mRNA_Ecto-sp13_S_contig1869.5876.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1869.5876.1
Unique NamemRNA_Ecto-sp13_S_contig1869.5876.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1869.5876.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1869contigEcto-sp13_S_contig1869:8289..10296 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1293
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-01_007300.1
Cds size1089
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462958.2745965-CDS-Ecto-sp13_S_contig1869:8288..84771681462958.2745965-CDS-Ecto-sp13_S_contig1869:8288..8477Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1869 8289..8477 +
1681462958.284824-CDS-Ecto-sp13_S_contig1869:8724..88651681462958.284824-CDS-Ecto-sp13_S_contig1869:8724..8865Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1869 8725..8865 +
1681462958.293793-CDS-Ecto-sp13_S_contig1869:9333..100921681462958.293793-CDS-Ecto-sp13_S_contig1869:9333..10092Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1869 9334..10092 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462958.3037736-UTR-Ecto-sp13_S_contig1869:10092..102961681462958.3037736-UTR-Ecto-sp13_S_contig1869:10092..10296Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1869 10093..10296 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1869.5876.1prot_Ecto-sp13_S_contig1869.5876.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1869 8289..10092 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1869.5876.1

>prot_Ecto-sp13_S_contig1869.5876.1 ID=prot_Ecto-sp13_S_contig1869.5876.1|Name=mRNA_Ecto-sp13_S_contig1869.5876.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=363bp
MKATGPPRYEYRLGFRYASSNDSSVVESGLRGQCIASSDRISCWRQDKYS
ESLRPKSGNTPNAQAAAAHAVTGRDLAAIQIQRFVRGWRARVWAIKVMHD
RAWRALLVIQATWRGALARNKLLRQEGPSDLPHEEENKDSNISFHIRNRQ
RSKGAKLATPSLGRISEQQPNRGCPERGAWEQSWARVCLERPSFRDRVRV
WQSIAELKRAGGRGRMGITNKEAWVALCQSSGSASVAATLLSNEEYLLGR
RLQQQDGRWRPDEIPSYLSLDGGPGASAGQIFRRTLPPSVARPFSAGARR
CDRLPVMEKGKKMGSESTSDFGVFNCVSSLFYDIPRTSATTTTIPAEGLS
KNQRQRCLYSTQ*
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mRNA from alignment at Ecto-sp13_S_contig1869:8289..10296+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1869.5876.1 ID=mRNA_Ecto-sp13_S_contig1869.5876.1|Name=mRNA_Ecto-sp13_S_contig1869.5876.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2008bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1869:8289..10296+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGGCAACAGGACCGCCTCGATACGAATACCGGCTTGGTTTCAGATA
TGCCAGCAGTAATGACAGCTCCGTAGTCGAAAGCGGACTGCGCGGACAAT
GTATTGCTTCATCGGACCGGATTTCGTGCTGGCGGCAAGACAAATATTCT
GAATCTCTCAGACCGAAGTCTGGTAACACTCCAAATGCGGTAAGGGTGCA
CGAGATAAAAGGCCACGTGGTCTCTACGGATTTACGTACACAGAAGCCAA
TGAGTTGCTGAGATCATCACGAGCACGTTTGCCACAGAAAGCTCATGCAT
CGCCTGGAGAGAGAAAGAGAGAGAGAGAGACAAAGAGCAGGGACAGACGA
GACTTCTGTGCCCCGGTTGTTGTGCATCGAACGCCAACCTGAGGACCTCC
TGGAATGGAAAATCGTCGATACAACGTGTAATACAGCAGGCCGCAGCAGC
CCATGCCGTCACTGGCCGAGATTTGGCAGCAATCCAGATACAGCGATTTG
TCCGGGGTTGGCGGGCTCGAGTGTGGGCGATCAAGGTGATGCATGATCGA
GCGTGGAGGGCACTTCTTGTCATACAGGTACGTAAAGTAGTAGATGAAAT
CTACTTGTAAGTAAAAGTTTTTGTCAAAAACAAGTCCAGCCTGTCGTATC
TGGCGCTTTTGCGTTTGTTCTTGTTTCCTCTGCAACGTCTTTATGATTAC
ACCGAAATTCTGGAGAAAGAATATAATCGATCGGTCTGACGGAACAACTG
AAAGCATGACCACGAGTTGCAAACGCCGACTTATCGAAGGTTCATCCCCA
TCTGCGATTTTCTTATCCTGCAGTCCACGAGCTACATGCCGTCTAGATGT
ATGTGCAGTTCTTTCGTGAGATACTCCTCGCGCTAGGTGCTTCACATCGG
AGGCTGTAGGTGAAGTCGTCTCCACGACTCGCCCACCGCCCTCCATCACT
TTACACCCATATTCAAGAGCATCTCGTAGACAAGATCCAGCAATGACAGC
TCTACAATCTCGCGGGTTTTCGGTGTCCAACACAACTACATCTAGGCAAC
CTGGCGAGGGGCGCTAGCGCGGAACAAGCTTCTGCGGCAAGAAGGACCCA
GTGACTTACCCCATGAAGAAGAAAACAAAGACAGCAACATCTCCTTTCAC
ATCAGAAATAGACAGCGCTCGAAAGGCGCAAAACTCGCGACACCGTCGTT
GGGCAGGATTTCCGAACAACAACCAAACAGGGGTTGTCCAGAACGAGGCG
CTTGGGAACAATCCTGGGCAAGAGTGTGCCTTGAGCGACCGAGCTTTCGC
GATCGAGTGCGTGTGTGGCAATCCATTGCGGAGCTCAAAAGGGCCGGCGG
CCGGGGAAGAATGGGGATTACAAACAAAGAGGCCTGGGTCGCTTTGTGCC
AATCGTCCGGGAGCGCGTCTGTCGCTGCTACCTTGCTTTCTAATGAGGAG
TACCTGCTAGGAAGGCGGTTGCAACAGCAAGATGGACGGTGGCGGCCGGA
CGAAATACCGTCGTATTTAAGTCTGGATGGAGGCCCTGGTGCCAGTGCGG
GCCAAATCTTCCGACGTACCCTGCCACCGTCAGTTGCGAGGCCATTCTCG
GCGGGAGCGAGGCGTTGTGACCGGCTACCAGTGATGGAGAAAGGGAAGAA
AATGGGGTCTGAGTCGACCTCAGATTTTGGCGTCTTCAACTGCGTTTCTA
GCCTCTTTTACGATATTCCGAGGACCTCTGCGACAACGACGACGATACCG
GCAGAAGGCTTGAGCAAGAACCAACGACAACGGTGCTTGTACAGTACCCA
GTGATAGTATGGGAAAATGTGGAGTAAATACGCACAAGCCTCGTAGGTCA
CCACTGACGAGCAAACGCTAGGTCACGTTTTGCACTACTATCGACCAACC
AGACCGCACTACTCTATGAGCAAGCAATCGTGATTCGTCTCGGCATAGTT
TCGTCGAAACAGTTTATCCTCATAATTGAGCTAAGAGGAAGTTTCACGAA
AATAGGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1869:8289..10296+

>mRNA_Ecto-sp13_S_contig1869.5876.1 ID=mRNA_Ecto-sp13_S_contig1869.5876.1|Name=mRNA_Ecto-sp13_S_contig1869.5876.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1089bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1869:8289..10296+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGGCAACAGGACCGCCTCGATACGAATACCGGCTTGGTTTCAGATA
TGCCAGCAGTAATGACAGCTCCGTAGTCGAAAGCGGACTGCGCGGACAAT
GTATTGCTTCATCGGACCGGATTTCGTGCTGGCGGCAAGACAAATATTCT
GAATCTCTCAGACCGAAGTCTGGTAACACTCCAAATGCGCAGGCCGCAGC
AGCCCATGCCGTCACTGGCCGAGATTTGGCAGCAATCCAGATACAGCGAT
TTGTCCGGGGTTGGCGGGCTCGAGTGTGGGCGATCAAGGTGATGCATGAT
CGAGCGTGGAGGGCACTTCTTGTCATACAGGCAACCTGGCGAGGGGCGCT
AGCGCGGAACAAGCTTCTGCGGCAAGAAGGACCCAGTGACTTACCCCATG
AAGAAGAAAACAAAGACAGCAACATCTCCTTTCACATCAGAAATAGACAG
CGCTCGAAAGGCGCAAAACTCGCGACACCGTCGTTGGGCAGGATTTCCGA
ACAACAACCAAACAGGGGTTGTCCAGAACGAGGCGCTTGGGAACAATCCT
GGGCAAGAGTGTGCCTTGAGCGACCGAGCTTTCGCGATCGAGTGCGTGTG
TGGCAATCCATTGCGGAGCTCAAAAGGGCCGGCGGCCGGGGAAGAATGGG
GATTACAAACAAAGAGGCCTGGGTCGCTTTGTGCCAATCGTCCGGGAGCG
CGTCTGTCGCTGCTACCTTGCTTTCTAATGAGGAGTACCTGCTAGGAAGG
CGGTTGCAACAGCAAGATGGACGGTGGCGGCCGGACGAAATACCGTCGTA
TTTAAGTCTGGATGGAGGCCCTGGTGCCAGTGCGGGCCAAATCTTCCGAC
GTACCCTGCCACCGTCAGTTGCGAGGCCATTCTCGGCGGGAGCGAGGCGT
TGTGACCGGCTACCAGTGATGGAGAAAGGGAAGAAAATGGGGTCTGAGTC
GACCTCAGATTTTGGCGTCTTCAACTGCGTTTCTAGCCTCTTTTACGATA
TTCCGAGGACCTCTGCGACAACGACGACGATACCGGCAGAAGGCTTGAGC
AAGAACCAACGACAACGGTGCTTGTACAGTACCCAGTGA
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