mRNA_Ecto-sp13_S_contig18706.5888.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18706.5888.1
Unique NamemRNA_Ecto-sp13_S_contig18706.5888.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18706.5888.1 vs. uniprot
Match: A0A6H5KQA5_9PHAE (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQA5_9PHAE)

HSP 1 Score: 322 bits (825), Expect = 1.200e-96
Identity = 238/302 (78.81%), Postives = 244/302 (80.79%), Query Frame = 1 
Query:  175 AIAASAGDIPHEGDPTSAPAVADAPKADAKSNDNGEVASTNTTSRSSGSTNSQDDRVRVLCRFRRTVERDGEEWGSPRGKWLVFGGGXXXXXXXXXXQEGGEGAPLDTVSVRMGGAWSTRGFDRVLKPGVDQAQVYSDVKRVAHGVSQGFNGTIFAYGQTGSGKTYTMGGATATLSAAPXXXXXXXXXXXXATGGGVTTPLGGHAGPTAPFPCHAGSAGALPLPAPSPSSPLAGTLEGTPTNSAPVPASLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGPGRGLHPIGTMPSSDAAGAVS 1080
            A A+ AGDIPHEGDPTSAPA ADAPKA+AKSND+ EVA           T++QDDRVRVLCRFRRTVERDGEE GSPRGKWLVFGGGXXXXXXXXX  EGGEGAPLDTVSVRMGGAWSTRGFDRVLKPGVDQAQVYSDVKRVAHGVSQGFNGTIFAYGQTG+GKTYTMGGATATLSA  XXXXXXXX        GVTTP GG A      PCH GSAG LP       SP AG  E TPTN APVPAS PXXXXXXXXXXXXXXXXXXXXXX XXX   GPGR LHPIG MPSS AAGAVS
Sbjct:   76 ATASPAGDIPHEGDPTSAPAAADAPKAEAKSNDSVEVAXXXXXXXXXXXTSNQDDRVRVLCRFRRTVERDGEERGSPRGKWLVFGGGXXXXXXXXX-HEGGEGAPLDTVSVRMGGAWSTRGFDRVLKPGVDQAQVYSDVKRVAHGVSQGFNGTIFAYGQTGAGKTYTMGGATATLSAXXXXXXXXXX--------GVTTPSGGGAXXXXXXPCHPGSAGVLPXXXXXXXSPFAGAPEATPTNLAPVPAS-PXXXXXXXXXXXXXXXXXXXXXXLXXXLPDGPGRRLHPIGIMPSSHAAGAVS 367
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BLAST of mRNA_Ecto-sp13_S_contig18706.5888.1 vs. uniprot
Match: D8LL93_ECTSI (Kinesin motor domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL93_ECTSI)

HSP 1 Score: 174 bits (440), Expect = 1.040e-49
Identity = 121/189 (64.02%), Postives = 124/189 (65.61%), Query Frame = 1 
Query:  511 MGGAWSTRGFDRVLKPGVDQAQVYSDVKRVAHGVSQGFNGTIFAYGQTGSGKTYTMGGATATLSAAPXXXXXXXXXXXXATGGGVTTPLGGHAGPTAPFPCHAGSAGALPLPAPSPSSPLAGTLEGTPTNSAPVPASLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGPGRGLHPIGTMPSSDAAGAV 1077
            MGGAWS RGFDRVLKPGVDQAQVYSDVKRVAHGVSQGFNGTIFAYGQTGSGKTYTMGGATATLSA+P       XXXXX       TP GG+            SAG LPLPAPSPSSP AG  E  PTNSAPVPAS                  XXXXXX      GG   GLHPI T+PSS A G V
Sbjct:    1 MGGAWSRRGFDRVLKPGVDQAQVYSDVKRVAHGVSQGFNGTIFAYGQTGSGKTYTMGGATATLSASPAAATPATXXXXX-----XXTPSGGNXXXXXXXXXXXXSAGVLPLPAPSPSSPFAGMPEAAPTNSAPVPAS---PGYSSSVSPSTLLMPXXXXXXLPLQPPGGLRTGLHPIWTLPSSYALGVV 181
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18706.5888.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KQA5_9PHAE1.200e-9678.81Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
D8LL93_ECTSI1.040e-4964.02Kinesin motor domain-containing protein (Fragment)... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18706contigEcto-sp13_S_contig18706:541..2572 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score176.4
Seed ortholog evalue2.4e-41
Seed eggNOG ortholog2880.D8LL93
Model size1080
KEGG koko:K10405,ko:K10406
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG0239@2759
Ec32 ortholog descriptionKinesin-like protein
Ec32 orthologEc-27_001770.1
Cds size1080
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462958.9884772-CDS-Ecto-sp13_S_contig18706:540..11161681462958.9884772-CDS-Ecto-sp13_S_contig18706:540..1116Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18706 541..1116 +
1681462959.0063596-CDS-Ecto-sp13_S_contig18706:1972..21531681462959.0063596-CDS-Ecto-sp13_S_contig18706:1972..2153Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18706 1973..2153 +
1681462959.0178294-CDS-Ecto-sp13_S_contig18706:2249..25721681462959.0178294-CDS-Ecto-sp13_S_contig18706:2249..2572Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18706 2250..2572 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18706.5888.1prot_Ecto-sp13_S_contig18706.5888.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18706 541..2572 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18706.5888.1

>prot_Ecto-sp13_S_contig18706.5888.1 ID=prot_Ecto-sp13_S_contig18706.5888.1|Name=mRNA_Ecto-sp13_S_contig18706.5888.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=360bp
MVDVVASTAVAVTESSSSGSGSGGGSSNVSSPSPLLQQPPLVPPPGPSPS
TTPRTATAAIAASAGDIPHEGDPTSAPAVADAPKADAKSNDNGEVASTNT
TSRSSGSTNSQDDRVRVLCRFRRTVERDGEEWGSPRGKWLVFGGGGGDGG
GGGGGQEGGEGAPLDTVSVRMGGAWSTRGFDRVLKPGVDQAQVYSDVKRV
AHGVSQGFNGTIFAYGQTGSGKTYTMGGATATLSAAPAAAPAAATPAAAA
TGGGVTTPLGGHAGPTAPFPCHAGSAGALPLPAPSPSSPLAGTLEGTPTN
SAPVPASLPPPGSSSSVSPATLLMPPPPPPPLPPPPPGGPGRGLHPIGTM
PSSDAAGAVS
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mRNA from alignment at Ecto-sp13_S_contig18706:541..2572+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18706.5888.1 ID=mRNA_Ecto-sp13_S_contig18706.5888.1|Name=mRNA_Ecto-sp13_S_contig18706.5888.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2032bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18706:541..2572+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTAGACGTTGTAGCCTCCACTGCTGTTGCGGTGACCGAAAGCAGCAG
CAGCGGCAGCGGCAGCGGCGGCGGCAGCAGCAACGTGTCGTCGCCGTCGC
CGCTCCTGCAGCAGCCGCCGCTTGTTCCTCCGCCGGGCCCGAGTCCCTCG
ACAACTCCGCGCACTGCTACCGCCGCCATCGCCGCTTCCGCCGGTGACAT
TCCCCACGAGGGAGATCCGACGAGCGCTCCCGCCGTCGCCGACGCACCCA
AGGCCGACGCGAAGAGCAACGACAATGGGGAGGTGGCCAGCACCAATACC
ACCAGCCGCAGCAGCGGCAGCACTAATAGTCAAGACGACCGAGTTCGGGT
GCTGTGCAGATTTCGGCGCACGGTGGAGAGGGACGGGGAGGAATGGGGAT
CGCCACGCGGCAAGTGGTTGGTCTTCGGGGGGGGGGGGGGGGATGGAGGC
GGCGGCGGCGGAGGCCAAGAGGGCGGGGAGGGAGCGCCGCTGGACACCGT
CTCGGTGCGCATGGGAGGCGCGTGGAGCACGAGGGGCTTTGACAGGGTTT
TGAAGCCCGGCGTTGATCAAGCCCAGGTGAACCAAGAAACCCACGGCGGT
AGGCGGCCACGCCGATGTAGTTGTGTACGGAGAAGGCAGGCTGAGGTAGG
AACCGTTAGCGTTTCGTGGGATATGAGGATATGGTTTCGTAAACGAGAGA
TCCTGCCCAATCAGAGGCCGCCTCTCTCCGGAACTGCTACATACTTTTCT
ATTTACCCTGCCCGTTGCTGATTGTCCGGGCCGAAACAGCACCAAACAAC
ACGACGACTCGGCTGCGCCCAAAGCCAACAACACCCATTGACGGTAAAAG
GGTTTCCCACTTGGGGTGTCGGTGCGGGTACTTGGTGATCACGCTTGCGG
GCACTTGCCGAGAGGGTTTCCGCGCAGCAGGAGTGACTCAAGTTCCTTCA
CTACTAGAGAGAGTGAGACACCTGGGCAATTGGAGAGCCTCGCGCGTCAA
GTACATGAAACTCATCACATCCAATCCACGTATCCCCGCGGAGATCTCGG
AGATCCGTATTGTGCCTAAACGTTTCCTGTGCGTTCGTGTTGGCGTCTAC
CAGCCCATTGCTTGCGAAATGAAGTGAGATGGAAAGTCACAACTGGTTTT
TGCTTGACTCTGTCGCGTGGCGCCGCCGATGGCGTAGGTGTAGCCAGACG
GGAAAAATACGGCGAGGGAAGTTGCTTCCGTCCGTACACAAGGGAAGCTA
GCTCGTCGTCACTATCTCACTTTTACGCACCGCTACCGTTGCACCGTTAC
GTCTGGTGGTTCTCCGTCGTCAGTCGCCACGCCATGTCGCCGGATGATCA
ACCCTCTGTTTCCCCTTTCGCCCACTGCAAAACATGATCATACCCCCCCC
CCCTCCGTTTTTTCTCTTTGCCTCCACAACAGGTGTACAGCGACGTGAAG
CGCGTGGCTCATGGGGTCTCCCAGGGCTTCAACGGCACCATCTTCGCCTA
CGGCCAGACGGGCTCCGGCAAGACCTACACCATGGGAGGTGCGACGGCTA
CGCTGTCCGCCGCCCCAGCCGCCGCCCCAGCCGCCGCCACCCCCGCCGCC
GCCGCCACAGGCGGTGTGACGACGCCATTGGGGGGGCACGCTGGGCCGAC
AGCCCCGTTCCCTTGTCACGCCGCCCCAGCCGCCGCCACCCCCGCCGCCG
CCGCCACAGGCGGTGTGACGACGCCGTTGGGGGGGCACGCTGGGCCGACA
GCCCCGTTCCCTTGTCACGCCGGCTCCGCCGGCGCCTTGCCGTTGCCGGC
GCCCTCGCCGTCATCGCCTCTGGCCGGCACTCTCGAAGGGACGCCGACAA
ACTCGGCGCCGGTGCCGGCGTCGCTCCCGCCGCCGGGTTCTTCTTCTTCT
GTGTCTCCCGCGACCCTCCTGATGCCACCGCCTCCGCCGCCGCCGCTGCC
ACCGCCGCCGCCCGGCGGGCCCGGGAGGGGGCTGCACCCGATCGGGACCA
TGCCATCCTCCGACGCCGCTGGGGCGGTGTCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18706:541..2572+

>mRNA_Ecto-sp13_S_contig18706.5888.1 ID=mRNA_Ecto-sp13_S_contig18706.5888.1|Name=mRNA_Ecto-sp13_S_contig18706.5888.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1080bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18706:541..2572+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTAGACGTTGTAGCCTCCACTGCTGTTGCGGTGACCGAAAGCAGCAG
CAGCGGCAGCGGCAGCGGCGGCGGCAGCAGCAACGTGTCGTCGCCGTCGC
CGCTCCTGCAGCAGCCGCCGCTTGTTCCTCCGCCGGGCCCGAGTCCCTCG
ACAACTCCGCGCACTGCTACCGCCGCCATCGCCGCTTCCGCCGGTGACAT
TCCCCACGAGGGAGATCCGACGAGCGCTCCCGCCGTCGCCGACGCACCCA
AGGCCGACGCGAAGAGCAACGACAATGGGGAGGTGGCCAGCACCAATACC
ACCAGCCGCAGCAGCGGCAGCACTAATAGTCAAGACGACCGAGTTCGGGT
GCTGTGCAGATTTCGGCGCACGGTGGAGAGGGACGGGGAGGAATGGGGAT
CGCCACGCGGCAAGTGGTTGGTCTTCGGGGGGGGGGGGGGGGATGGAGGC
GGCGGCGGCGGAGGCCAAGAGGGCGGGGAGGGAGCGCCGCTGGACACCGT
CTCGGTGCGCATGGGAGGCGCGTGGAGCACGAGGGGCTTTGACAGGGTTT
TGAAGCCCGGCGTTGATCAAGCCCAGGTGTACAGCGACGTGAAGCGCGTG
GCTCATGGGGTCTCCCAGGGCTTCAACGGCACCATCTTCGCCTACGGCCA
GACGGGCTCCGGCAAGACCTACACCATGGGAGGTGCGACGGCTACGCTGT
CCGCCGCCCCAGCCGCCGCCCCAGCCGCCGCCACCCCCGCCGCCGCCGCC
ACAGGCGGCGGTGTGACGACGCCGTTGGGGGGGCACGCTGGGCCGACAGC
CCCGTTCCCTTGTCACGCCGGCTCCGCCGGCGCCTTGCCGTTGCCGGCGC
CCTCGCCGTCATCGCCTCTGGCCGGCACTCTCGAAGGGACGCCGACAAAC
TCGGCGCCGGTGCCGGCGTCGCTCCCGCCGCCGGGTTCTTCTTCTTCTGT
GTCTCCCGCGACCCTCCTGATGCCACCGCCTCCGCCGCCGCCGCTGCCAC
CGCCGCCGCCCGGCGGGCCCGGGAGGGGGCTGCACCCGATCGGGACCATG
CCATCCTCCGACGCCGCTGGGGCGGTGTCC
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