mRNA_Ecto-sp13_S_contig18764.5908.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig18764.5908.1 vs. uniprot
Match: D7G0T6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0T6_ECTSI) HSP 1 Score: 561 bits (1446), Expect = 1.800e-191 Identity = 287/318 (90.25%), Postives = 294/318 (92.45%), Query Frame = 1
Query: 202 GIFPLRYR*ERTPNEVLEDMASKFTFHFIGDSTIRRLGESFVSIFTGQGSIHEMVHSDLDFSTGNLKVLFYWAPFCFGPESVGAKLATVMDGVKATKRGDKRTVIITAFGVHDSYELPLLVKGSASTSYMDALPPDFVDNGSVRTATLGACQATTAQLVQAAAAKVMAWADPTAEKGQLSKAAHASPNTTTRSTTETDGVSLSFGAPGTTAATDPXXXXXXLMQNNRYPPNSPEDNYLEDLRRVQRREVQEWEAVEGNEDAEGGIYLVDDSVSLFRNLSCYRESNPIHFHEPVKLVEGKMLWDLLALVERESASPLAP 1155
G+ P + ERTPNEVLEDMASKFTFHFIGDSTIRRLGESFVSIFTGQGS H+MVHSDLDFSTGNL+ FYWAPFCFG ESVGAKLATVMDGVK KRGDKRTVIITAFGVHDSYELPLLVKGSASTSYMDALPPDFVDNGSVRTATLGACQATTAQLVQAAAAKVMAWADPTAEKGQ SKA HASPNTTTRSTTET+GVS SFGAPGTTAATDP LMQNNRYPPNSPEDNYLE+LRR+QR EVQEWEA EGNEDAEGGIYLVDDSVSLFRNLSCYRE NPIHFHEPVKLVEGKMLWDLLALVERESASPL P
Sbjct: 122 GVLPCGFE-ERTPNEVLEDMASKFTFHFIGDSTIRRLGESFVSIFTGQGSKHDMVHSDLDFSTGNLETRFYWAPFCFGSESVGAKLATVMDGVKTAKRGDKRTVIITAFGVHDSYELPLLVKGSASTSYMDALPPDFVDNGSVRTATLGACQATTAQLVQAAAAKVMAWADPTAEKGQWSKAVHASPNTTTRSTTETNGVSFSFGAPGTTAATDPTPPLVFLMQNNRYPPNSPEDNYLEELRRIQRGEVQEWEAGEGNEDAEGGIYLVDDSVSLFRNLSCYRERNPIHFHEPVKLVEGKMLWDLLALVERESASPLVP 438
BLAST of mRNA_Ecto-sp13_S_contig18764.5908.1 vs. uniprot
Match: A0A6H5L6U4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6U4_9PHAE) HSP 1 Score: 304 bits (778), Expect = 1.140e-90 Identity = 186/361 (51.52%), Postives = 223/361 (61.77%), Query Frame = 1
Query: 229 ERTPNEVLEDMASKFTFHFIGDSTIRRLGESFVSIFTGQGSIHEMVHSDLDFSTGNLKVLFYWAPFCFGPESVGAKLATVMDGVKATKRGDKRTVIITAFGVHDSYELPLLVKGSASTSYMDALPPDFVDNGSVRTATLGACQATTAQLVQAAAAKVMAW--ADPTAEKGQLSKAAHASPNTTTR------STTETDGV----------------SLSFGAPGTTAATDPXXXXXXLMQNNRYPPNSPEDNYLEDLRRVQRREVQEWEAVEGN--EDAEGGIYLVDDSVSLFRNLSCYRESNPIHFHEPVKLVEGKMLWDLLALVERESASP----LAP*WGGVGSDGGGGADRGLVIFSL 1221
ER E +ED+ASK++FHFIGDST RRLGESFVSIFTG+GS H +V D++FS+GNLKV FYWAP C GPESVGA L TVMD V A K G KR VIITAFGVHD++EL G S SY LP D V+ +R A LGAC+ T QLV+ AAA + A P E+ A H PN +T+ S + G+ +L AP AA+ P LMQNNRYPP S E+ + EDL R+QR+ V EWEA EG+ +D E G++LVDDSV L+ NLSCYR +NPIHF EPVKL+EGKMLWDLL LV+ S P LA G +DG GG + SL
Sbjct: 115 ERLGKEAMEDIASKYSFHFIGDSTSRRLGESFVSIFTGRGSTHPVVQRDINFSSGNLKVHFYWAPLCSGPESVGAMLTTVMDAVLAAKDG-KRAVIITAFGVHDAFELQHAANGHGSPSYQSTLPQDIVEKDGMRAAALGACRDATTQLVRTAAATAVPGTAAPPVEEEQSPGDAQHQLPNVSTQVGRHETSQKQAAGIPPNNVRGGSVGAGKEDALDASAPP--AASGPLQPLLFLMQNNRYPPGSVENAFQEDLHRIQRQAVGEWEASEGSKGDDGERGLFLVDDSVGLYGNLSCYRSANPIHFDEPVKLMEGKMLWDLLVLVDNGSVLPPTLLLANEDYGDSADGEGGGRFSINPLSL 472
BLAST of mRNA_Ecto-sp13_S_contig18764.5908.1 vs. uniprot
Match: D7G0V6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0V6_ECTSI) HSP 1 Score: 293 bits (751), Expect = 3.770e-87 Identity = 181/364 (49.73%), Postives = 220/364 (60.44%), Query Frame = 1
Query: 229 ERTPNEVLEDMASKFTFHFIGDSTIRRLGESFVSIFTGQGSIHEMVHSDLDFSTGNLKVLFYWAPFCFGPESVGAKLATVMDGVKATKRGDKRTVIITAFGVHDSYELPLLVKGSASTSYMDALPPDFVDNGSVRTATLGACQATTAQLVQAAAAKVMAW--ADPTAEKGQLSKAAHASPNTTTR------STTETDGVSLS-----------------FGAPGTTAATDPXXXXXXLMQNNRYPPNSPEDNYLEDLRRVQRREVQEWEAVEGN--EDAEGGIYLVDDSVSLFRNLSCYRESNPIHFHEPVKLVEGKMLWDLLALVERESASP----LAP*WGGVGSDGGGGADRGLVIFSLFL 1227
ER + +E +ASK++FH IGDST RRLGESFVSIFTG+GSIH + D DFS+GNLKV FYWAP C GPESVGA LA+VMD V+A K G KR VIITA+GVHD++EL G S SY ALP D V+ +R A LGAC+ TT QLV+AAAA + A P E+ PN +T+ T+E + GA AA+ P LMQNNRYPP S E+ + EDL +QR+ V EWEA EG+ + E G++LVD+SV L+ NLSCYR +NPIHF EPVKL+EGKMLWDLL LV+ S P LA G +DG GG + SL L
Sbjct: 82 ERLGKDAMEYIASKYSFHLIGDSTSRRLGESFVSIFTGRGSIHRIAQRDRDFSSGNLKVHFYWAPLCSGPESVGAMLASVMDAVRAAKDG-KRAVIITAYGVHDAFELHHAANGHGSPSYKSALPQDVVEKDGMRAAALGACRDTTTQLVRAAAATAVPGTEAPPVEEEQSPGDGRRQLPNVSTKVEVGPHETSEKQAAGIPPHNVRGGSVGAGNEDTLLGASAPPAASGPLQPLLFLMQNNRYPPGSVENAFQEDLHIIQRQVVGEWEASEGSKGDGGERGLFLVDNSVGLYGNLSCYRNANPIHFDEPVKLMEGKMLWDLLVLVDNGSVLPPTVFLADEDYGHSADGEGGDSFSMNSLSLSL 444
BLAST of mRNA_Ecto-sp13_S_contig18764.5908.1 vs. uniprot
Match: D7FZD7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZD7_ECTSI) HSP 1 Score: 142 bits (357), Expect = 1.990e-33 Identity = 106/300 (35.33%), Postives = 137/300 (45.67%), Query Frame = 1
Query: 232 RTPNEVLEDMASKFTFHFIGDSTIRRLGESFVSIFTGQGSIHEMVHSDLDFSTGNLKVLFYWAPFCFGPESVGAKLATVMDGVKATKRGDKRTVIITAFGVHDSYELPLLVKGSASTSYMDALPPDFVDNGSVRTATLGACQATTAQLVQAAAAKVMAWADPTAEKGQLSKAAHASPNTTTRSTTETDGVSLSFGAPGTTAATDPXXXXXXLMQNNRYPPNSPEDNYLEDLRRVQRREVQEWEAVEGNEDAEGGIYLVDDSVSLFRNLSCYRESNPIHFHEPVKLVEGKMLWDLLALVER 1131
R P ED+AS++ HF+GDST RRL ESF+SI TG S H H + + L+V F+WAP+C + L +MD G +R +I+TAFGV DS +G A LG C LVQ A P ++ ASP L F L+QNN + P S +D +L DL ++QR V G ++A +YLV D S+F LSCYR S IHF++PVKLVEGKMLWDL+ LV R
Sbjct: 109 RLPTSTFEDLASRYAIHFMGDSTSRRLVESFISIATGNRSAHVYYHESRNLTVDGLQVNFHWAPYC--RQVKNESLHEIMDNQALD--GGRRAIIVTAFGVWDS------------------------SHGGGDEAALGVCADAVRSLVQVA--------QPPPAGSTTAENIAASPP-------------LVF-----------------LLQNNPFLPGSEQDLFLRDLHQIQREIVDS-----GEQEA---VYLVHDRESIFNRLSCYRMSESIHFNDPVKLVEGKMLWDLIELVAR 334
BLAST of mRNA_Ecto-sp13_S_contig18764.5908.1 vs. uniprot
Match: A0A6H5JGU9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU9_9PHAE) HSP 1 Score: 135 bits (339), Expect = 2.950e-29 Identity = 117/362 (32.32%), Postives = 163/362 (45.03%), Query Frame = 1
Query: 238 PNEVLEDMASKFTFHFIGDSTIRRLGESFVSIFTGQGSIHEMVHSDLDFSTGNLKVLFYWAPFCFGPESVGAKLATVMDGVKATKRGD-----------------KRTVIITAFGVHDSYELPLLVKGSASTS-YMDALPPDFVDNGSVRTATLGACQATTAQLVQAAAAKVM------------------AWADPTAEKGQLSKAAHASPN---------------TTTRSTTETDG---------VSLSFGAPGTTAATDPXXXXXXLMQNNRYPPNSPEDNYLEDLRRVQRREVQEWEAVEGNEDAEGG-------IYLVDDSVSLFRNLSCYRESNPIHFHEPVKLVEGKMLWDLLAL 1122
P+E L D+A K+ F FIGDST RRL ESFVSI +G+ S H +VH +D S G+LKV F WAP C + A + + G +++ G +RTVI TAFGVHD+ EL + Y LP + V A L C+ T +LV+ AAA + ++ T E G+ +A ++ + E+DG XXX L+QNN + P S D +L+ L R+Q + + E A +G E ++L+ D SL+ ++SCYR IHFHEPVKLVEGKMLW L+ +
Sbjct: 275 PDEKLLDLALKYEFLFIGDSTTRRLAESFVSIVSGRASTHPVVHHRIDMSRGDLKVTFLWAPCCSVDGGISAAVRDAL-GFRSSTYGSGNNNDGXXXXXXENGSPRRTVIFTAFGVHDATELRKAERDPELNQWYPMGLPQEAVAAQGPTAAALETCRDATRELVEVAAAXXXXXXXXXXXDGGGDVGNNPSLSEATGEGGEGQVVVNADGRRDGIADKKLRGGGGVSSEVAVHESDGHXXXXXXXXXXXXXXXXXXXXXXXXXXXLVFLLQNNPFNPRSELDYFLQQLHRIQEQVIDEAAAKQGCEXXXXXXXXXXXRVFLLRDRDSLYSSMSCYRIDGSIHFHEPVKLVEGKMLWHLVEI 635
BLAST of mRNA_Ecto-sp13_S_contig18764.5908.1 vs. uniprot
Match: A0A6H5JFC3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFC3_9PHAE) HSP 1 Score: 127 bits (318), Expect = 2.570e-28 Identity = 98/271 (36.16%), Postives = 135/271 (49.82%), Query Frame = 1
Query: 250 LEDMASKFTFHFIGDSTIRRLGESFVSIFTGQGSIHEMVHSDLDFSTGNLKVLFYWAPFCFGPESVGAKLATVMDGVKAT--KRGDKRTVIITAFGVHDSYEL-----PLLVKGSASTSYMDALPPDFVDNGSVRTATLGACQATTAQLVQAAAAKVMAWADPTAEKGQLSKAAH--------ASPNTTTRSTTETDG--VSLSFGAPGTTAATDPXXXXXXLMQNNRYPPNSPEDNYLEDLRRVQRREVQEWEAVEGNEDAEGGIYLVDD 1011
LED++S++ FHF+GDST RRL ESFVSI TGQ S H +VH +D S+G+LKV+F+WAP C S K+ +D + A + GD R +IITAFGVH+++ L L + +A +S+ D A L C+ T+QLV A + A +A + +L H P T T G VSLS G L+QNN Y P S ED +LE L VQ R V++ G++++DD
Sbjct: 79 LEDLSSRYVFHFVGDSTTRRLAESFVSILTGQASPHFVVHERIDMSSGSLKVIFHWAPMCIDARS---KIQASIDEIVAAQLRNGDARAIIITAFGVHNAHRLYGDQAGTLPRYTAPSSH------DTFREEDAEAAALNVCEEVTSQLVHVA--NLTAGRSASANQEKLYSPGHRGLDVADEGDPKFGRPRGTWTGGGDVSLSIDDEG-------LPPLVFLLQNNHYFPGSEEDRFLEHLHDVQDRVVRQGAKDIARHGENAGVFVLDD 331
BLAST of mRNA_Ecto-sp13_S_contig18764.5908.1 vs. uniprot
Match: D7FUL3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL3_ECTSI) HSP 1 Score: 125 bits (315), Expect = 2.760e-26 Identity = 124/385 (32.21%), Postives = 163/385 (42.34%), Query Frame = 1
Query: 232 RTPNEVLEDMASKFTFHFIGDSTIRRLGESFVSIFTGQGSIHEMVHSDLDFSTGNLKVLFYWAPFCFGPESVGAKLATVMDGVKATKRGD-----------------KRTVIITAFGVHDSYELPLLVKGSASTS-YMDALPPDFVDNGSVRTATLGACQATTAQLVQAAAAKVMAWA-------------------DPT-AEKGQLSKAAHASPNTTTR---------------------------STTETDGVSLSFGAPGTTAATDPXXXXXX-------LMQNNRYPPNSPEDNYLEDLRRVQRREVQEWEA--------VEGNEDAEGG----------IYLVDDSVSLFRNLSCYRESNPIHFHEPVKLVEGKMLWDLL 1116
R P+E L D+ASK+ F FIGDST RRL ESFVSI +G+ S H +VH +D S G+LKV F WAP C V A + + +T D +RTVI TAFGVHD+ EL + Y LP V A L C+ T +LV+ AA DP+ +E + N R + E+DG + XXXXXX L+QNN + P S D +L+ L R+Q + + E A E ++D E ++L+ D SL+ ++SCYR IHFHEPVKLVEGKMLW L+
Sbjct: 245 RMPDEKLLDLASKYEFLFIGDSTTRRLAESFVSIVSGRASTHPVVHHRIDMSRGDLKVTFLWAPCCSVGGGVSAAVRDALGFRSSTYGSDNNYDGDDXXXXXXXXSPRRTVIFTAFGVHDATELRKAERDPELNQWYPMGLPQAAVATDGPTAAALQTCRDATRELVEVAAXXXXXXXXXXXXXXXXXXXXXXXXXKDPSLSEAXXXXXXXQVAVNADGRRDGIADKKLRGGXXXXXXXXXXXXXEVAVHESDGHGSNXXXXXXXXXXXXXXXXXXXXXXXVFLLQNNPFNPGSEHDYFLQQLHRIQEQVIDEAAAEQAAAKQGCEQHQDCEQXXXXXXXXXXRVFLLRDRDSLYSSMSCYRIDRSIHFHEPVKLVEGKMLWHLV 629 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18764.5908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig18764.5908.1 >prot_Ecto-sp13_S_contig18764.5908.1 ID=prot_Ecto-sp13_S_contig18764.5908.1|Name=mRNA_Ecto-sp13_S_contig18764.5908.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=300bp MASKFTFHFIGDSTIRRLGESFVSIFTGQGSIHEMVHSDLDFSTGNLKVLback to top mRNA from alignment at Ecto-sp13_S_contig18764:258..3404+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig18764.5908.1 ID=mRNA_Ecto-sp13_S_contig18764.5908.1|Name=mRNA_Ecto-sp13_S_contig18764.5908.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3147bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18764:258..3404+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18764:258..3404+ >mRNA_Ecto-sp13_S_contig18764.5908.1 ID=mRNA_Ecto-sp13_S_contig18764.5908.1|Name=mRNA_Ecto-sp13_S_contig18764.5908.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=900bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18764:258..3404+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |