mRNA_Ecto-sp13_S_contig18694.5880.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18694.5880.1
Unique NamemRNA_Ecto-sp13_S_contig18694.5880.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18694.5880.1 vs. uniprot
Match: D7FY58_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY58_ECTSI)

HSP 1 Score: 177 bits (449), Expect = 1.580e-54
Identity = 96/106 (90.57%), Postives = 99/106 (93.40%), Query Frame = 1 
Query:    1 MSDLPNWAKGEDGEPKADLADKLVDEAAGVKPEESADAAAAAATDPAAAGSDHAHEDSGLASRALCFFRFLAVLTVVLALVVIGTNCYIIYDKYTEIKGEPAKVRV 318
            MSDLPNWAKGE GEPKADLADKLVDEAAGVKPEESADAAAAAAT+PAAAGSDHA EDSGLASRALCFFRFLAVLTV+LALVVIGTNCYIIYDKYTEIK     +RV
Sbjct:    1 MSDLPNWAKGEGGEPKADLADKLVDEAAGVKPEESADAAAAAATEPAAAGSDHAREDSGLASRALCFFRFLAVLTVLLALVVIGTNCYIIYDKYTEIKARGILLRV 106
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18694.5880.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FY58_ECTSI1.580e-5490.57Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18694contigEcto-sp13_S_contig18694:2992..3309 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score180.3
Seed ortholog evalue4.9e-43
Seed eggNOG ortholog2880.D7FY58
Model size318
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.COPI associated protein
EggNOG OGs2C9HH@1,2RXY3@2759
Ec32 ortholog descriptionGolgi apparatus membrane protein TVP15
Ec32 orthologEc-24_003700.1
Cds size318
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462958.4889107-CDS-Ecto-sp13_S_contig18694:2991..33091681462958.4889107-CDS-Ecto-sp13_S_contig18694:2991..3309Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18694 2992..3309 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18694.5880.1prot_Ecto-sp13_S_contig18694.5880.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18694 2992..3309 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18694.5880.1

>prot_Ecto-sp13_S_contig18694.5880.1 ID=prot_Ecto-sp13_S_contig18694.5880.1|Name=mRNA_Ecto-sp13_S_contig18694.5880.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=106bp
MSDLPNWAKGEDGEPKADLADKLVDEAAGVKPEESADAAAAAATDPAAAG
SDHAHEDSGLASRALCFFRFLAVLTVVLALVVIGTNCYIIYDKYTEIKGE
PAKVRV
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mRNA from alignment at Ecto-sp13_S_contig18694:2992..3309+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18694.5880.1 ID=mRNA_Ecto-sp13_S_contig18694.5880.1|Name=mRNA_Ecto-sp13_S_contig18694.5880.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=318bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18694:2992..3309+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGGATCTGCCCAACTGGGCCAAGGGAGAAGACGGAGAGCCCAAGGC
CGACTTGGCCGACAAGTTGGTCGATGAGGCTGCCGGAGTCAAGCCGGAGG
AGAGCGCCGACGCTGCCGCCGCGGCCGCCACCGACCCGGCGGCCGCGGGG
AGCGACCACGCCCACGAAGACAGCGGACTCGCCTCGCGTGCGCTGTGCTT
CTTCAGGTTTCTCGCCGTGTTGACGGTGGTGTTGGCCCTGGTCGTTATCG
GCACCAACTGCTACATCATCTATGACAAGTACACCGAAATTAAGGGTGAG
CCAGCCAAAGTCCGCGTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18694:2992..3309+

>mRNA_Ecto-sp13_S_contig18694.5880.1 ID=mRNA_Ecto-sp13_S_contig18694.5880.1|Name=mRNA_Ecto-sp13_S_contig18694.5880.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=318bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18694:2992..3309+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGGATCTGCCCAACTGGGCCAAGGGAGAAGACGGAGAGCCCAAGGC
CGACTTGGCCGACAAGTTGGTCGATGAGGCTGCCGGAGTCAAGCCGGAGG
AGAGCGCCGACGCTGCCGCCGCGGCCGCCACCGACCCGGCGGCCGCGGGG
AGCGACCACGCCCACGAAGACAGCGGACTCGCCTCGCGTGCGCTGTGCTT
CTTCAGGTTTCTCGCCGTGTTGACGGTGGTGTTGGCCCTGGTCGTTATCG
GCACCAACTGCTACATCATCTATGACAAGTACACCGAAATTAAGGGTGAG
CCAGCCAAAGTCCGCGTT
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