mRNA_Ecto-sp13_S_contig1874.5900.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1874.5900.1
Unique NamemRNA_Ecto-sp13_S_contig1874.5900.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1874.5900.1 vs. uniprot
Match: D7FNM6_ECTSI (ABC transporter-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNM6_ECTSI)

HSP 1 Score: 341 bits (874), Expect = 1.740e-115
Identity = 175/180 (97.22%), Postives = 179/180 (99.44%), Query Frame = 1
Query:    1 MPTGEAEAGGSTPTRIRESVTRLGPNFVKIGQALASRPDLVGEAIAGELLLLQDAMPLFSNEVARSFIHEELGGYPEDIFEAMGDSPVAAASLGQVYKAQIDGRPVAVKVQRPDLLEAVGLDFYVARRVAEAITRLSRSSSFFGGRLVVRSDLVAAVDEYGSRLFEELDYRKEAQNMMQF 540
            +PTGEAEAGG+TPTRIRESVTRLGPNFVKIGQALASRPDLVGEAIAGELLLLQDAMPLFSNEVAR FIHEELGGYPEDIFEAMGD+PVAAASLGQVYKAQIDGRPVAVKVQRPDLLEAVGLDFYVARRVAEAITRLSRSSSFFGGRLVVRSDLVAAVDEYGSRLFEELDYRKEAQNM+QF
Sbjct:   86 VPTGEAEAGGNTPTRIRESVTRLGPNFVKIGQALASRPDLVGEAIAGELLLLQDAMPLFSNEVARRFIHEELGGYPEDIFEAMGDTPVAAASLGQVYKAQIDGRPVAVKVQRPDLLEAVGLDFYVARRVAEAITRLSRSSSFFGGRLVVRSDLVAAVDEYGSRLFEELDYRKEAQNMVQF 265          
BLAST of mRNA_Ecto-sp13_S_contig1874.5900.1 vs. uniprot
Match: A0A6H5L3N2_9PHAE (ABC1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3N2_9PHAE)

HSP 1 Score: 314 bits (805), Expect = 3.830e-103
Identity = 162/176 (92.05%), Postives = 170/176 (96.59%), Query Frame = 1
Query:   13 EAEAGGSTPTRIRESVTRLGPNFVKIGQALASRPDLVGEAIAGELLLLQDAMPLFSNEVARSFIHEELGGYPEDIFEAMGDSPVAAASLGQVYKAQIDGRPVAVKVQRPDLLEAVGLDFYVARRVAEAITRLSRSSSFFGGRLVVRSDLVAAVDEYGSRLFEELDYRKEAQNMMQF 540
            +A+ G   PTRIRESVTRLGPNFVKIGQALASRPDLVGEAIAGELLLLQDAMPLFSNEVAR FI+EELG YPEDIFE+MGD+PVAAASLGQVYKAQI+GRPVAVKVQRPDLLEAVGLDFYVARRVA+AITRLSRSSSFFGGRLVVRSDLVAAVDEYGSRLFEELDYRKEAQNM+QF
Sbjct:   79 DADTGIRMPTRIRESVTRLGPNFVKIGQALASRPDLVGEAIAGELLLLQDAMPLFSNEVARRFIYEELGDYPEDIFESMGDTPVAAASLGQVYKAQINGRPVAVKVQRPDLLEAVGLDFYVARRVADAITRLSRSSSFFGGRLVVRSDLVAAVDEYGSRLFEELDYRKEAQNMVQF 254          
BLAST of mRNA_Ecto-sp13_S_contig1874.5900.1 vs. uniprot
Match: A0A835YQ71_9STRA (ABC1 family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ71_9STRA)

HSP 1 Score: 180 bits (457), Expect = 4.960e-51
Identity = 99/180 (55.00%), Postives = 124/180 (68.89%), Query Frame = 1
Query:    4 PTGEAEAGGSTPTRIRESVTRLGPNFVKIGQALASRPDLVGEAIAGELLLLQDAMPLFSNEVARSFIHEELGGYPEDIFEAMGDSPVAAASLGQVYKAQIDG-RPVAVKVQRPDLLEAVGLDFYVARRVAEAITRLSRSSSFFGGRLVVRSDLVAAVDEYGSRLFEELDYRKEAQNMMQF 540
            P   A       T +RE++TRLGP F+K+GQAL+SRPDLV E    EL LLQDA+P F N VAR+ + EELG YPE +F+ +   PVAAASLGQVYKA+I G   VAVKVQRP L++ + LD ++ R VA A+  ++R     G R   R+DLV+ VDEY SRLFEELDY  EA+NM +F
Sbjct:   85 PRARASLANVRATELREAITRLGPAFIKLGQALSSRPDLVDEQTMAELSLLQDALPFFPNGVARALVREELGAYPERLFDEISAEPVAAASLGQVYKAKIGGGASVAVKVQRPGLVDRIALDCHILRTVAGALAGIARLP---GVRF--RTDLVSVVDEYASRLFEELDYETEARNMRKF 259          
BLAST of mRNA_Ecto-sp13_S_contig1874.5900.1 vs. uniprot
Match: A9BL31_HEMAN (Kin(ABC1) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A9BL31_HEMAN)

HSP 1 Score: 171 bits (434), Expect = 2.700e-46
Identity = 90/166 (54.22%), Postives = 115/166 (69.28%), Query Frame = 1
Query:   43 RIRESVTRLGPNFVKIGQALASRPDLVGEAIAGELLLLQDAMPLFSNEVARSFIHEELGGYPEDIFEAMGDSPVAAASLGQVYKAQIDGRPVAVKVQRPDLLEAVGLDFYVARRVAEAITRLSRSSSFFGGRLVVRSDLVAAVDEYGSRLFEELDYRKEAQNMMQF 540
            ++RE++ +L P F+K+ QALASRPDL+ E ++ EL  LQD MP FS E A  FI +ELG  PE IF  +   PVAAASLGQVYKA +DG  VAVKVQRP LLE + LD +V R +A+   ++ +          VR+DLVA +DEY  RLFEELDYRKE+ NM++F
Sbjct:  307 QLRETIAKLSPAFIKLAQALASRPDLIDERLSKELQRLQDDMPFFSKEEAFDFIKKELGANPEKIFSDISSEPVAAASLGQVYKATLDGIQVAVKVQRPGLLELIALDIFVIRFLADMTQKVFK----------VRTDLVAIIDEYAERLFEELDYRKESSNMIKF 462          
BLAST of mRNA_Ecto-sp13_S_contig1874.5900.1 vs. uniprot
Match: A0A6T6CQ29_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A6T6CQ29_9RHOD)

HSP 1 Score: 168 bits (426), Expect = 1.270e-45
Identity = 86/165 (52.12%), Postives = 112/165 (67.88%), Query Frame = 1
Query:   46 IRESVTRLGPNFVKIGQALASRPDLVGEAIAGELLLLQDAMPLFSNEVARSFIHEELGGYPEDIFEAMGDSPVAAASLGQVYKAQIDGRPVAVKVQRPDLLEAVGLDFYVARRVAEAITRLSRSSSFFGGRLVVRSDLVAAVDEYGSRLFEELDYRKEAQNMMQF 540
             RE++TRLGP F+K+GQ LA+RPD+VG+    ELL LQD MP F N+ A  FI EELG  P  IF+ + + PVAAASLGQVYK  +DG  VA+KVQRP ++E + LDF+V R++   + RL  S          R+ +V A+DEY S LFEELDYR E +N+ +F
Sbjct:   76 FREAITRLGPAFIKLGQTLATRPDIVGDISTRELLRLQDDMPFFPNKDAFVFIREELGASPHHIFDEISEQPVAAASLGQVYKGSLDGVQVAIKVQRPGIVEQIALDFHVVRQIMLLVNRLIES----------RTGIVGALDEYASSLFEELDYRNEGRNIAKF 230          
BLAST of mRNA_Ecto-sp13_S_contig1874.5900.1 vs. uniprot
Match: A0A5J4YTY6_PORPP (Putative aarF domain-containing protein kinase, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YTY6_PORPP)

HSP 1 Score: 170 bits (430), Expect = 1.280e-45
Identity = 88/164 (53.66%), Postives = 116/164 (70.73%), Query Frame = 1
Query:   49 RESVTRLGPNFVKIGQALASRPDLVGEAIAGELLLLQDAMPLFSNEVARSFIHEELGGYPEDIFEAMGDSPVAAASLGQVYKAQIDGRPVAVKVQRPDLLEAVGLDFYVARRVAEAITRLSRSSSFFGGRLVVRSDLVAAVDEYGSRLFEELDYRKEAQNMMQF 540
            R+++TRLGP F+K+GQA++SRPD+VG  ++ EL  LQD MP FSNE A  FI  E+G +P  +FE++   PVAAAS+GQVYKA++DG  VAVK+QRP ++E V LDF+V R VAE  T      S F    +V  DL   VD+Y SRLFEELDY +E +N+ +F
Sbjct:  411 RQAITRLGPAFIKLGQAISSRPDVVGSRMSRELQRLQDDMPFFSNEEAFEFIRREVGAHPRRLFESISQQPVAAASIGQVYKAKLDGIDVAVKIQRPGIVEVVALDFHVIRNVAEFAT------SVFPFSTLVPPDLCDIVDDYASRLFEELDYVQEGRNVERF 568          
BLAST of mRNA_Ecto-sp13_S_contig1874.5900.1 vs. uniprot
Match: M2XY29_GALSU (AarF domain-containing kinase n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XY29_GALSU)

HSP 1 Score: 168 bits (425), Expect = 4.890e-45
Identity = 86/167 (51.50%), Postives = 117/167 (70.06%), Query Frame = 1
Query:   40 TRIRESVTRLGPNFVKIGQALASRPDLVGEAIAGELLLLQDAMPLFSNEVARSFIHEELGGYPEDIFEAMGDSPVAAASLGQVYKAQIDGRPVAVKVQRPDLLEAVGLDFYVARRVAEAITRLSRSSSFFGGRLVVRSDLVAAVDEYGSRLFEELDYRKEAQNMMQF 540
            +++RE +TRLGP F+K GQ LASRPD+VG     EL  LQD++P FS E A  FI EELG  P+ IF+ +   P AAASLGQVYKA++D   VAVKVQRPD+ E++ LD Y+ R +A  +T+L +S          ++D V AVDE+G+RL+EE+DY+ E+ NM++F
Sbjct:  294 SKLREMLTRLGPAFIKFGQTLASRPDIVGHYGVVELQKLQDSLPFFSTERAFEFITEELGATPDQIFDFISKEPAAAASLGQVYKARLDNVDVAVKVQRPDIAESIALDSYILRGLAFTLTKLLKS----------KTDFVMAVDEFGTRLYEEIDYKGESSNMIRF 450          
BLAST of mRNA_Ecto-sp13_S_contig1874.5900.1 vs. uniprot
Match: A0A7J7IQA4_9RHOD (Protein kinase domain-containing protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IQA4_9RHOD)

HSP 1 Score: 167 bits (422), Expect = 1.510e-44
Identity = 87/165 (52.73%), Postives = 115/165 (69.70%), Query Frame = 1
Query:   46 IRESVTRLGPNFVKIGQALASRPDLVGEAIAGELLLLQDAMPLFSNEVARSFIHEELGGYPEDIFEAMGDSPVAAASLGQVYKAQIDGRPVAVKVQRPDLLEAVGLDFYVARRVAEAITRLSRSSSFFGGRLVVRSDLVAAVDEYGSRLFEELDYRKEAQNMMQF 540
            +R+++ RLGP FVK+GQALA+RPD++GEA A EL  LQD MP FSN+ A  FI  ELG  P  +F+++ ++PVA+ASLGQVYKA +DG  +AVKVQRP ++E + LDF+V R + E          +       R+DLV A+DEY SRLFEE DY  EA+NM +F
Sbjct:  249 LRQTLERLGPAFVKLGQALATRPDIIGEAAARELQRLQDDMPHFSNDEAFRFIRTELGAPPSRVFDSITENPVASASLGQVYKASLDGVDLAVKVQRPGIVERIALDFFVVRMLGEL---------WMHSPWAPRTDLVEAIDEYASRLFEETDYGHEAENMRRF 404          
BLAST of mRNA_Ecto-sp13_S_contig1874.5900.1 vs. uniprot
Match: J7G6I5_9CRYP (ABC1 family protein n=1 Tax=Chroomonas mesostigmatica CCMP1168 TaxID=1195612 RepID=J7G6I5_9CRYP)

HSP 1 Score: 166 bits (421), Expect = 1.660e-44
Identity = 86/165 (52.12%), Postives = 111/165 (67.27%), Query Frame = 1
Query:   46 IRESVTRLGPNFVKIGQALASRPDLVGEAIAGELLLLQDAMPLFSNEVARSFIHEELGGYPEDIFEAMGDSPVAAASLGQVYKAQIDGRPVAVKVQRPDLLEAVGLDFYVARRVAEAITRLSRSSSFFGGRLVVRSDLVAAVDEYGSRLFEELDYRKEAQNMMQF 540
            +RE++ +L P F+K+ QAL +RPD+V E I+ EL  LQD MP FSNE A  FI +ELG  P  IF  M + PVAAASLGQVYKA +DG  VA+KVQRP L E + LD  + R ++  + +  +          +R+DLVA VDEY  RLFEELDYRKE+ NM++F
Sbjct:  314 LRETIAKLSPAFIKLAQALVARPDIVSERISNELQRLQDDMPFFSNEKAFDFIKKELGASPHQIFSEMSNEPVAAASLGQVYKANLDGMQVAIKVQRPGLSEMIALDILIIRFLSFILQKSFK----------IRTDLVAIVDEYAQRLFEELDYRKESSNMIKF 468          
BLAST of mRNA_Ecto-sp13_S_contig1874.5900.1 vs. uniprot
Match: A0A6P0YRI9_9CYAN (AarF/ABC1/UbiB kinase family protein n=1 Tax=Merismopedia sp. SIO2A8 TaxID=2607779 RepID=A0A6P0YRI9_9CYAN)

HSP 1 Score: 163 bits (413), Expect = 5.990e-44
Identity = 87/167 (52.10%), Postives = 115/167 (68.86%), Query Frame = 1
Query:   43 RIRESVTRLGPNFVKIGQALASRPDLVGEAIAGELLLLQDAMPLFSNEVARSFIHEELGGYPEDIFEAMGDSPVAAASLGQVYKAQID-GRPVAVKVQRPDLLEAVGLDFYVARRVAEAITRLSRSSSFFGGRLVVRSDLVAAVDEYGSRLFEELDYRKEAQNMMQF 540
            +IRE +TRLGP ++K+GQAL++RPDLV  A   EL LLQD +P FSN++A  FI EELG  P+ I+E +   P+AAASLGQVYK ++  G  VAVKVQRPDL E + LD ++ R++A  I R  +          +RSDLVA +DE+G R+FEE+DY  E QN  +F
Sbjct:   75 QIRELITRLGPAYIKVGQALSTRPDLVPSAYLEELSLLQDQIPPFSNDLAFRFIEEELGHPPDQIYEELSPQPIAAASLGQVYKGKLKTGEVVAVKVQRPDLEEGIALDIHILRQLAALIQRSVKR---------IRSDLVAIMDEFGERIFEEMDYVNEGQNAEKF 232          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1874.5900.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNM6_ECTSI1.740e-11597.22ABC transporter-like n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5L3N2_9PHAE3.830e-10392.05ABC1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A835YQ71_9STRA4.960e-5155.00ABC1 family-domain-containing protein n=1 Tax=Trib... [more]
A9BL31_HEMAN2.700e-4654.22Kin(ABC1) n=2 Tax=Hemiselmis andersenii TaxID=4649... [more]
A0A6T6CQ29_9RHOD1.270e-4552.12Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A5J4YTY6_PORPP1.280e-4553.66Putative aarF domain-containing protein kinase, ch... [more]
M2XY29_GALSU4.890e-4551.50AarF domain-containing kinase n=1 Tax=Galdieria su... [more]
A0A7J7IQA4_9RHOD1.510e-4452.73Protein kinase domain-containing protein n=1 Tax=C... [more]
J7G6I5_9CRYP1.660e-4452.12ABC1 family protein n=1 Tax=Chroomonas mesostigmat... [more]
A0A6P0YRI9_9CYAN5.990e-4452.10AarF/ABC1/UbiB kinase family protein n=1 Tax=Meris... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1874contigEcto-sp13_S_contig1874:1256..3169 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score342.8
Seed ortholog evalue9.6e-92
Seed eggNOG ortholog2880.D7FNM6
Model size541
KEGG koko:K08869
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.regulation of tocopherol cyclase activity
EggNOG OGsCOG0661@1,KOG1235@2759
Ec32 ortholog descriptionABC transporter-like
Ec32 orthologEc-01_004920.1
Cds size540
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462959.9507306-CDS-Ecto-sp13_S_contig1874:1255..14651681462959.9507306-CDS-Ecto-sp13_S_contig1874:1255..1465Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1874 1256..1465 +
1681462959.9608436-CDS-Ecto-sp13_S_contig1874:1942..20171681462959.9608436-CDS-Ecto-sp13_S_contig1874:1942..2017Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1874 1943..2017 +
1681462959.9692204-CDS-Ecto-sp13_S_contig1874:2296..25301681462959.9692204-CDS-Ecto-sp13_S_contig1874:2296..2530Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1874 2297..2530 +
1681462959.9778235-CDS-Ecto-sp13_S_contig1874:3148..31691681462959.9778235-CDS-Ecto-sp13_S_contig1874:3148..3169Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1874 3149..3169 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1874.5900.1prot_Ecto-sp13_S_contig1874.5900.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1874 1256..3169 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1874.5900.1

>prot_Ecto-sp13_S_contig1874.5900.1 ID=prot_Ecto-sp13_S_contig1874.5900.1|Name=mRNA_Ecto-sp13_S_contig1874.5900.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=180bp
MPTGEAEAGGSTPTRIRESVTRLGPNFVKIGQALASRPDLVGEAIAGELL
LLQDAMPLFSNEVARSFIHEELGGYPEDIFEAMGDSPVAAASLGQVYKAQ
IDGRPVAVKVQRPDLLEAVGLDFYVARRVAEAITRLSRSSSFFGGRLVVR
SDLVAAVDEYGSRLFEELDYRKEAQNMMQF
back to top

mRNA from alignment at Ecto-sp13_S_contig1874:1256..3169+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1874.5900.1 ID=mRNA_Ecto-sp13_S_contig1874.5900.1|Name=mRNA_Ecto-sp13_S_contig1874.5900.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1914bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1874:1256..3169+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCACAGGGGAGGCGGAGGCAGGCGGTAGCACGCCCACGCGCATCCG GGAATCGGTGACCCGCCTCGGACCCAACTTCGTCAAGATCGGGCAGGCGC TGGCTTCGAGACCAGACTTGGTGGGAGAGGCTATCGCCGGAGAGCTGTTA CTCCTTCAGGACGCGATGCCGCTGTTTTCCAACGAAGTGGCAAGGAGCTT TATCCACGAGGTGTGTTTTTGGTGTCTTGTTTCCGTCACCGTCAGCACCG TTGTGCCTCGGCAGACAGCTCTCGACAGGTAATTGTCTTTCGGGGCGACA TGACTTGCTACAGGACGCCGTATCGAAGTTTTTGATGGAGGCTACACAAG GAGGGGGGTTCGTGGGCATGTCAACCGCGAGGGTGTGAGCGGGGCGAGGG GGATGTTGCCTGGCGACCGGCGTAAGCTACTCCGTATCGCTCATCGTTTT CGGGGAGTGCAACAAGGATGGCACGGCCTAGTACCTTGAGTTGCTTTTTC AGCAGGGCGTTGAGGTTGCAACACGAAAGTTGTACGGGATGCTGTTGAAC GTGAGTGCAAAAGTTGCTCGGAACCAGCACATTCGTGTCTATTCATCGAC CCAACGGATAAACTACTCGTCGCAATCGCCACCAAGGGCGGGACATGAAT CACCTCTCGAGTTGTGTGCCATGTTGCTGTATGGCAGGAGCTAGGGGGCT ACCCGGAGGACATCTTCGAAGCTATGGGGGACAGCCCTGTGGCGGCTGCG AGCCTGGGTCAGGTGCACATGCACGTCTGTTTTTTTTCCACCACTTAACG TTCTGTGCGGTACGGTCGAGCTCCCTGCAACAACAAGACGCGACAACAGC TTCTGTTGTTAACTCCACCTGCGTGCCTCCAATAGGCAAACAGATACGAC AGCAGGATGCAGAAACACACGCGAAGAGACGGGCATAGATCATAGAGCCC CCTGTTGGCACAGGCACGCGTGCAAACCCCAGACTGACAGATAAAGCCTC CAACTGTGACATTTTCCCTGTTTTCTTCGACGCTTGCACAGGTTTACAAA GCCCAGATAGACGGCAGGCCCGTCGCCGTTAAGGTTCAGCGGCCGGACCT GCTGGAGGCAGTGGGACTCGACTTTTACGTGGCACGCAGGGTTGCGGAGG CCATCACGCGGCTGTCGAGGAGCTCCAGCTTTTTCGGGGGCCGGCTGGTC GTCCGCAGCGACCTAGTGGCCGCGGTGGACGAGTACGGGTCGAGGCTGTT CGAGGAGCTGGACTACAGGAAAGAGGTGCTGAAGCGTTTTTTTACGATTT TGTGCTTACCAACGAACGTCAAGATTTTTGTTCTGTGTTATCGCGAGGGT ATGTATTGCCCCTCTTTGTATTAATCTCTTACTATTATACATTGCATGAA GTTTCGTGGTGAAGGGACTGTCGGAAGTAACAGGGTTGTTTCTTGTTTGT CGTTCAAATCGACATCGCCTTGACCGTCCGGTTTGTGAAATATCGTTGGC CAACGTGCAGCAAGAGGCACAAAGTCGAATTGTAATGTGCTTCGTTAGAC ACCACCGGGCGCGATAAGCAGCTGACCGATGAAAACATGCTAGCCTTACA ACTAGCCACAAGGCACGAACGGACGTGCTCTCAAGACTGCGGGCTCCCCG GACACACCACACCGTGTGTGTTTGTGTTTATGGTGTGTATGTGTGTTTCC AGCACCGACCACGCTACACGCGGCCGGCAGATGAAATCGCGTCAGCCTCA GTGAGACCAACGCAATGCTTGATGCGGAGTCCAGACATGTTTAACACTTT TACCCACTGTTTACAAACGAACAGAAATGTTTGACTCCCTCCGCCCCCCC CCCCCACTCCCCAAATCACATTACCTCTCACACGCTCGTGCAGGCGCAAA ACATGATGCAATTT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1874:1256..3169+

>mRNA_Ecto-sp13_S_contig1874.5900.1 ID=mRNA_Ecto-sp13_S_contig1874.5900.1|Name=mRNA_Ecto-sp13_S_contig1874.5900.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=540bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1874:1256..3169+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCACAGGGGAGGCGGAGGCAGGCGGTAGCACGCCCACGCGCATCCG
GGAATCGGTGACCCGCCTCGGACCCAACTTCGTCAAGATCGGGCAGGCGC
TGGCTTCGAGACCAGACTTGGTGGGAGAGGCTATCGCCGGAGAGCTGTTA
CTCCTTCAGGACGCGATGCCGCTGTTTTCCAACGAAGTGGCAAGGAGCTT
TATCCACGAGGAGCTAGGGGGCTACCCGGAGGACATCTTCGAAGCTATGG
GGGACAGCCCTGTGGCGGCTGCGAGCCTGGGTCAGGTTTACAAAGCCCAG
ATAGACGGCAGGCCCGTCGCCGTTAAGGTTCAGCGGCCGGACCTGCTGGA
GGCAGTGGGACTCGACTTTTACGTGGCACGCAGGGTTGCGGAGGCCATCA
CGCGGCTGTCGAGGAGCTCCAGCTTTTTCGGGGGCCGGCTGGTCGTCCGC
AGCGACCTAGTGGCCGCGGTGGACGAGTACGGGTCGAGGCTGTTCGAGGA
GCTGGACTACAGGAAAGAGGCGCAAAACATGATGCAATTT
back to top