mRNA_Ecto-sp13_S_contig1871.5890.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1871.5890.1
Unique NamemRNA_Ecto-sp13_S_contig1871.5890.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1871.5890.1 vs. uniprot
Match: A0A6H5JBF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBF6_9PHAE)

HSP 1 Score: 289 bits (740), Expect = 8.800e-87
Identity = 152/173 (87.86%), Postives = 156/173 (90.17%), Query Frame = 3 
Query: 2424 PPSLGRVQWHRNRRPWGRGRIAEACW*CPICQGVGRRGRGGGPRRIGGATTSGPESSSKALQWAKTVSAKNAAALGSNAKHSALVSRPPRRHPSDRPGSRNCVAEEPGVGGANCNRASRDTSGGVCRGRIGACRGRGNSKSAAGGRRGGEPESLERGGTQRGPGTSATRNSEV 2942
            PPSLGRVQWHRNRRPWGRGRIAEACW CPICQGV RRGRGGGPRRIGGATTSGPES SKALQWAK VSAKNAA   S+A+ SALVSRPPRRH +DR GSRNCV E+PGV GANCNR  RDTSG VCRGRIGACRGRGNSKSAAGGRRGGE ESLERG TQRGPGTSATRNSEV
Sbjct:   40 PPSLGRVQWHRNRRPWGRGRIAEACWQCPICQGVARRGRGGGPRRIGGATTSGPESGSKALQWAKIVSAKNAA---SSAEQSALVSRPPRRHRNDRAGSRNCVTEKPGVRGANCNREPRDTSGNVCRGRIGACRGRGNSKSAAGGRRGGEAESLERGETQRGPGTSATRNSEV 209
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1871.5890.1 vs. uniprot
Match: D8LIT2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIT2_ECTSI)

HSP 1 Score: 279 bits (714), Expect = 3.590e-83
Identity = 146/168 (86.90%), Postives = 153/168 (91.07%), Query Frame = 3 
Query: 2439 RVQWHRNRRPWGRGRIAEACW*CPICQGVGRRGRGGGPRRIGGATTSGPESSSKALQWAKTVSAKNAAALGSNAKHSALVSRPPRRHPSDRPGSRNCVAEEPGVGGANCNRASRDTSGGVCRGRIGACRGRGNSKSAAGGRRGGEPESLERGGTQRGPGTSATRNSEV 2942
            R QWHRNRRPWG GRIAEA W CP+CQGV RRGRGGGPRRIG ATTSGPESSSKALQWAKTVS KNAAALGS+A+HSALVSRPPRRHP+DR GSRNCV EEPGVGGANCNR SRDTSG VCRGRIG+CR RGNSK+AAGGRRGGEPESLE+GGTQRGPGTSAT N  V
Sbjct:   34 RQQWHRNRRPWGGGRIAEARWQCPMCQGVARRGRGGGPRRIG-ATTSGPESSSKALQWAKTVSTKNAAALGSSAEHSALVSRPPRRHPNDRSGSRNCVTEEPGVGGANCNRESRDTSGNVCRGRIGSCRERGNSKNAAGGRRGGEPESLEKGGTQRGPGTSATWNRNV 200
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1871.5890.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JBF6_9PHAE8.800e-8787.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LIT2_ECTSI3.590e-8386.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1871contigEcto-sp13_S_contig1871:8572..15440 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size2943
Hectar predicted targeting categoryother localisation
Exons11
Cds size2943
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1871.5890.1prot_Ecto-sp13_S_contig1871.5890.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1871 8572..15440 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462959.1743739-CDS-Ecto-sp13_S_contig1871:8571..89941681462959.1743739-CDS-Ecto-sp13_S_contig1871:8571..8994Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1871 8572..8994 -
1681462959.1838913-CDS-Ecto-sp13_S_contig1871:9597..102001681462959.1838913-CDS-Ecto-sp13_S_contig1871:9597..10200Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1871 9598..10200 -
1681462959.1927106-CDS-Ecto-sp13_S_contig1871:10469..107011681462959.1927106-CDS-Ecto-sp13_S_contig1871:10469..10701Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1871 10470..10701 -
1681462959.2099452-CDS-Ecto-sp13_S_contig1871:11077..111771681462959.2099452-CDS-Ecto-sp13_S_contig1871:11077..11177Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1871 11078..11177 -
1681462959.225988-CDS-Ecto-sp13_S_contig1871:11396..115911681462959.225988-CDS-Ecto-sp13_S_contig1871:11396..11591Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1871 11397..11591 -
1681462959.2351258-CDS-Ecto-sp13_S_contig1871:11850..124921681462959.2351258-CDS-Ecto-sp13_S_contig1871:11850..12492Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1871 11851..12492 -
1681462959.243915-CDS-Ecto-sp13_S_contig1871:12904..129981681462959.243915-CDS-Ecto-sp13_S_contig1871:12904..12998Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1871 12905..12998 -
1681462959.2533348-CDS-Ecto-sp13_S_contig1871:13290..134291681462959.2533348-CDS-Ecto-sp13_S_contig1871:13290..13429Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1871 13291..13429 -
1681462959.2690725-CDS-Ecto-sp13_S_contig1871:14097..142271681462959.2690725-CDS-Ecto-sp13_S_contig1871:14097..14227Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1871 14098..14227 -
1681462959.277196-CDS-Ecto-sp13_S_contig1871:14702..148961681462959.277196-CDS-Ecto-sp13_S_contig1871:14702..14896Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1871 14703..14896 -
1681462959.2856956-CDS-Ecto-sp13_S_contig1871:15249..154401681462959.2856956-CDS-Ecto-sp13_S_contig1871:15249..15440Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1871 15250..15440 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1871.5890.1

>prot_Ecto-sp13_S_contig1871.5890.1 ID=prot_Ecto-sp13_S_contig1871.5890.1|Name=mRNA_Ecto-sp13_S_contig1871.5890.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=981bp
LLHLQERSDGGAKPYTETFARRHIERSEAAATAAGAGTGDRDGGGWCLLQ
KYIGPTGTRNSTLRCHWSAVSSHTPARVRRAHPEVVERHRFRLGSVEEIE
MSFRERSPDRSPFRQRLSDQSVPEQLVKETAGLELGAAERLSSSGGVYNG
CLLERSTNVFRADRKDLPCEHRCVTFEEPSPSTRGGLWPRSVREPMKSPA
LRQTVVEACTAALDHISQVTRGEFRPKLATTYFRQGQDGRTYLMFISRWA
GQSPSLGIDANAPLLCQSGTGSATLPIHDSLGLDHQTWLQHVIGMRVEPT
VETTISPNREGSEGGPGALQEYGRPVLHRLVCPGCGRSGIRGGVRCDNNG
SSTMHGDTQVRGRAPSHPVTTQNTGPAMCCPSTNCNDAVANLGDCTDNDK
VAAGEGYSSRAPSLHGLASATFPPLDRTVYTSLGVVVDVCTWSETLRGGH
AARNGDCGSIAINDRSTEVTGRRSIARAGVKRCFRVLNRLHPGVRAQTIS
VRCNEDLRLRLRRVSVCRECALEIAGASDTRLREMNDAAKRKVSEMAARL
GVTSSAPSLSERQRKARVSEDIKAVQRRFAAASSEPIQTRTRLQNCFGGG
PSRMGEVPIKQSGHVPKRPLGNRLGNRPSTTDGLSPRQQVFQHSPRKIVS
ATQPPGGFSLATKYHGEVRMTTSSDGKSVTETFFRSSNEGRVNETITGSV
LRHTSCGRDADDGSGADGGSGADGGGGDGSDEDCVGPDDGFDSFHETLAV
NAWQDERERHIQAQHEHKQQRQRQRQQQQQPEHHCGCKDNTAITGWNFYD
QSNIAFRSRRLLAAYSGTGIGDPGGGGVSPRRAGNARSAKASAAEDGAGV
RDVLAAPPPRALRVALRPSNGRRLSARKMLRRWEATLNIRHWSPVLRDGI
LVTGQVAETVSRKNLGLGARTATEHPAIRAAVYVAAELGLVVDAATARVP
REVGGGVNQRASRGGEPNAGRERLLPGTAR*
back to top

mRNA from alignment at Ecto-sp13_S_contig1871:8572..15440-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1871.5890.1 ID=mRNA_Ecto-sp13_S_contig1871.5890.1|Name=mRNA_Ecto-sp13_S_contig1871.5890.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6869bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1871:8572..15440- (Ectocarpus species13 EcNAP12_S_4_19m)
CTTCTCCACCTGCAAGAGAGAAGCGACGGCGGGGCTAAGCCCTACACAGA
GACATTCGCACGACGACACATCGAACGGTCTGAAGCGGCAGCGACGGCTG
CAGGGGCCGGGACTGGTGATAGGGATGGCGGCGGCTGGTGTTTGCTGCAG
AAATACATTGGACCCACGGGAACAAGAAACTCGACCCTGAGGTGCGCATA
TCAGTGGATGCTTCATAACAATGAATTTGGCAAGGAACTTCGTTGAAGCG
AAAATAACTTGTTCTGTAGAGGATGATGAGCGTGGTCTACGCAGTCATTC
AGCATATATGTTGCTTCGCCAGTCTCTCTAAGGTTCCATACTGCGAGATA
CATTGATACGCCATTCCCAACCTGTTCACTACAAATGGCCCTCGAAATAT
TGCATGCCAGCGCTGATAGCAAGCACTAAGGAATTCCCTCGCGGGAGTGC
CTCAGATGCCGTGTTGGCTGGCTGTTAGTGTCGCTCTTCGAAGTGAATAA
CGCGAATTCCTGGAAAACCTCAAACGGTGTTTCGTGGTGTGCAGGTGCCA
TTGGAGTGCGGTGTCATCTCATACCCCGGCGCGGGTCCGGCGCGCTCACC
CGGAAGTAGTGGAAAGACATAGGTTTCGTTTGGGCAGCGTTGAGGAGATA
GAAATGAGCTTCCGGGAACGATCCCCGGATCGGTCGCCGTTCCGGCAGCG
ATTGTCAGATCAGAGCGTGCCCGAACAGTTGGTCAAAGGTGCGAGGAGAT
AGACGTCGACGGTTGATTTCTCATGCACGAATAGTAGTCTTGAAATGTCT
TGCTGTATGAGATGCGCATGTGTTTACTGTGAATACTAGTAGTGGAGTAG
TACTGTACGGCCTGAATAGTGTGTACCACGACGAGTGTCAAAGCGAAACG
ATCGAAGTTGACCTTGAGGAGGCGTTCCGAAGGAACGCTCGGACATAATG
ACCGTTGGGAGAATATTTGACCTAGGATCAATGAACGCGCCGTGTAGGTG
AAGAAAGCAAAGAGAACAGATCTACCTTTCACCCCCGAATTTCCAGTCCT
GGAATAAGTGTGTTGTGTCCCGCACAGAAGAGAGGCCTGAATCGAGTAAG
GCATAGTGGCGACCACTTCGCACGGTGAATCTACCTGCGGACCGTCTGTT
CCGAATCGTCGTAGAGATCAGGAGGGACAGATATTGATGCCACCGCTCAC
TCCTCTGCTGCAGAGACCGCCGGGCTCGAGCTCGGGGCGGCGGAAAGGTT
ATCCAGCTCGGGGGGCGTGTACAACGGATGTCTGCTGGAGCGGAGCACAA
ATGTTTTTCGCGCTGACCGCAAAGACCTCCCCTGTGAACACAGGTAAGCA
CAAGCATGTAGTTTGCGGCAAGGAGTCCATCGAATGATCTCTTCCATCCG
TCGCCCATGCTCTTTACAAGAGTATCCAGGGTCTCAAGGAAGCAAAACTC
CGCCATTGTTCAGGGGGGGACTCGCTTTGACTTCGGCTGCTAAATGGAGT
TCAAGTACCGGATTTTTTGTGTGATAGGCGTATGTTTCCCTCCCCTGTCA
ACACGTGGGGTTTGCTCTTGGGTGTTTCGAAGTATCGATAAAGCTAACAA
GACCCCATTCAGACTGATTCCACGAGAAACACGACAAGCGCGGGGACAAG
AACGTGCTCGGAAGATCAGGCGAGTTTCTTCTGAGAATGTATGAAGCCCG
ACATTGTGATATACCCGAAAGGCTGCATGTGTGACCAGAGGCGTTTGAGC
ATACATCTTGTCTCCCGCAGGGGGTTGGGGGATTGCAGAGTGAGGTGTGA
TGGTCAACGGTTGTTTGGACGTACATAGACCACGTTCGTGCACATCGAAA
CTTGTAAGGGCACCGATTTTGCGACGAGGTGGTAGGCAACTAACACGCAT
AGGTATTAGCGCCTTGTTCCCCTACAAGACGTCGGCACACTTCTTCTTTA
CGCAGTATATTGAGAAACCGGAGGACTGCGCCACTCCCTATCTGCTACTA
TAATTTTTCAGGTGCGTGACATTCGAGGAACCATCCCCCTCGACCAGGGG
GGGGCTGTGGCCTCGAAGCGTGAGGGAGCCGATGAAGAGCCCCGCCCTGA
GGCAGACAGTCGTAGAGGCATGCACCGCAGCATTGGACCATATCTCGCAG
GTGTGTGACAGCAGATTGAAGACCATCAGCGCGCAGCCGTCGTCTTAGCC
GCGATAGCCGAAAAAAACGGTCAGGGCACAGCGAAAGATGGCGCACCGAG
GTTTTCTAGGTGGATGGCGAAAACATTGCGCGTTCTAATTACGGATTGCT
AGTGGCACGTCAAGTAGATGCCTTCAGTACCACGACAATGACAGATAGGG
TATCCGCTAGAAAAAATTGTCAACGGCAGCAAAGGCCTTGAAAAATCGCA
CAACGACTCCCCGAGTTTGTTTTTAACATGAACCACACCTAGGTGACAAG
AGGAGAATTCCGGCCGAAGTTGGCGACGACTTACTTCCGTCAGGGGCAGG
ACGGGCGGACTTATTTGATGTTCATCTCCCGATGGGGTAAGACGAACTAC
AGTTTTACCGAAAATCACCAACAAAAGCGCTGTCGTCTTTGCAAACTGTC
ACATGAACGGGAGAAGCAACAAGTTCGATGTTGCAACTTGTCCCGAGGGG
ATCTGAAAATCATAAACATGTTCTCCCGGCTTCCAATTTTTTTCAAGTAT
ACTCGGTTCTTCAGCCCAGATGCCCAGATGCCCAGATGCCCACCTGGCTG
CAGTATCACGTAGTTTGAACCCCATCCTTCATACTGTGAAGGTATTGAGT
CTTGGTTTCCGCTACAATGTGGCAAAAAAGGCAGCATGGGGATTGTGTGC
CATAAACGCAAAAACCACGACCCCTTAAAGGCCACCAACCATGCCGCACA
TTGACAAGCGTGACTACATGGTTTGATCTGTTCATATCCCCATTGGAGCA
GGTCAGAGCCCTTCACTTGGAATCGACGCGAATGCACCACTGTTGTGCCA
AAGTGGCACGGGTAGCGCAACACTGCCCATCCATGACTCCTTAGGACTTG
ACCACCAGACCTGGTTACAGCACGTGATTGGGATGAGAGTAGAACCTACC
GTCGAGACCACAATAAGCCCAAATCGAGAGGGAAGTGAAGGAGGCCCTGG
GGCGCTGCAAGAGTACGGGAGACCTGTACTCCACCGACTCGTATGCCCTG
GATGCGGTCGCTCCGGCATACGAGGTGGTGTTCGTTGCGATAACAACGGC
TCGAGTACGATGCATGGGGATACACAAGTCCGTGGAAGAGCCCCTAGCCA
CCCAGTGACGACGCAGAACACGGGCCCTGCAATGTGTTGTCCAAGCACGA
ATTGCAACGATGCGGTGGCGAACTTGGGAGACTGCACCGACAACGATAAG
GTGGCTGCAGGGGAAGGATACTCGTCACGGGCACCATCGCTTCATGGCTT
GGCGTCCGCTACCTTCCCTCCACTCGACCGCACAGTCTACACAAGCCTCG
GCGTAGTTGTGGATGTTTGTACTTGGTCTGAAACCCTCCGCGGTGGCCAC
GCTGCACGAAATGGCGACTGTGGGTCGATTGCCATCAACGGTGAGAGCGC
GGAAAATCTTGACCTTTGCGCACACGTGCTGCATGATGGCTGTGGCACAG
CTTCCAGCAACAAACGTAGACGGCGGTGGTGCATCCCACACATCGAGCTA
CCGCGCACCGTGATGCATCCGCCCCCGAAACGATGTTGTCACCGTCGTTC
GTAGTAGCTATTCCGGACGCCGCATGAGCGACACTAGTAATGAGTCTCCT
CCAATGCGTAAGAACGTTCAACGAGAATAACGTGAACCCCACCCTGCAGA
CCGTTCAACGGAAGTCACAGGGAGAAGATCAATCGCCCGGGCCGGAGTCA
AGCGATGCTTTCGGGTGCTCAATAGGCTCCACCCAGGAGTCCGCGCGCAA
ACAATCTCAGTGCGTTGCAATGAAGATCTCAGGCTTCGGTTGCGGAGAGT
CAGTGTCTGCAGAGAGTGTGCCCTCGAAATCGCCGGCGCTTCGGGTGGGT
GCCCAGATGCTTGTTGCCGTTAATCGCCGGACAAGAAGAGAAAAAGTTGA
ACAAGGCGGCTTTGCGGTTTGTTATGGCTGAAAATCGGCACGATATATCG
TTAATTCCGAAGCGAAGAAGAAGTGAACCCGTCGGACGTATATCAGGGCT
GACAGAAATCAAGATTTCAACATATTTCGCACTTGTCGACTCAGCCTAAA
TACACTCCAACAGATACGCGACTCCGCGAGATGAATGATGCGGCGAAGAG
AAAAGTCAGTGAGATGGCCGCCCGCCTGGGGGTCACGTCCTCCGCCCCGT
CCCTGTCAGAACGGTGAGGACGAGGGTCACTGCCACCGCGTTTTGTACCT
GTTGATGAAATTGTCGTCCCTCAAACCCGAGACGGCTCGACCAGCAGGGT
GGTTTTGTGCCAGCAATCTTGCTCACGTTTCCCGAGTCTGACGTCGATTC
CAAAACAGGTCTATTCATTGATAACATGCTGGGTTCGATGCTTCGCGCAA
CGGCCTGGTCCACATTGAGTATTCTACGATCGTACACGACGCTATGCTTG
TCTTGTTCTTCTAGTCGCGGCAGCGCTTGATACGCGCAACGCTGACCTCA
TCATCCCCGGCTTCAATCTGAATTGCACCTCTCAATCACCCACGTGTTCT
GGAATCGCCTTGTAAACCCTAACCCTTGTCCTACCAAAGCCAACGCAAAG
CTCGAGTTTCGGAAGACATCAAAGCTGTCCAACGACGATTCGCGGCAGCA
TCATCAGAACCCATTCAGACCCGAACACGCTTGCAGAACTGCTTCGGGGG
CGGGCCAAGCCGCATGGGCGAGGTGCCGATAAAGCAGTCTGGACATGTTC
CCAAGCGACCGCTCGGTAATAGACTCGGCAATCGACCGAGCACAACTGAT
GGCCTATCGCCCAGACAGCAGGTACAGCGTTTTGAGAGACAATCTTCCAA
CGAGAAATAATCTTAGTAGCCCTTGTGTTAGATGCCTTTTACGGGACAGG
AGCCTGTATTTCATGTTCGGTTTTGCTTTGACTTATGGAGTTGGGAATGT
TTCCGTGGACAAAGGGGGGTCAATGCAGTGAGTGCTAAACAACAAAGCCA
ACCATTTTCATTGGTCGTGCTTCGCCTGGATACGTGTTTCACACGATAAA
TCTGACAATGGGTCAACGGTTGCCTCCTATTTTCGTGAAGGTATTCCAAC
ACTCTCCGCGCAAGATCGTGAGCGCAACCCAACCGCCCGGTGGGTTCAGC
CTTGCGACTAAGTACCATGGGGAGGTGCGGATGACAACATCGAGCGACGG
CAAATCGGTCACTGAGACTTTTTTTCGCAGCAGCAACGAGGGTAGGGTGA
ATGAAACCATTACCGGCAGCGTCCTACGGCACACCTCTTGTGGAAGAGAT
GCCGATGATGGTAGCGGTGCCGATGGTGGTAGCGGTGCCGATGGTGGCGG
CGGTGATGGTAGTGACGAAGATTGTGTCGGCCCGGATGATGGCTTCGATT
CTTTTCATGAAACTCTGGCAGTGAATGCTTGGCAAGACGAACGTGAAAGA
CACATACAAGCGCAGCACGAACACAAGCAACAACGGCAGCGGCAGCGGCA
GCAGCAACAGCAGCCAGAACACCATTGTGGCTGCAAAGACAACACAGCTA
TCACTGGGTGGAACTTCTACGACCAATCTAATATTGCGTTCCGCAGCCGC
CGTCTCTTGGCCGCGTACAGTGGCACCGGAATAGGAGACCCTGGGGGCGG
GGGCGTATCGCCGAGGCGTGCTGGTAATGCCCGATCTGCCAAGGTGACTC
GTTTTCGATATGCGTACAAGGGTCTCAGTAGTGAACATGTCGACACCAAC
ATCCTGGTCACACGGTCGTACTGGGGGATATTTGTATTTGTGCACGGTAA
CTCGCTTGAGCGAAGGTTGTGCTCCGAAGTGAGCGTTTTCCCGCCAAAAA
TGTATAATAGTCACTGCAAATGACCAAGAAACATTGGTACGTGGGAATGC
CTCGATACGTCGTCTTCTTGCCAATATTGACATACTTAGCTGCCTTTCCA
CACCAGTGTCTACCTCTCCGTTAGTTCGTGTGATTGAACATCATCGACCC
GTGGTACTAAGTGTGCCATCCGAATACTGGGAATCGGTAATGAAATCCTC
TCCCGGTTATCGAACCCACATGCATTGCTTTCAGCGTTAGTGCACGACGA
ACGTTCTTATTGCTCAAACGTTGTCAATTGCAAGGCCTCATCACCCCCCC
CCTCCTCGTCATTTTCTACCGCCGCGGTGATCCTCGACAGTCAGCAACAC
CCCTGCGTGAACATAGTCAGCAGCAGTCGCACTCTCCTACAACGCGTGCC
CCTCGTGTTTCACGCTCTGCACGGGCACGAGCACTAGCACCGGCAGGCGT
CGGCCGCCGAGGACGGGGCGGGGGTCCGAGACGTATTGGCGGCGCCACCA
CCTCGGGCCCTGAGAGTAGCTCTAAGGCCCTCCAATGGGCGAAGACTGTC
AGCGCGAAAAATGCTGCGGCGTTGGGAAGCAACGCTAAACATTCGGCATT
GGTCTCCCGTCCTCCGAGACGGCATCCTAGTGACCGGCCAGGTAGCAGAA
ACTGTGTCGCGGAAGAACCTGGGGTTGGGGGCGCGAACTGCAACAGAGCA
TCCCGCGATACGAGCGGCGGTGTATGTCGCGGCCGAATTGGGGCTTGTCG
TGGACGCGGCAACAGCAAGAGTGCCGCGGGAGGTAGGAGGGGGGGTGAAC
CAGAGAGCCTCGAGAGGGGGGGAACCCAACGCGGGCCGGGAACGTCTGCT
ACCAGGAACAGCGAGGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1871:8572..15440-

>mRNA_Ecto-sp13_S_contig1871.5890.1 ID=mRNA_Ecto-sp13_S_contig1871.5890.1|Name=mRNA_Ecto-sp13_S_contig1871.5890.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2943bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1871:8572..15440- (Ectocarpus species13 EcNAP12_S_4_19m)
CTTCTCCACCTGCAAGAGAGAAGCGACGGCGGGGCTAAGCCCTACACAGA
GACATTCGCACGACGACACATCGAACGGTCTGAAGCGGCAGCGACGGCTG
CAGGGGCCGGGACTGGTGATAGGGATGGCGGCGGCTGGTGTTTGCTGCAG
AAATACATTGGACCCACGGGAACAAGAAACTCGACCCTGAGGTGCCATTG
GAGTGCGGTGTCATCTCATACCCCGGCGCGGGTCCGGCGCGCTCACCCGG
AAGTAGTGGAAAGACATAGGTTTCGTTTGGGCAGCGTTGAGGAGATAGAA
ATGAGCTTCCGGGAACGATCCCCGGATCGGTCGCCGTTCCGGCAGCGATT
GTCAGATCAGAGCGTGCCCGAACAGTTGGTCAAAGAGACCGCCGGGCTCG
AGCTCGGGGCGGCGGAAAGGTTATCCAGCTCGGGGGGCGTGTACAACGGA
TGTCTGCTGGAGCGGAGCACAAATGTTTTTCGCGCTGACCGCAAAGACCT
CCCCTGTGAACACAGGTGCGTGACATTCGAGGAACCATCCCCCTCGACCA
GGGGGGGGCTGTGGCCTCGAAGCGTGAGGGAGCCGATGAAGAGCCCCGCC
CTGAGGCAGACAGTCGTAGAGGCATGCACCGCAGCATTGGACCATATCTC
GCAGGTGACAAGAGGAGAATTCCGGCCGAAGTTGGCGACGACTTACTTCC
GTCAGGGGCAGGACGGGCGGACTTATTTGATGTTCATCTCCCGATGGGCA
GGTCAGAGCCCTTCACTTGGAATCGACGCGAATGCACCACTGTTGTGCCA
AAGTGGCACGGGTAGCGCAACACTGCCCATCCATGACTCCTTAGGACTTG
ACCACCAGACCTGGTTACAGCACGTGATTGGGATGAGAGTAGAACCTACC
GTCGAGACCACAATAAGCCCAAATCGAGAGGGAAGTGAAGGAGGCCCTGG
GGCGCTGCAAGAGTACGGGAGACCTGTACTCCACCGACTCGTATGCCCTG
GATGCGGTCGCTCCGGCATACGAGGTGGTGTTCGTTGCGATAACAACGGC
TCGAGTACGATGCATGGGGATACACAAGTCCGTGGAAGAGCCCCTAGCCA
CCCAGTGACGACGCAGAACACGGGCCCTGCAATGTGTTGTCCAAGCACGA
ATTGCAACGATGCGGTGGCGAACTTGGGAGACTGCACCGACAACGATAAG
GTGGCTGCAGGGGAAGGATACTCGTCACGGGCACCATCGCTTCATGGCTT
GGCGTCCGCTACCTTCCCTCCACTCGACCGCACAGTCTACACAAGCCTCG
GCGTAGTTGTGGATGTTTGTACTTGGTCTGAAACCCTCCGCGGTGGCCAC
GCTGCACGAAATGGCGACTGTGGGTCGATTGCCATCAACGACCGTTCAAC
GGAAGTCACAGGGAGAAGATCAATCGCCCGGGCCGGAGTCAAGCGATGCT
TTCGGGTGCTCAATAGGCTCCACCCAGGAGTCCGCGCGCAAACAATCTCA
GTGCGTTGCAATGAAGATCTCAGGCTTCGGTTGCGGAGAGTCAGTGTCTG
CAGAGAGTGTGCCCTCGAAATCGCCGGCGCTTCGGATACGCGACTCCGCG
AGATGAATGATGCGGCGAAGAGAAAAGTCAGTGAGATGGCCGCCCGCCTG
GGGGTCACGTCCTCCGCCCCGTCCCTGTCAGAACGCCAACGCAAAGCTCG
AGTTTCGGAAGACATCAAAGCTGTCCAACGACGATTCGCGGCAGCATCAT
CAGAACCCATTCAGACCCGAACACGCTTGCAGAACTGCTTCGGGGGCGGG
CCAAGCCGCATGGGCGAGGTGCCGATAAAGCAGTCTGGACATGTTCCCAA
GCGACCGCTCGGTAATAGACTCGGCAATCGACCGAGCACAACTGATGGCC
TATCGCCCAGACAGCAGGTATTCCAACACTCTCCGCGCAAGATCGTGAGC
GCAACCCAACCGCCCGGTGGGTTCAGCCTTGCGACTAAGTACCATGGGGA
GGTGCGGATGACAACATCGAGCGACGGCAAATCGGTCACTGAGACTTTTT
TTCGCAGCAGCAACGAGGGTAGGGTGAATGAAACCATTACCGGCAGCGTC
CTACGGCACACCTCTTGTGGAAGAGATGCCGATGATGGTAGCGGTGCCGA
TGGTGGTAGCGGTGCCGATGGTGGCGGCGGTGATGGTAGTGACGAAGATT
GTGTCGGCCCGGATGATGGCTTCGATTCTTTTCATGAAACTCTGGCAGTG
AATGCTTGGCAAGACGAACGTGAAAGACACATACAAGCGCAGCACGAACA
CAAGCAACAACGGCAGCGGCAGCGGCAGCAGCAACAGCAGCCAGAACACC
ATTGTGGCTGCAAAGACAACACAGCTATCACTGGGTGGAACTTCTACGAC
CAATCTAATATTGCGTTCCGCAGCCGCCGTCTCTTGGCCGCGTACAGTGG
CACCGGAATAGGAGACCCTGGGGGCGGGGGCGTATCGCCGAGGCGTGCTG
GTAATGCCCGATCTGCCAAGGCGTCGGCCGCCGAGGACGGGGCGGGGGTC
CGAGACGTATTGGCGGCGCCACCACCTCGGGCCCTGAGAGTAGCTCTAAG
GCCCTCCAATGGGCGAAGACTGTCAGCGCGAAAAATGCTGCGGCGTTGGG
AAGCAACGCTAAACATTCGGCATTGGTCTCCCGTCCTCCGAGACGGCATC
CTAGTGACCGGCCAGGTAGCAGAAACTGTGTCGCGGAAGAACCTGGGGTT
GGGGGCGCGAACTGCAACAGAGCATCCCGCGATACGAGCGGCGGTGTATG
TCGCGGCCGAATTGGGGCTTGTCGTGGACGCGGCAACAGCAAGAGTGCCG
CGGGAGGTAGGAGGGGGGGTGAACCAGAGAGCCTCGAGAGGGGGGGAACC
CAACGCGGGCCGGGAACGTCTGCTACCAGGAACAGCGAGGTGA
back to top