mRNA_Ecto-sp13_S_contig18694.5879.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18694.5879.1
Unique NamemRNA_Ecto-sp13_S_contig18694.5879.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18694.5879.1 vs. uniprot
Match: D7FY57_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY57_ECTSI)

HSP 1 Score: 174 bits (440), Expect = 4.260e-55
Identity = 84/86 (97.67%), Postives = 85/86 (98.84%), Query Frame = 1 
Query:    1 MATDELRLADHFPLVHKSCKKPAARFFECFSEKADQPPEGDAAAARKGLAACAGLMADYDKCMSKVPARPLIRVQEEYRLAPGAKR 258
            MAT+ELRLADHFPLVHKSCKKPAA FFECFSEKADQPPEGDAAAARKGLAACAGLMADYDKCMSKVPARPLIRVQEEYRLAPGAKR
Sbjct:    1 MATEELRLADHFPLVHKSCKKPAASFFECFSEKADQPPEGDAAAARKGLAACAGLMADYDKCMSKVPARPLIRVQEEYRLAPGAKR 86
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18694.5879.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FY57_ECTSI4.260e-5597.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18694contigEcto-sp13_S_contig18694:802..2636 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score60.5
Seed ortholog evalue4.6e-07
Seed eggNOG ortholog325452.fgenesh_scip_prom.46568.8681
Model size261
Hectar predicted targeting categoryother localisation
Exons3
EggNOG OGs2C41S@1,2RATY@2759,3QGK8@4776
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-24_003710.1
Cds size261
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462958.4370112-CDS-Ecto-sp13_S_contig18694:801..8431681462958.4370112-CDS-Ecto-sp13_S_contig18694:801..843Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18694 802..843 -
1681462958.4476182-CDS-Ecto-sp13_S_contig18694:1470..15691681462958.4476182-CDS-Ecto-sp13_S_contig18694:1470..1569Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18694 1471..1569 -
1681462958.456116-CDS-Ecto-sp13_S_contig18694:2516..26361681462958.456116-CDS-Ecto-sp13_S_contig18694:2516..2636Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18694 2517..2636 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18694.5879.1prot_Ecto-sp13_S_contig18694.5879.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18694 802..2636 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18694.5879.1

>prot_Ecto-sp13_S_contig18694.5879.1 ID=prot_Ecto-sp13_S_contig18694.5879.1|Name=mRNA_Ecto-sp13_S_contig18694.5879.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=87bp
MATDELRLADHFPLVHKSCKKPAARFFECFSEKADQPPEGDAAAARKGLA
ACAGLMADYDKCMSKVPARPLIRVQEEYRLAPGAKR*
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mRNA from alignment at Ecto-sp13_S_contig18694:802..2636-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18694.5879.1 ID=mRNA_Ecto-sp13_S_contig18694.5879.1|Name=mRNA_Ecto-sp13_S_contig18694.5879.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1835bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18694:802..2636- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTACTGACGAGCTTCGTCTGGCCGACCACTTCCCACTGGTACACAA
GTCGTGCAAGAAGCCTGCTGCTAGGTTCTTCGAATGCTTCTCCGAGAAGG
CTGATCAGCCGCCAGAAGGGGTGAGAGCTGTCATCGTACATAAGTACTGC
TGTATACCATCGTCGATGCAACAACCTTGGATCGTAGACTGCAGCAGCGT
TGGTAAGTTCCACCGCATTGTGAATGTATTTGCCGCGCCATATCAATAGA
CGGCCATTTACAGCAGTACCAGCAGCAGCAGTCACGCCTTTTCCTGGACG
GCACTAGCTTGCGCACACACCTCGGTGGAATGTTGATGTTTAGGAGGTTC
TGTTCGGCCTGGATTCTTGGAAACACCGCCCTCCGAAAGTATGCTGGGCA
CGAGTCCCGTGTCACGGCAACAAGAGCAGTCCGTCATCCTTGAGAAGCAG
GGAGAGGTTTGGTCTTTGGAGACGGCAGACAATCACAAGAAGCAGCGAGC
AACATACGTACAACTGCAGTGGGGGTACCCGGTCAAGGCGGTCGCCCTAT
GAAAGACGGGTGGCTGGCATAGACGGAACTAATCAACTACACATTGAATA
TGGTGGCTGCCGGCCCTGGTCAGCCGCCCCACCACCGCGCTACTGGTGGA
CCCACACTACCGCTGTTGTGTCCCAGAATATTGTAAGTATATCGTAGATC
AATCCGTCGACACGGTTTGAAGATGAAGTGGGTTCAGCCCTCTCTTGCAC
ATTCTCGCTTCGCTACGTGAAGTGGAGGTGAACCTTGGCTTCCAGGCAGA
AGGCCTGGCGGTTGGTTGATTTCCTTGGGTGACTTCCTTGACTGATGAGT
ATTTTTTCTTTCGCACACCTGTAATGTAATACCAGGTACACGTACCCTTT
CTACAAGGTGCATTTCCTGGACCATAGCCATTCAGCCGTGCCGAAACGGA
GCACCTTTATCAGCGAGGCCAAACATACAGCCATCGCACGAGCCCCCGCT
TTTTCGTGGTTGATCGTTCGCCTGTCCTTGCCATGTGTCCTCGCCTTTCT
CCGCGACGCCGGTAAAGGATGCGGCTGCCGCGAGAAAGGGCTTGGCCGCG
TGCGCCGGCCTGATGGCCGACTACGACAAGTGCATGTCCAAGGTTCCCGC
AAGGCCGCTCATTCGGGTGAGCGAGATTAGGCACAAGCAGACATGCCTGG
AAGTTCGGGGTGCAGCTGTGCGCCGCGTGCAAGTTTGGCAGCCTCGATGC
AGCCAATTGGTGTTTTATGTTTTCGTTCCTCTTCCTCTCATGTAAGCGTG
TTGCTAGAGTTCGTGACGGCCACAAGCCTCGTCGTACACCCATTCGAGAC
CGTGCAAGCGCACCCAAAGGTTCCATGCCGTCGACAGGCTAAAGCACGGG
CGCGCCACTGGGCCGATGACACAGCCCTTGGTTCCGATGCGACTTTGTGT
TGTGTGCGCCGGAAACGATGAATGTGAAACAACTTATGTCTGAGCGCTTC
TCGCATGGCCGACCCCAGGACTTGCGCGAGCTCCCAATTGTCCTTCCCCA
TTCCGCCCCCCGTCAAGTGTATCCCTGGAAGGAAATGGTTTCTCGGCGTT
GTCCGCCCAGTTAGCGTGGGTGCGACGCGTTTGGGTGCTATGGTGGATAA
GCCCTCCGGAGCCGTGTATTGCGCCCCGGGTCTGCGTGATGCAATTATTA
TCTACCAAAGTCTACAGCACGGCATACAACAGATATCGAGATCACCTACA
TGCCCACCCTCACCAGATCCAACTTTTTTTTTTCAACCGTCAGGTTCAAG
AAGAATACCGTCTTGCCCCAGGCGCCAAGCGGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18694:802..2636-

>mRNA_Ecto-sp13_S_contig18694.5879.1 ID=mRNA_Ecto-sp13_S_contig18694.5879.1|Name=mRNA_Ecto-sp13_S_contig18694.5879.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=261bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18694:802..2636- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTACTGACGAGCTTCGTCTGGCCGACCACTTCCCACTGGTACACAA
GTCGTGCAAGAAGCCTGCTGCTAGGTTCTTCGAATGCTTCTCCGAGAAGG
CTGATCAGCCGCCAGAAGGGGATGCGGCTGCCGCGAGAAAGGGCTTGGCC
GCGTGCGCCGGCCTGATGGCCGACTACGACAAGTGCATGTCCAAGGTTCC
CGCAAGGCCGCTCATTCGGGTTCAAGAAGAATACCGTCTTGCCCCAGGCG
CCAAGCGGTAA
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