mRNA_Ecto-sp13_S_contig18753.5903.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18753.5903.1
Unique NamemRNA_Ecto-sp13_S_contig18753.5903.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18753.5903.1 vs. uniprot
Match: A0A6H5KE84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE84_9PHAE)

HSP 1 Score: 196 bits (497), Expect = 1.090e-57
Identity = 90/111 (81.08%), Postives = 93/111 (83.78%), Query Frame = 3 
Query:  360 NCYAADTAPRPEYRWCSAE*VDQPAPLPDRSNGWRYLGPREGETYGRQAVFEAMNRLRLPFPRLSPGPGHRWFNSHPIGGDPDLPDFRAWARTMLLRRLVHPRDADAWRAA 692
            N YA  TA RPEYRWC AE VDQ APLPDRSNGWRYLGPREG+TY RQAVF    RLRLPFPRL  GPGHRWFNSH +GGDPDL DF+AWARTML R LVHPRDADAWRAA
Sbjct:   10 NYYAGGTARRPEYRWCYAEQVDQAAPLPDRSNGWRYLGPREGQTYRRQAVFRTGYRLRLPFPRLPAGPGHRWFNSHQLGGDPDLIDFQAWARTMLRRGLVHPRDADAWRAA 120
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BLAST of mRNA_Ecto-sp13_S_contig18753.5903.1 vs. uniprot
Match: D8LFQ2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFQ2_ECTSI)

HSP 1 Score: 206 bits (525), Expect = 1.720e-54
Identity = 97/114 (85.09%), Postives = 100/114 (87.72%), Query Frame = 3 
Query:  354 KKNCYAADTA-PRPEYRWCSAE*VDQPAPLPDRSNGWRYLGPREGETYGRQAVFEAMNRLRLPFPRLSPGPGHRWFNSHPIGGDPDLPDFRAWARTMLLRRLVHPRDADAWRAA 692
            K+N YAA TA PRPEYRWC AE VDQ APLPDRSNGWRYLGPREGETY RQAVF A  RLRLPFPRL PGPGHRWFNSHP+GGDPDLPDF+AWARTML RRLVH  DADAWRAA
Sbjct:    8 KRNYYAAATALPRPEYRWCYAEQVDQAAPLPDRSNGWRYLGPREGETYRRQAVFGAGFRLRLPFPRLCPGPGHRWFNSHPLGGDPDLPDFQAWARTMLRRRLVHRDDADAWRAA 121
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BLAST of mRNA_Ecto-sp13_S_contig18753.5903.1 vs. uniprot
Match: A0A6H5KTC4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTC4_9PHAE)

HSP 1 Score: 200 bits (508), Expect = 2.740e-52
Identity = 90/113 (79.65%), Postives = 96/113 (84.96%), Query Frame = 3 
Query:  354 KKNCYAADTAPRPEYRWCSAE*VDQPAPLPDRSNGWRYLGPREGETYGRQAVFEAMNRLRLPFPRLSPGPGHRWFNSHPIGGDPDLPDFRAWARTMLLRRLVHPRDADAWRAA 692
            K++ YAA TA RPEYRWC  E VD+  P+  RSNGWRYLGPREGETY RQAVF A  RL LPFPRL PGPGHRWFNSHP+GGDPDLPDF+AWARTML RRLVHPRDADAWRAA
Sbjct:    7 KRHYYAAATARRPEYRWCGVEQVDEAVPMSTRSNGWRYLGPREGETYRRQAVFGAGFRLHLPFPRLPPGPGHRWFNSHPLGGDPDLPDFQAWARTMLRRRLVHPRDADAWRAA 119
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BLAST of mRNA_Ecto-sp13_S_contig18753.5903.1 vs. uniprot
Match: A0A6H5L8I4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8I4_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 2.510e-33
Identity = 69/91 (75.82%), Postives = 71/91 (78.02%), Query Frame = 3 
Query:  420 VDQPAPLPDRSNGWRYLGPREGETYGRQAVFEAMNRLRLPFPRLSPGPGHRWFNSHPIGGDPDLPDFRAWARTMLLRRLVHPRDADAWRAA 692
            VDQ APL  RSNGWRY G REGETY RQAVF A  RLRLP  R+ P PGHRWFNSHP GGDPDL DF+A A TML R LVHPRDADAWR A
Sbjct:    8 VDQAAPLACRSNGWRYRGEREGETYRRQAVFGAGYRLRLPLHRVYPVPGHRWFNSHPFGGDPDLRDFQALAGTMLCRGLVHPRDADAWRVA 98
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BLAST of mRNA_Ecto-sp13_S_contig18753.5903.1 vs. uniprot
Match: D7FQN9_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D7FQN9_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 3.820e-32
Identity = 66/99 (66.67%), Postives = 76/99 (76.77%), Query Frame = 3 
Query:  396 YRWCSAE*VDQPAPLPDRSNGWRYLGPREGETYGRQAVFEAMNRLRLPFPRLSPGPGHRWFNSHPIGGDPDLPDFRAWARTMLLRRLVHPRDADAWRAA 692
            YRWC  E VDQ APL  RSNGWRYLGP  G TY RQAVF    R+R+ FP  SPGPG+RWFNSHP+GGDP+L +F+ WART+L   +VHPRDA+AWR A
Sbjct:   17 YRWCYVEQVDQAAPLAGRSNGWRYLGPG-GITYRRQAVFGTGFRVRISFPS-SPGPGYRWFNSHPLGGDPNLYNFQTWARTVLQGGMVHPRDAEAWRTA 113
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BLAST of mRNA_Ecto-sp13_S_contig18753.5903.1 vs. uniprot
Match: A0A6H5K6B4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6B4_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 1.840e-31
Identity = 63/99 (63.64%), Postives = 74/99 (74.75%), Query Frame = 3 
Query:  396 YRWCSAE*VDQPAPLPDRSNGWRYLGPREGETYGRQAVFEAMNRLRLPFPRLSPGPGHRWFNSHPIGGDPDLPDFRAWARTMLLRRLVHPRDADAWRAA 692
            YRWC  E VDQ  PL  RSNGWRY+ P  G TY RQAVF    R+R+ F   SPGPGHRWFNSHP+GGDP+L +F+ WART+L R +VHPR+A+AWR A
Sbjct:   18 YRWCYMEQVDQDEPLAGRSNGWRYMEPG-GVTYRRQAVFGTGFRIRISF-ASSPGPGHRWFNSHPLGGDPNLYNFQTWARTVLQRGMVHPREAEAWRTA 114
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BLAST of mRNA_Ecto-sp13_S_contig18753.5903.1 vs. uniprot
Match: A0A6H5JCS9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCS9_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 3.440e-31
Identity = 64/99 (64.65%), Postives = 73/99 (73.74%), Query Frame = 3 
Query:  396 YRWCSAE*VDQPAPLPDRSNGWRYLGPREGETYGRQAVFEAMNRLRLPFPRLSPGPGHRWFNSHPIGGDPDLPDFRAWARTMLLRRLVHPRDADAWRAA 692
            YRWC  E VDQ  PL +RSNGWRY GPR G TY RQAVF    R+R+ FP  S GPGH WFNSHP+GGDP+L  F+ WAR +L R +VHPRDA+AWR A
Sbjct:   17 YRWCYVEQVDQAEPLANRSNGWRYRGPR-GVTYRRQAVFGTGYRIRISFPS-SAGPGHTWFNSHPVGGDPNLYSFQTWARMVLERGMVHPRDAEAWRTA 113
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BLAST of mRNA_Ecto-sp13_S_contig18753.5903.1 vs. uniprot
Match: A0A6H5JU52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU52_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 6.850e-31
Identity = 64/120 (53.33%), Postives = 77/120 (64.17%), Query Frame = 3 
Query:  396 YRWCSAE*VDQPAPLPDRSNGWRYLGPREGETYGRQAVFEAMN---------------------RLRLPFPRLSPGPGHRWFNSHPIGGDPDLPDFRAWARTMLLRRLVHPRDADAWRAA 692
            YRWC  E VDQ APL  RSNGWR++GP EG TY RQAVF                         R+R+ FP  SPGPG+RWF+SHP+GGDP+L +F+ W RT+L R +VHPRDA+AWR A
Sbjct:   17 YRWCYVEQVDQAAPLAGRSNGWRHMGP-EGITYRRQAVFGTGXXXXXXXXXXXXXXXXXXXXXFRVRISFPS-SPGPGYRWFHSHPLGGDPNLYNFQTWTRTVLQRGMVHPRDAEAWRTA 134
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BLAST of mRNA_Ecto-sp13_S_contig18753.5903.1 vs. uniprot
Match: A0A6H5JDB7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDB7_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 1.300e-30
Identity = 63/104 (60.58%), Postives = 77/104 (74.04%), Query Frame = 3 
Query:  363 CYAADTAPRPEYRWCSAE*VDQPAPLPDRSNGWRYLGPREGETYGRQAVFEAMNRLRLPFPRLSPGPGHRWFNSHPIGGDPDLPDFRAWARTMLLRRLVHPRDA 674
            C A+ ++    YRWC  E VDQ  PL +RSNGWRY+GPR G TY RQAVF    R+R+ FP  S GPGH+WFNSHP+GGDP+L +F+ WART+L R +VHPRDA
Sbjct:   15 CAASSSSYATSYRWCYVEQVDQAEPLANRSNGWRYMGPR-GVTYRRQAVFGTGYRIRISFPS-SAGPGHQWFNSHPLGGDPNLYNFQTWARTVLRRGMVHPRDA 116
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BLAST of mRNA_Ecto-sp13_S_contig18753.5903.1 vs. uniprot
Match: A0A6H5KUG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUG2_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 1.380e-29
Identity = 56/70 (80.00%), Postives = 57/70 (81.43%), Query Frame = 3 
Query:  366 YAADTAPRPEYRWCSAE*VDQPAPLPDRSNGWRYLGPREGETYGRQAVFEAMNRLRLPFPRLSPGPGHRW 575
            YA  TA RPEYRWC AE VDQ AP+PDRSNGWRYLGPREGETY RQA F A  RLRLPFPRL  GPGHRW
Sbjct:   11 YAGGTARRPEYRWCYAEQVDQAAPMPDRSNGWRYLGPREGETYRRQAGFGAGFRLRLPFPRLPVGPGHRW 80
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18753.5903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KE84_9PHAE1.090e-5781.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFQ2_ECTSI1.720e-5485.09Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5KTC4_9PHAE2.740e-5279.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L8I4_9PHAE2.510e-3375.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQN9_ECTSI3.820e-3266.67Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2... [more]
A0A6H5K6B4_9PHAE1.840e-3163.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCS9_9PHAE3.440e-3164.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU52_9PHAE6.850e-3153.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JDB7_9PHAE1.300e-3060.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUG2_9PHAE1.380e-2980.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18753contigEcto-sp13_S_contig18753:2..1374 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score116.3
Seed ortholog evalue7.1e-24
Seed eggNOG ortholog2880.D8LFQ2
Model size1373
Hectar predicted targeting categoryother localisation
Exons1
EggNOG OGs2E3IK@1,2SAKM@2759
Cds size261
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462960.154892-UTR-Ecto-sp13_S_contig18753:1..5191681462960.154892-UTR-Ecto-sp13_S_contig18753:1..519Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18753 2..519 +
1681462960.1787138-UTR-Ecto-sp13_S_contig18753:780..13741681462960.1787138-UTR-Ecto-sp13_S_contig18753:780..1374Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18753 781..1374 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462960.1679828-CDS-Ecto-sp13_S_contig18753:519..7801681462960.1679828-CDS-Ecto-sp13_S_contig18753:519..780Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18753 520..780 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18753.5903.1prot_Ecto-sp13_S_contig18753.5903.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18753 520..780 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18753.5903.1

>prot_Ecto-sp13_S_contig18753.5903.1 ID=prot_Ecto-sp13_S_contig18753.5903.1|Name=mRNA_Ecto-sp13_S_contig18753.5903.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=87bp
MNRLRLPFPRLSPGPGHRWFNSHPIGGDPDLPDFRAWARTMLLRRLVHPR
DADAWRAAEKGIHMWHAVTQLNGKKNCPRNFKIAID*
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mRNA from alignment at Ecto-sp13_S_contig18753:2..1374+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18753.5903.1 ID=mRNA_Ecto-sp13_S_contig18753.5903.1|Name=mRNA_Ecto-sp13_S_contig18753.5903.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1373bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18753:2..1374+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTGTCTCCCGCCACTACTACATTAATGACGCGCACGACGATTGATCCCG
CAGCCGACGGTAGACAGACAGAAGAAGAGACAAAGGGATCCACCATGCAT
CCCCCAACACACACGCGTGGCAGATCTAACACCTCATCATCATCTGTCAG
AGCCGGCACGGAAACACAACATGTATATTTGAGCCACCTCCTTCAAAATG
TCCGTGAAACAGTGGAAGCGATCCTTCCCGCCCCCGCCGTCACAACCACC
ACCAACCCAGGGATCTTTCGCCGTGGTTGACGATTCGTCCACAATCGCCG
ACTTATTTTGTTAGCCTATTATACAAATAAATAAATGCTCCGACGACACT
TCAAAAAAAAATTGCTACGCCGCCGACACGGCTCCGCGGCCCGAGTACCG
GTGGTGCTCCGCCGAGTAGGTCGACCAGCCCGCTCCCCTGCCCGACAGGA
GTAACGGCTGGCGCTACCTGGGCCCCCGAGAGGGAGAGACCTACGGGCGC
CAGGCGGTCTTCGAGGCCATGAACCGCCTTCGCCTGCCGTTCCCCCGCCT
CTCCCCGGGGCCCGGACACCGCTGGTTCAACTCGCACCCCATCGGCGGGG
ATCCCGACCTTCCGGACTTCCGGGCCTGGGCAAGAACGATGCTGCTCAGG
CGCCTGGTGCACCCGCGCGACGCCGACGCCTGGCGGGCGGCCGAGAAAGG
GATTCATATGTGGCACGCAGTTACACAGCTGAATGGCAAAAAAAACTGCC
CGCGGAATTTCAAAATAGCCATAGACTAGCCAGCCACCCCCCGAAGATGG
TGGACGGGCGACGTCATCCACGATCGGTCGGGAGTGGAGATGGCTGATGA
CTTGTTGCCGCCACTTTGAACACTCAATAGGCAAGAGATAGAGAGAGAGA
GATCCGTCAATCGACCCGCGTGCAATCTTGTTGTGATATCCTTCGCGGAG
AACCCTATAATAGCTGCCGCTCGGCACCCTCCGCGCGACAAGGAAGGCTA
GATTGGGATCGGGATCTTGTTTGGCATCATCACCACAGCCCACCAAAGGA
CTGCTGTACTGCTGTACCTACATGCACGCAGGCTGAGCAAAAACCCGTGT
GTTGTTATTGGCATGGCCAACGGGTGCGACTGCACATCGAACCCTACTGC
TAACTTCTGCGTGAAGCGGGACAGGGAAAAGCACCCAGAGAGAATAAGCT
CAAAGATAAAGGTACACATCGCCTCTTCCTATTTTTCACAGTTACATTAC
AATGTAGTGGGCGAACTCTGCATAACCGATCCCGGTTGCCTACCCGAATG
TTCCGGGTCCTTCCGGCCGGCATTCCTCTGCGCGTCACACGCATGTGGAC
GTTCCATGCATCCATAAGCACCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18753:2..1374+

>mRNA_Ecto-sp13_S_contig18753.5903.1 ID=mRNA_Ecto-sp13_S_contig18753.5903.1|Name=mRNA_Ecto-sp13_S_contig18753.5903.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=261bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18753:2..1374+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACCGCCTTCGCCTGCCGTTCCCCCGCCTCTCCCCGGGGCCCGGACA
CCGCTGGTTCAACTCGCACCCCATCGGCGGGGATCCCGACCTTCCGGACT
TCCGGGCCTGGGCAAGAACGATGCTGCTCAGGCGCCTGGTGCACCCGCGC
GACGCCGACGCCTGGCGGGCGGCCGAGAAAGGGATTCATATGTGGCACGC
AGTTACACAGCTGAATGGCAAAAAAAACTGCCCGCGGAATTTCAAAATAG
CCATAGACTAG
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