prot_Ecto-sp13_S_contig18739.5899.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig18739.5899.1
Unique Nameprot_Ecto-sp13_S_contig18739.5899.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length391
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18739.5899.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 303..322
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..43
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 323..390
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 90..189
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 190..208
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 15..25
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 44..66
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..14
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 209..302
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 26..43
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 67..89
NoneNo IPR availableTMHMMTMhelixcoord: 303..325

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18739contigEcto-sp13_S_contig18739:1856..3028 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18739.5899.1mRNA_Ecto-sp13_S_contig18739.5899.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig18739 1623..3284 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig18739.5899.1 ID=prot_Ecto-sp13_S_contig18739.5899.1|Name=mRNA_Ecto-sp13_S_contig18739.5899.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=391bp
MSTSASVLTANIADTLQLLLTVVIVPPPSSPPTLSSDAALVLLSPSSSSR
SNSSSSSSSSSSMDVTATAAAAAAAAATAAAAAAAAAAFDAPPQRAFFEF
RGDPALPVVFRRLLLFPAPPLRHRVAVGRAAGLPPSPSELSDSDPASPRA
SASSSSSSSGHGPRPVTLAKVSWSNPSSSSWVTKRPFRRGLLSASFFRQS
YLIFFLQMRRPRLAWNLATRAARSSRVYAPTRYGAPPFPRRPAPPPYRRL
STRPSSAARATVSTPPTCLRRGGRAPAVPDPRPSPAASALALPPPPPDLL
RPGVAVVGAAAAVAAAALAALGRMLRDRVLPRVRVGCCCCCGGGVGSHCL
FAEQDSLSSKDGGRVRLLGPMAPPPPPPPRLNGDGGAGRG*
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