (85.43%), Postives = 409/460 (88.91%), Query Frame = 1 
Query:    1 MHRTRGQQHHHGGFLSGATTGRATASVVPWMTMLFLVHSHFALATHTVFLETNMKEAWNALLSAGSXXXXXXXXXXXXAREIVDTMLADCHGRKSEGWGAECDRALYLESVLKKIDSSSSAGSTFATGAGPATNDTQQQQQQVALDSAADEIAVISEVELPFSAFFNEYAVPRRPVAILSGGGGAXXXXKSADATDGEERDDLGNQAMDTAQQDGEEENGQQRVQDLILSGIESCLPHSVDPAFGTVDGPLRACHDSLLESLPVPRYASEDFVQRFRGQDVLPVGEHAEVEHFVSGWQRLYRTRPGAYTPPTACPAGANTLISVMSGTLQVLVYSSADELPSLKPTFGNAPCSPVPSRTSAGDDGDSKSSKSEGDEHENIGEEEQFDVDNSTGEXREREEHRSGSGHAEETTTSTVLNPTREPLEEGFGLERTAADQQKQNFPMESLLNGGRVKDETEDS 1380
            M RTR  + H GG LSGATT R TASVVPWMTMLFLVHS+F LATHTVFLETNMKEAW  LLSAG XXXXXXXXXXXXAREIVDTMLADCHGRKSEGWGAECDRALYLE+VLKKIDSSSSAGS FATGAG    DTQQQQ QVALDSAA+EIAVI E ELPFSAFF+EYAVPRRPVAILSGGGG     K ADA DG+E+ DLG+QAMDTAQQDGEEENGQQRVQDLILSGIESCLPHSVDPA GTVDGPLRACHDSLLESLP+PRYASEDFVQRFRGQDVLPVGEHAEVE FVSGWQR++RTRPGAYTPPTACPAGANTLI+VMSGTLQVLVYSSAD+LPSLKPTFGNAPC PVPSRTSAGDDGDSK        HEN G+EE+FDVDN TGEX     HRSGSGHAEETTTSTVLNPTREPLEEGFGLERT ADQQKQNF MES LN  RVKDETED+
Sbjct:    1 MRRTRSHKPHFGG-LSGATTERGTASVVPWMTMLFLVHSNFVLATHTVFLETNMKEAWTVLLSAGXXXXXXXXXXXXXAREIVDTMLADCHGRKSEGWGAECDRALYLETVLKKIDSSSSAGSIFATGAGATAEDTQQQQ-QVALDSAANEIAVIYEAELPFSAFFHEYAVPRRPVAILSGGGGVGGSGKPADAADGKEQGDLGDQAMDTAQQDGEEENGQQRVQDLILSGIESCLPHSVDPALGTVDGPLRACHDSLLESLPIPRYASEDFVQRFRGQDVLPVGEHAEVERFVSGWQRIHRTRPGAYTPPTACPAGANTLITVMSGTLQVLVYSSADKLPSLKPTFGNAPCPPVPSRTSAGDDGDSKXXXXXXXXHENNGDEERFDVDNGTGEXXXXXXHRSGSGHAEETTTSTVLNPTREPLEEGFGLERTVADQQKQNFSMESSLNEARVKDETEDT 458
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BLAST of mRNA_Ecto-sp13_S_contig18770.5910.1 vs. uniprot
Match: D8LI38_ECTSI (Fibronectin type-III domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI38_ECTSI)

HSP 1 Score: 573 bits (1476), Expect = 1.180e-195
Identity = 306/375 (81.60%), Postives = 316/375 (84.27%), Query Frame = 1 
Query:  256 MLADCHGRKSEGWGAECDRALYLESVLKKIDSSSSAGSTFATGAGPATNDTQQQQQQVALDSAADEIAVISEVELPFSAFFNEYAVPRRPVAILSGGGGAXXXXKSADATDGEERDDLGNQAMDTAQQDGEEENGQQRVQDLILSGIESCLPHSVDPAFGTVDGPLRACHDSLLESLPVPRYASEDFVQRFRGQDVLPVGEHAEVEHFVSGWQRLYRTRPGAYTPPTACPAGANTLISVMSGTLQVLVYSSADELPSLKPTFGNAPCSPVPSRTSAGDDGDSKSSKSEGDEHENIGEEEQFDVDNSTGEXREREEHRSGSGHAEETTTSTVLNPTREPLEEGFGLERTAADQQKQNFPMESLLNGGRVKDETEDS 1380
            MLADCHGRKSEGWGAECDRALYLESVLKKIDSSSSAGSTFATGAG A  DTQQ QQQVALDSAA+EIAV+SE ELPFSAFF+EYAVPRRPVAILSGGGGA    K ADATDGEE+ DLG+QAM+TAQQDGEEENGQQRVQDLILSGIESCL HSVDPA GT DGPLRACHDSLLESLPVPRYASEDFVQRFRGQDVLPVGEHAEVE FVSGWQRL+RTRPGAYTPPTACPAGANTLI+VMSGTLQVLVYSSADELPSLKPTFGNAPCSPVPSRTSAGDDGDSK                          X          GHAEET TST  NPTREPLEEGFGLERT ADQQKQNF M S L+G RVKDETED+
Sbjct:    1 MLADCHGRKSEGWGAECDRALYLESVLKKIDSSSSAGSTFATGAGAAAEDTQQHQQQVALDSAANEIAVVSEAELPFSAFFHEYAVPRRPVAILSGGGGAGGSGKPADATDGEEQGDLGDQAMNTAQQDGEEENGQQRVQDLILSGIESCLAHSVDPALGTADGPLRACHDSLLESLPVPRYASEDFVQRFRGQDVLPVGEHAEVERFVSGWQRLHRTRPGAYTPPTACPAGANTLITVMSGTLQVLVYSSADELPSLKPTFGNAPCSPVPSRTSAGDDGDSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGHAEETITSTASNPTREPLEEGFGLERTTADQQKQNFSMMSSLDGARVKDETEDT 375
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18770.5910.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KFC2_9PHAE2.580e-25585.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LI38_ECTSI1.180e-19581.60Fibronectin type-III domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18770contigEcto-sp13_S_contig18770:3..2081 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1380
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-04_003100.1
Cds size1380
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462960.5900743-CDS-Ecto-sp13_S_contig18770:2..4951681462960.5900743-CDS-Ecto-sp13_S_contig18770:2..495Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18770 3..495 -
1681462960.608024-CDS-Ecto-sp13_S_contig18770:1194..20811681462960.608024-CDS-Ecto-sp13_S_contig18770:1194..2081Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18770 1195..2081 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18770.5910.1prot_Ecto-sp13_S_contig18770.5910.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18770 3..2081 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18770.5910.1

>prot_Ecto-sp13_S_contig18770.5910.1 ID=prot_Ecto-sp13_S_contig18770.5910.1|Name=mRNA_Ecto-sp13_S_contig18770.5910.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=460bp
MHRTRGQQHHHGGFLSGATTGRATASVVPWMTMLFLVHSHFALATHTVFL
ETNMKEAWNALLSAGSSSSNSTSSGGGGAREIVDTMLADCHGRKSEGWGA
ECDRALYLESVLKKIDSSSSAGSTFATGAGPATNDTQQQQQQVALDSAAD
EIAVISEVELPFSAFFNEYAVPRRPVAILSGGGGAGGSGKSADATDGEER
DDLGNQAMDTAQQDGEEENGQQRVQDLILSGIESCLPHSVDPAFGTVDGP
LRACHDSLLESLPVPRYASEDFVQRFRGQDVLPVGEHAEVEHFVSGWQRL
YRTRPGAYTPPTACPAGANTLISVMSGTLQVLVYSSADELPSLKPTFGNA
PCSPVPSRTSAGDDGDSKSSKSEGDEHENIGEEEQFDVDNSTGEEREREE
HRSGSGHAEETTTSTVLNPTREPLEEGFGLERTAADQQKQNFPMESLLNG
GRVKDETEDS
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mRNA from alignment at Ecto-sp13_S_contig18770:3..2081-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18770.5910.1 ID=mRNA_Ecto-sp13_S_contig18770.5910.1|Name=mRNA_Ecto-sp13_S_contig18770.5910.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2079bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18770:3..2081- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCATCGAACAAGGGGCCAGCAACATCATCATGGCGGCTTCTTGTCGGG
GGCGACAACTGGAAGAGCGACAGCATCAGTAGTGCCATGGATGACGATGC
TGTTCCTCGTACACTCACACTTCGCCCTCGCGACCCACACGGTGTTCCTC
GAGACAAACATGAAGGAAGCGTGGAACGCTCTACTGAGTGCAGGTAGTAG
CAGTAGCAATAGCACCAGCAGCGGCGGAGGGGGGGCGAGGGAGATCGTGG
ACACGATGCTAGCGGACTGCCATGGCCGCAAGAGCGAGGGCTGGGGGGCG
GAGTGTGACCGCGCGTTGTATCTGGAGTCCGTGCTCAAGAAGATCGATAG
CAGCAGTAGTGCGGGATCAACTTTCGCTACAGGCGCTGGTCCGGCTACTA
ACGATACGCAGCAGCAGCAGCAGCAGGTGGCGCTGGATTCGGCTGCCGAT
GAGATCGCCGTGATTTCTGAAGTGGAGCTCCCCTTCTCGGCTTTCTTCAA
TGAGTACGCAGTGCCCCGACGCCCGGTGGCGATACTCTCGGGAGGCGGTG
GGGCCGGCGGCAGCGGCAAGTCGGCAGATGCTACGGATGGCGAAGAACGA
GACGATCTCGGCAACCAAGCCATGGATACCGCTCAACAGGACGGGGAGGA
GGAGAACGGGCAACAACGCGTCCAGGATCTAATCTTGAGCGGGATAGAGT
CTTGCTTGCCACACTCGGTGGATCCAGCGTTTGGGACGGTGGATGGACCC
CTGCGTGCGTGCCACGACTCGTTGCTGGAGAGCTTGCCAGTCCCACGCTA
CGCTTCCGAGGACTTCGTGCAGCGGTTTCGGGGACAGGACGTGCTTCCGG
TCGGGGAACATGCCGAGGTTGAGCACTTCGTGTCAGGGTAGGTCTTCCAT
CCGTGCTGTGTACTACAGGCGTACCATGCTCGCATTGCGGATGAAGTTTC
TGCAGGTCGACATTTCAGTATTTACCTGGGGCTCTGAGCAGTGCTTTCAC
GTTGATGTCGCCTACAGTCATTAGCACGGGGTACCCACACGGTTGTACCC
GCATGTATACTGCGTTATGACCTCCACGTTTCACACCAAAGGCCTTGCCA
ACGCCACGATATCTTGAAAGTCCTCTCTAGAGTATTTCCTTGACCACCCG
TCTTGACTTGTAAACCTTTGACGTTGTTCGGGGACAGATCCCGAACTCTG
TGAACATCACGATCGTGGCATCTACATATCTGATGCAACGAAGTACCTCG
TATGGTAGGTGATGATGGATCTCGATGCTGCCAATAGTTGTTGTACAAAA
GCACACATGCTGTGCCGCCCACAACGCCAACAGTTTGGACACATTCCACG
TACAAGGGAGTGGCTGGATACAAACATGGTCGAGATGAGAGCGGCTGGAT
GGTCGATATTGAACAAGTACCAAGACACTTTTACAAGCACGGTGTTCCCA
GAAGGTTTTTCATGTGTACAATAACGTTCTATGCAAAGCGCATCGCGATT
AGCAGCACCGCCAGCGCCAAACCGTGCATGCCTAGACCGACAACATCAAA
TCCACGAACCCCCCCCTCTTGCCATTCCTTTCGCAGCTGGCAGCGCCTAT
ACCGTACCCGTCCAGGCGCGTACACCCCACCGACCGCTTGTCCCGCGGGG
GCGAATACCCTGATCAGCGTCATGTCAGGAACTCTCCAGGTGTTGGTCTA
CTCGTCGGCCGACGAATTACCCAGCCTCAAACCAACGTTTGGCAACGCGC
CGTGCTCTCCTGTTCCGTCTCGTACGTCTGCCGGGGACGATGGTGATTCA
AAGTCCAGCAAGTCCGAAGGCGATGAACACGAAAACATCGGCGAAGAAGA
ACAGTTTGATGTCGACAACAGTACCGGCGAGGAGAGGGAACGGGAAGAGC
ACCGCAGCGGCTCGGGGCATGCAGAGGAAACTACCACAAGCACCGTGTTG
AATCCTACTCGTGAGCCGCTAGAGGAGGGGTTTGGGCTGGAGAGAACAGC
GGCAGATCAACAGAAGCAGAACTTCCCGATGGAGAGCTTGTTGAACGGAG
GACGGGTCAAGGACGAGACGGAGGATTCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18770:3..2081-

>mRNA_Ecto-sp13_S_contig18770.5910.1 ID=mRNA_Ecto-sp13_S_contig18770.5910.1|Name=mRNA_Ecto-sp13_S_contig18770.5910.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1380bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18770:3..2081- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCATCGAACAAGGGGCCAGCAACATCATCATGGCGGCTTCTTGTCGGG
GGCGACAACTGGAAGAGCGACAGCATCAGTAGTGCCATGGATGACGATGC
TGTTCCTCGTACACTCACACTTCGCCCTCGCGACCCACACGGTGTTCCTC
GAGACAAACATGAAGGAAGCGTGGAACGCTCTACTGAGTGCAGGTAGTAG
CAGTAGCAATAGCACCAGCAGCGGCGGAGGGGGGGCGAGGGAGATCGTGG
ACACGATGCTAGCGGACTGCCATGGCCGCAAGAGCGAGGGCTGGGGGGCG
GAGTGTGACCGCGCGTTGTATCTGGAGTCCGTGCTCAAGAAGATCGATAG
CAGCAGTAGTGCGGGATCAACTTTCGCTACAGGCGCTGGTCCGGCTACTA
ACGATACGCAGCAGCAGCAGCAGCAGGTGGCGCTGGATTCGGCTGCCGAT
GAGATCGCCGTGATTTCTGAAGTGGAGCTCCCCTTCTCGGCTTTCTTCAA
TGAGTACGCAGTGCCCCGACGCCCGGTGGCGATACTCTCGGGAGGCGGTG
GGGCCGGCGGCAGCGGCAAGTCGGCAGATGCTACGGATGGCGAAGAACGA
GACGATCTCGGCAACCAAGCCATGGATACCGCTCAACAGGACGGGGAGGA
GGAGAACGGGCAACAACGCGTCCAGGATCTAATCTTGAGCGGGATAGAGT
CTTGCTTGCCACACTCGGTGGATCCAGCGTTTGGGACGGTGGATGGACCC
CTGCGTGCGTGCCACGACTCGTTGCTGGAGAGCTTGCCAGTCCCACGCTA
CGCTTCCGAGGACTTCGTGCAGCGGTTTCGGGGACAGGACGTGCTTCCGG
TCGGGGAACATGCCGAGGTTGAGCACTTCGTGTCAGGCTGGCAGCGCCTA
TACCGTACCCGTCCAGGCGCGTACACCCCACCGACCGCTTGTCCCGCGGG
GGCGAATACCCTGATCAGCGTCATGTCAGGAACTCTCCAGGTGTTGGTCT
ACTCGTCGGCCGACGAATTACCCAGCCTCAAACCAACGTTTGGCAACGCG
CCGTGCTCTCCTGTTCCGTCTCGTACGTCTGCCGGGGACGATGGTGATTC
AAAGTCCAGCAAGTCCGAAGGCGATGAACACGAAAACATCGGCGAAGAAG
AACAGTTTGATGTCGACAACAGTACCGGCGAGGAGAGGGAACGGGAAGAG
CACCGCAGCGGCTCGGGGCATGCAGAGGAAACTACCACAAGCACCGTGTT
GAATCCTACTCGTGAGCCGCTAGAGGAGGGGTTTGGGCTGGAGAGAACAG
CGGCAGATCAACAGAAGCAGAACTTCCCGATGGAGAGCTTGTTGAACGGA
GGACGGGTCAAGGACGAGACGGAGGATTCG
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