mRNA_Ecto-sp13_S_contig1869.5877.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1869.5877.1
Unique NamemRNA_Ecto-sp13_S_contig1869.5877.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1869.5877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1869contigEcto-sp13_S_contig1869:12318..12872 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size557
Hectar predicted targeting categoryother localisation
Exons1
Cds size363
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462957.974991-CDS-Ecto-sp13_S_contig1869:12317..126801681462957.974991-CDS-Ecto-sp13_S_contig1869:12317..12680Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1869 12318..12680 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462957.984903-UTR-Ecto-sp13_S_contig1869:12680..128721681462957.984903-UTR-Ecto-sp13_S_contig1869:12680..12872Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1869 12681..12872 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1869.5877.1prot_Ecto-sp13_S_contig1869.5877.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1869 12318..12680 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1869.5877.1

>prot_Ecto-sp13_S_contig1869.5877.1 ID=prot_Ecto-sp13_S_contig1869.5877.1|Name=mRNA_Ecto-sp13_S_contig1869.5877.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=121bp
PLQAGSKTLVLQLSSPLRCPPPLPLRAAVAKSPQLTFATLPYSVNNRLGS
KWRASGTSPQSSAVAAVLVAAAERVSTAAAGLENHPSPFFLPISDIGDKF
LHRCRSWFFPHLSRPNWPPP*
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mRNA from alignment at Ecto-sp13_S_contig1869:12318..12872+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1869.5877.1 ID=mRNA_Ecto-sp13_S_contig1869.5877.1|Name=mRNA_Ecto-sp13_S_contig1869.5877.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=555bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1869:12318..12872+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCACTCCAGGCCGGATCAAAAACTCTCGTGCTGCAGCTTTCATCGCCGCT
GCGGTGCCCACCTCCTCTACCGCTGCGTGCCGCCGTCGCAAAGTCTCCAC
AGCTGACCTTCGCCACGTTGCCATACAGTGTAAATAACCGGCTCGGGTCG
AAGTGGCGAGCTAGTGGCACTAGTCCTCAGTCCTCAGCTGTCGCTGCAGT
CCTTGTTGCAGCTGCTGAGCGTGTTAGTACAGCTGCCGCTGGCCTCGAGA
ACCACCCCTCACCCTTTTTTCTCCCCATCTCCGATATCGGTGACAAATTC
CTCCATCGCTGTCGCTCTTGGTTTTTCCCGCACCTGTCGAGGCCGAACTG
GCCGCCCCCCTAACCGAAACAGGGGGGAACCGCTACCGCCGGGCCCGTGG
ACGCCGCCGGGGTCCATGTCGCGTCCCCCCTTACACTGCCGATCAATATA
ACTCGGCTCCCGGACGCCAACGCAGCACGGAAAGCTTTCCGGAGGCCGCA
GCCGACATATGTTCGACTTGATTTGCCCACATGGCGTGTTCCGCACGTCC
GTCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1869:12318..12872+

>mRNA_Ecto-sp13_S_contig1869.5877.1 ID=mRNA_Ecto-sp13_S_contig1869.5877.1|Name=mRNA_Ecto-sp13_S_contig1869.5877.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=363bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1869:12318..12872+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCACTCCAGGCCGGATCAAAAACTCTCGTGCTGCAGCTTTCATCGCCGCT
GCGGTGCCCACCTCCTCTACCGCTGCGTGCCGCCGTCGCAAAGTCTCCAC
AGCTGACCTTCGCCACGTTGCCATACAGTGTAAATAACCGGCTCGGGTCG
AAGTGGCGAGCTAGTGGCACTAGTCCTCAGTCCTCAGCTGTCGCTGCAGT
CCTTGTTGCAGCTGCTGAGCGTGTTAGTACAGCTGCCGCTGGCCTCGAGA
ACCACCCCTCACCCTTTTTTCTCCCCATCTCCGATATCGGTGACAAATTC
CTCCATCGCTGTCGCTCTTGGTTTTTCCCGCACCTGTCGAGGCCGAACTG
GCCGCCCCCCTAA
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