mRNA_Ecto-sp13_S_contig18739.5899.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig18739.5899.1 vs. uniprot
Match: A0A6H5KKA9_9PHAE (CCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKA9_9PHAE) HSP 1 Score: 565 bits (1455), Expect = 1.890e-194 Identity = 460/553 (83.18%), Postives = 471/553 (85.17%), Query Frame = -3
Query: 11 PMNLMSNENITWTVERERGISFDLTALTDPDLKYQGINGGGGG---MPLTPDAGAALLDVMRREVKLETESGVKESTFGHPFGGQCRPQXXXXXXXXXXXXXXXXXXAMGPNKRTLPPSFELRESCSAKRQWDPTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGALPPRRRHVGGVDTVALAAELGLVDSRRYGGGAGRRGKGGAPYRVGAYTLEERAALVARFHAKRGRRIWRKKIKYDCRKKLADKRPRLKGRFVTQEELEGLDQETLAKVTGLGPWPEXXXXXXXXXXXXXXXXXXXXXXXXGSPAARPTATRCRSGGAGKSSRRRNTTGKAGSPRNSKKARCGGASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDSVGGEEGGGTMTTVSSSCKVSAMFAVKTEADVDMPDHQDHQTTDLIEPQQLVVEEEEEDYENDNAVVDTEDYEPTDPVFGFMIDDILSSNFNVVPSLDSSSAAGVAVN 1660
PMNLMSNENITWTVERERGISFDLTALTDPDL++QG++GG MPLTPDAG ALLDV RREVKLE ESGVKESTFGHPFGGQ RPQ XXXXXXX XXXXXXX MGPNKRTLPPSFELRESCSAKRQWDPTP XXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXX PPRRRHV GVDTVALAAELGLVDSRRYGGG GRRGKGGAPYRVGAYTLEERAALVARFHAKRGRRIWRKKIKYDCRKKLADKRPRLKGRFVTQEELEGLDQETLAKVTGLGPWPEXXXXXXXXXXXXXXXXXXXXXXXX SSRRRN+TGKAGSPR +KKARCGG S XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EDS+G EEG GTM VSSSCKVSAMFAVKTEAD+DMPDHQDHQ DLIEPQQLVVEEEEEDYE+D+A +D EDYEPTDPVFGFMIDDILSSNFNVVPS DSSSAAGVAVN
Sbjct: 25 PMNLMSNENITWTVERERGISFDLTALTDPDLRHQGVSGGXXXXXXMPLTPDAGGALLDVTRREVKLEAESGVKESTFGHPFGGQFRPQPXXXXXXXFSXXXXXXXAPMGPNKRTLPPSFELRESCSAKRQWDPTPPPQQQPSRTLGRTXXXXXXXXXXXXXXXXXXXXXXXXXXGRSXXXXXXXXXXXXXXXXXXXXXXXXXP--PPRRRHVRGVDTVALAAELGLVDSRRYGGGGGRRGKGGAPYRVGAYTLEERAALVARFHAKRGRRIWRKKIKYDCRKKLADKRPRLKGRFVTQEELEGLDQETLAKVTGLGPWPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSRRRNSTGKAGSPRKAKKARCGGVSKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISTSAAS-----EDSLGDEEGRGTMKRVSSSCKVSAMFAVKTEADIDMPDHQDHQAPDLIEPQQLVVEEEEEDYEHDDAFIDAEDYEPTDPVFGFMIDDILSSNFNVVPSRDSSSAAGVAVN 570
BLAST of mRNA_Ecto-sp13_S_contig18739.5899.1 vs. uniprot
Match: A0A7S2XZW4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZW4_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 2.320e-17 Identity = 43/60 (71.67%), Postives = 51/60 (85.00%), Query Frame = -3
Query: 749 RVGAYTLEERAALVARFHAKRGRRIWRKKIKYDCRKKLADKRPRLKGRFVTQEELEGLDQ 928
R+G YT EER A +ARFHAKR RRIWRK+IKYDCRKKLAD RPR+KGRFV ++E+E D+
Sbjct: 101 RIGIYTCEERKARIARFHAKRKRRIWRKRIKYDCRKKLADSRPRIKGRFVRRQEVENDDE 160
BLAST of mRNA_Ecto-sp13_S_contig18739.5899.1 vs. uniprot
Match: A0A7R9UG97_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UG97_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 9.080e-17 Identity = 43/74 (58.11%), Postives = 56/74 (75.68%), Query Frame = -3
Query: 719 GAPYRVGAYTLEERAALVARFHAKRGRRIWRKKIKYDCRKKLADKRPRLKGRFVTQEELEGLDQETLAKVTGLG 940
G P +G YT E+R A +ARFHAKR +R+WRK+IKYDCRKKLAD RPR+KGRFV +E+++ L ++K G G
Sbjct: 83 GGPKLIGIYTPEQRKARIARFHAKRAKRVWRKRIKYDCRKKLADSRPRIKGRFVRREDMDVL----MSKKKGAG 152
BLAST of mRNA_Ecto-sp13_S_contig18739.5899.1 vs. uniprot
Match: A0A836CJE3_9STRA (CCT domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJE3_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 9.520e-17 Identity = 47/64 (73.44%), Postives = 52/64 (81.25%), Query Frame = -3
Query: 737 RVGAYTLEERAALVARFHAKRGRRIWRKKIKYDCRKKLADKRPRLKGRFVTQEELEGLDQETLA 928
RVGAYT ERAA + RFHAKR RRIWRKKIKYDCRKKLAD RPRLKGRFVT ++L G + +A
Sbjct: 294 RVGAYTRAERAARLERFHAKRARRIWRKKIKYDCRKKLADSRPRLKGRFVTAKDLNGPNGAAIA 357
BLAST of mRNA_Ecto-sp13_S_contig18739.5899.1 vs. uniprot
Match: A0A7S2UV04_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UV04_9STRA) HSP 1 Score: 86.7 bits (213), Expect = 3.250e-16 Identity = 43/62 (69.35%), Postives = 50/62 (80.65%), Query Frame = -3
Query: 743 RVGAYTLEERAALVARFHAKRGRRIWRKKIKYDCRKKLADKRPRLKGRFVTQEELEGLDQET 928
R+G YT EER A +ARFHAKR RRIWRK+IKY CRKKLA RPR+KGRFV Q+++E QET
Sbjct: 97 RIGIYTFEERKARIARFHAKRKRRIWRKRIKYSCRKKLAHSRPRIKGRFVCQKDVENA-QET 157
BLAST of mRNA_Ecto-sp13_S_contig18739.5899.1 vs. uniprot
Match: A0A4D9DDW1_9STRA (CCT domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DDW1_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 2.150e-15 Identity = 43/54 (79.63%), Postives = 47/54 (87.04%), Query Frame = -3
Query: 767 RVGAYTLEERAALVARFHAKRGRRIWRKKIKYDCRKKLADKRPRLKGRFVTQEE 928
R+G YTLEER VARF AKRGRRIWRKKIKYDCRKKLAD RPR+KGRFV ++E
Sbjct: 371 RIGIYTLEERKLRVARFQAKRGRRIWRKKIKYDCRKKLADNRPRVKGRFVRRDE 424
BLAST of mRNA_Ecto-sp13_S_contig18739.5899.1 vs. uniprot
Match: A0A7S2UZ02_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZ02_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 3.830e-15 Identity = 41/56 (73.21%), Postives = 48/56 (85.71%), Query Frame = -3
Query: 761 RVGAYTLEERAALVARFHAKRGRRIWRKKIKYDCRKKLADKRPRLKGRFVTQEELE 928
R+G YT EER A +ARFHAKR RRIWRK+IKYDCRKKLA+ RPR+KGRFV ++E E
Sbjct: 210 RIGIYTCEERKARIARFHAKRKRRIWRKRIKYDCRKKLAECRPRIKGRFVRRKEFE 265
BLAST of mRNA_Ecto-sp13_S_contig18739.5899.1 vs. uniprot
Match: A0A6V2X5R2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2X5R2_HETAK) HSP 1 Score: 85.9 bits (211), Expect = 2.680e-14 Identity = 45/70 (64.29%), Postives = 52/70 (74.29%), Query Frame = -3
Query: 719 RVGAYTLEERAALVARFHAKRGRRIWRKKIKYDCRKKLADKRPRLKGRFVTQEELEGLDQETLAKVTGLG 928
RVG YT+EER VARFHAKR RR+WRKKIKYDCRKKLA+ RPR+KGRFV + E G D A + +G
Sbjct: 271 RVGIYTVEERRRRVARFHAKRQRRVWRKKIKYDCRKKLAESRPRVKGRFVRRGE--GGDDAAAAGASPVG 338
BLAST of mRNA_Ecto-sp13_S_contig18739.5899.1 vs. uniprot
Match: A0A7S3DUU3_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DUU3_9STRA) HSP 1 Score: 81.3 bits (199), Expect = 4.900e-14 Identity = 37/55 (67.27%), Postives = 45/55 (81.82%), Query Frame = -3
Query: 764 RVGAYTLEERAALVARFHAKRGRRIWRKKIKYDCRKKLADKRPRLKGRFVTQEEL 928
R+G Y + R A +ARFHAKR RRIWRK+IKYDCRKKLAD RPR+KGRFV + ++
Sbjct: 138 RIGIYFPDARKARIARFHAKRARRIWRKRIKYDCRKKLADSRPRIKGRFVKRSDM 192
BLAST of mRNA_Ecto-sp13_S_contig18739.5899.1 vs. uniprot
Match: A0A7S1BH36_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BH36_9STRA) HSP 1 Score: 78.2 bits (191), Expect = 1.070e-13 Identity = 35/55 (63.64%), Postives = 45/55 (81.82%), Query Frame = -3
Query: 764 RVGAYTLEERAALVARFHAKRGRRIWRKKIKYDCRKKLADKRPRLKGRFVTQEEL 928
++G YT RAA +A+FH+KR RIWRK+IKYDCRKKLAD RPR+KGRFV + ++
Sbjct: 41 KIGVYTPAARAARIAKFHSKRKSRIWRKRIKYDCRKKLADSRPRIKGRFVKRADM 95 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18739.5899.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig18739.5899.1 >prot_Ecto-sp13_S_contig18739.5899.1 ID=prot_Ecto-sp13_S_contig18739.5899.1|Name=mRNA_Ecto-sp13_S_contig18739.5899.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=391bp MSTSASVLTANIADTLQLLLTVVIVPPPSSPPTLSSDAALVLLSPSSSSRback to top mRNA from alignment at Ecto-sp13_S_contig18739:1623..3284+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig18739.5899.1 ID=mRNA_Ecto-sp13_S_contig18739.5899.1|Name=mRNA_Ecto-sp13_S_contig18739.5899.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1662bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18739:1623..3284+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18739:1623..3284+ >mRNA_Ecto-sp13_S_contig18739.5899.1 ID=mRNA_Ecto-sp13_S_contig18739.5899.1|Name=mRNA_Ecto-sp13_S_contig18739.5899.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1173bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18739:1623..3284+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |