mRNA_Ecto-sp13_S_contig18761.5906.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18761.5906.1
Unique NamemRNA_Ecto-sp13_S_contig18761.5906.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18761.5906.1 vs. uniprot
Match: A0A6H5JBC7_9PHAE (Delta-1-pyrroline-5-carboxylate synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBC7_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 3.430e-30
Identity = 85/92 (92.39%), Postives = 85/92 (92.39%), Query Frame = 3 
Query:  321 MSGFPPPSNSLPPVNIGQSASTAGGXXXXXXXXXXXXXXXXXXXXXTVAVADMSSIVSGGRELYGNMMVGSLPAMGGGLGESAPPSPELGPV 596
            MSGFPPPSNSLPPVNIGQSASTAGG    XXXXXXXXXXXXXXXX TV VADMSSIVSGG ELYGNMMVGSLPAMGGGLGESAPPSPELGPV
Sbjct:    1 MSGFPPPSNSLPPVNIGQSASTAGGGGSVXXXXXXXXXXXXXXXXTTVPVADMSSIVSGGGELYGNMMVGSLPAMGGGLGESAPPSPELGPV 92
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18761.5906.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JBC7_9PHAE3.430e-3092.39Delta-1-pyrroline-5-carboxylate synthase n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18761contigEcto-sp13_S_contig18761:32..627 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size596
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-07_007270.2
Cds size411
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462960.3314645-UTR-Ecto-sp13_S_contig18761:31..1051681462960.3314645-UTR-Ecto-sp13_S_contig18761:31..105Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18761 32..105 -
1681462960.3519793-UTR-Ecto-sp13_S_contig18761:516..6271681462960.3519793-UTR-Ecto-sp13_S_contig18761:516..627Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18761 517..627 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462960.3432927-CDS-Ecto-sp13_S_contig18761:105..5161681462960.3432927-CDS-Ecto-sp13_S_contig18761:105..516Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18761 106..516 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18761.5906.1prot_Ecto-sp13_S_contig18761.5906.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18761 106..516 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18761.5906.1

>prot_Ecto-sp13_S_contig18761.5906.1 ID=prot_Ecto-sp13_S_contig18761.5906.1|Name=mRNA_Ecto-sp13_S_contig18761.5906.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=137bp
MEHLLCSPPRSRETSLPVHDRSNSFVPTLQFFLRVCMRRAHDPGFSNATT
PVRRSDTPPHPPSTQQQAPSCRGSLRHQTACPRSTSGSPRLPPVAAGRST
ARQQRAVQQPRAPAPRPSPWPTCRVLCPGAGSCTAI*
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mRNA from alignment at Ecto-sp13_S_contig18761:32..627-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18761.5906.1 ID=mRNA_Ecto-sp13_S_contig18761.5906.1|Name=mRNA_Ecto-sp13_S_contig18761.5906.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=596bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18761:32..627- (Ectocarpus species13 EcNAP12_S_4_19m)
GGTTCGGATCGTAATTGGGTGTGCGGTGTATCATGTTCAACACTCTCTTT
GCTTGTGTGCACACTCGTGGACATATCCAGACTGAACATCGACGCGCTGA
CCGCTGAGTCTATGGAACACCTGCTTTGCTCCCCACCTCGCTCGCGCGAA
ACTAGCCTCCCAGTCCACGATCGCTCCAACAGCTTCGTTCCCACCCTCCA
ATTTTTCTTGCGCGTGTGCATGCGTCGGGCGCACGACCCAGGATTCAGCA
ACGCCACCACACCGGTACGCAGGAGCGACACACCACCACACCCACCAAGC
ACACAGCAGCAGGCACCATCATGTCGGGGTTCCCTCCGCCATCAAACAGC
CTGCCCCCGGTCAACATCGGGCAGTCCGCGTCTACCGCCGGTGGCGGCGG
GTCGGTCGACGGCTCGTCAACAGCGGGCAGTACAACAACCGCGGGCACCA
GCACCACGACCGTCGCCGTGGCCGACATGTCGAGTATTGTGTCCGGGGGC
AGGGAGCTGTACGGCAATATGATGGTCGGCAGCCTTCCCGCGATGGGGGG
AGGCCTTGGTGAGTCGGCACCGCCGTCGCCGGAGCTCGGACCGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18761:32..627-

>mRNA_Ecto-sp13_S_contig18761.5906.1 ID=mRNA_Ecto-sp13_S_contig18761.5906.1|Name=mRNA_Ecto-sp13_S_contig18761.5906.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=411bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18761:32..627- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAACACCTGCTTTGCTCCCCACCTCGCTCGCGCGAAACTAGCCTCCC
AGTCCACGATCGCTCCAACAGCTTCGTTCCCACCCTCCAATTTTTCTTGC
GCGTGTGCATGCGTCGGGCGCACGACCCAGGATTCAGCAACGCCACCACA
CCGGTACGCAGGAGCGACACACCACCACACCCACCAAGCACACAGCAGCA
GGCACCATCATGTCGGGGTTCCCTCCGCCATCAAACAGCCTGCCCCCGGT
CAACATCGGGCAGTCCGCGTCTACCGCCGGTGGCGGCGGGTCGGTCGACG
GCTCGTCAACAGCGGGCAGTACAACAACCGCGGGCACCAGCACCACGACC
GTCGCCGTGGCCGACATGTCGAGTATTGTGTCCGGGGGCAGGGAGCTGTA
CGGCAATATGA
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