mRNA_Ecto-sp13_S_contig18681.5870.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig18681.5870.1
Unique Name	mRNA_Ecto-sp13_S_contig18681.5870.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig18681.5870.1 vs. uniprot
Match: D8LK92_ECTSI (C2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK92_ECTSI)

HSP 1 Score: 180 bits (457), Expect = 6.890e-51
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1

Query:   22 IGKVVANKGGLVCKLRLRGTTLCFVSCHLQAHEGQNHLARRNSSCAEILQGARLGDRRMVDVDSQFHHVFWLGDMNYRINLGLG 273
            IGKVVANKGGLVCKLRLRGTTLCFVSCHLQAHEGQNHLARRNSSCAEILQGARLGDRRMVDVDSQFHHVFWLGDMNYRINLGLG
Sbjct:  185 IGKVVANKGGLVCKLRLRGTTLCFVSCHLQAHEGQNHLARRNSSCAEILQGARLGDRRMVDVDSQFHHVFWLGDMNYRINLGLG 268

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BLAST of mRNA_Ecto-sp13_S_contig18681.5870.1 vs. uniprot
Match: A0A6H5KKF7_9PHAE (C2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKF7_9PHAE)

HSP 1 Score: 180 bits (457), Expect = 8.190e-51
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1

Query:   22 IGKVVANKGGLVCKLRLRGTTLCFVSCHLQAHEGQNHLARRNSSCAEILQGARLGDRRMVDVDSQFHHVFWLGDMNYRINLGLG 273
            IGKVVANKGGLVCKLRLRGTTLCFVSCHLQAHEGQNHLARRNSSCAEILQGARLGDRRMVDVDSQFHHVFWLGDMNYRINLGLG
Sbjct:  126 IGKVVANKGGLVCKLRLRGTTLCFVSCHLQAHEGQNHLARRNSSCAEILQGARLGDRRMVDVDSQFHHVFWLGDMNYRINLGLG 209

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BLAST of mRNA_Ecto-sp13_S_contig18681.5870.1 vs. uniprot
Match: A0A7S3Y699_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y699_HETAK)

HSP 1 Score: 121 bits (303), Expect = 6.260e-33
Identity = 55/84 (65.48%), Postives = 65/84 (77.38%), Query Frame = 1

Query:   22 IGKVVANKGGLVCKLRLRGTTLCFVSCHLQAHEGQNHLARRNSSCAEILQGARLGDRRMVDVDSQFHHVFWLGDMNYRINLGLG 273
            IG ++ANKGGLVCKL+L  TTLCFVSCHL+AHEG  HL  RN SC EIL G ++G RR +D  +QFHHVFW GD+NYR +  LG
Sbjct:   75 IGHILANKGGLVCKLQLGHTTLCFVSCHLEAHEGGQHLVGRNLSCKEILLGTKVG-RRHMDAATQFHHVFWFGDLNYRTDFSLG 157

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BLAST of mRNA_Ecto-sp13_S_contig18681.5870.1 vs. uniprot
Match: A0A1V9ZWR6_9STRA (Phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZWR6_9STRA)

HSP 1 Score: 112 bits (281), Expect = 3.400e-27
Identity = 51/81 (62.96%), Postives = 61/81 (75.31%), Query Frame = 1

Query:   22 IGKVVANKGGLVCKLRLRGTTLCFVSCHLQAHEGQNHLARRNSSCAEILQGARLGDRRMVDVDSQFHHVFWLGDMNYRINL 264
            +G V+ NKGG V KL + G +LCFV+CHL AHE Q  L RRNS CAEIL GAR+G R+ + +D QF HVFW GDMNYR+NL
Sbjct:  171 VGNVIGNKGGTVLKLVVDGISLCFVNCHLAAHESQKFLDRRNSDCAEILNGARVG-RKSLSLDHQFDHVFWFGDMNYRVNL 250

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BLAST of mRNA_Ecto-sp13_S_contig18681.5870.1 vs. uniprot
Match: A0A1V9ZKW6_9STRA (Phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZKW6_9STRA)

HSP 1 Score: 111 bits (278), Expect = 1.020e-26
Identity = 51/84 (60.71%), Postives = 60/84 (71.43%), Query Frame = 1

Query:   22 IGKVVANKGGLVCKLRLRGTTLCFVSCHLQAHEGQNHLARRNSSCAEILQGARLGDRRMVDVDSQFHHVFWLGDMNYRINLGLG 273
            +G V+ NKGG V KL + G +LCFV+CHL AHE Q  L RRNS CAEIL GAR+G  + + +D QF H FW GDMNYRINL  G
Sbjct:  215 VGNVIGNKGGAVLKLTVDGLSLCFVNCHLAAHEAQKFLDRRNSDCAEILNGARVG-LKSLSIDHQFDHAFWFGDMNYRINLEYG 297

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BLAST of mRNA_Ecto-sp13_S_contig18681.5870.1 vs. uniprot
Match: A0A418G0F5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418G0F5_9STRA)

HSP 1 Score: 104 bits (259), Expect = 9.730e-26
Identity = 46/82 (56.10%), Postives = 60/82 (73.17%), Query Frame = 1

Query:   22 IGKVVANKGGLVCKLRLRGTTLCFVSCHLQAHEGQNHLARRNSSCAEILQGARLGDRRMVDVDSQFHHVFWLGDMNYRINLG 267
            +G V+ NKGG+V KL +   + CFV+CHL AHE Q  L RRNS  +EIL GAR+G R  +++D QF H FW+GDMNYR++LG
Sbjct:  122 VGNVIGNKGGVVVKLVVDQRSFCFVNCHLAAHEAQKFLERRNSDVSEILSGARVGQRG-IELDHQFDHAFWMGDMNYRVHLG 202

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BLAST of mRNA_Ecto-sp13_S_contig18681.5870.1 vs. uniprot
Match: A0A067CTV9_SAPPC (C2 domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CTV9_SAPPC)

HSP 1 Score: 108 bits (270), Expect = 1.220e-25
Identity = 49/81 (60.49%), Postives = 58/81 (71.60%), Query Frame = 1

Query:   22 IGKVVANKGGLVCKLRLRGTTLCFVSCHLQAHEGQNHLARRNSSCAEILQGARLGDRRMVDVDSQFHHVFWLGDMNYRINL 264
            +G V+ NKGG V KL + G +LCFV+CHL AHE Q  L RRNS C EIL GAR+G  + + +D QF H FW GDMNYRINL
Sbjct:  199 VGNVIGNKGGAVVKLVVDGVSLCFVNCHLAAHEAQKFLDRRNSDCTEILNGARVG-HKSLSLDHQFDHAFWFGDMNYRINL 278

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BLAST of mRNA_Ecto-sp13_S_contig18681.5870.1 vs. uniprot
Match: A0A6G0WJN4_9STRA (C2 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WJN4_9STRA)

HSP 1 Score: 108 bits (269), Expect = 1.990e-25
Identity = 47/82 (57.32%), Postives = 60/82 (73.17%), Query Frame = 1

Query:   22 IGKVVANKGGLVCKLRLRGTTLCFVSCHLQAHEGQNHLARRNSSCAEILQGARLGDRRMVDVDSQFHHVFWLGDMNYRINLG 267
            +G V+ NKGG+V KL +   + CFV+CHL AHE Q  L RRN+  AEIL GARLG ++ +++D QF H FW GDMNYR+NLG
Sbjct:  170 VGNVIGNKGGVVLKLHVNTRSFCFVNCHLAAHEAQKFLERRNNDVAEILNGARLG-QKSIELDHQFDHAFWFGDMNYRVNLG 250

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BLAST of mRNA_Ecto-sp13_S_contig18681.5870.1 vs. uniprot
Match: A0A3L6V7V2_9STRA (IPPc domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6V7V2_9STRA)

HSP 1 Score: 104 bits (259), Expect = 3.560e-25
Identity = 46/82 (56.10%), Postives = 60/82 (73.17%), Query Frame = 1

Query:   22 IGKVVANKGGLVCKLRLRGTTLCFVSCHLQAHEGQNHLARRNSSCAEILQGARLGDRRMVDVDSQFHHVFWLGDMNYRINLG 267
            +G V+ NKGG+V KL +   + CFV+CHL AHE Q  L RRNS  +EIL GAR+G R  +++D QF H FW+GDMNYR++LG
Sbjct:   13 VGNVIGNKGGVVVKLVVDQRSFCFVNCHLAAHEAQKFLERRNSDVSEILSGARVGQRG-IELDHQFDHAFWMGDMNYRVHLG 93

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BLAST of mRNA_Ecto-sp13_S_contig18681.5870.1 vs. uniprot
Match: A0A7S1UE04_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UE04_9STRA)

HSP 1 Score: 105 bits (263), Expect = 1.290e-24
Identity = 48/83 (57.83%), Postives = 61/83 (73.49%), Query Frame = 1

Query:   22 IGKVVANKGGLVCKLRLRGTTLCFVSCHLQAHEGQNHLARRNSSCAEILQGARLGDRRMVDVDSQFHHVFWLGDMNYRINLGL 270
            +  + ANKGG + KLR+RGTTLCFVS HL+AHEG NH   RN +  EIL GAR+G +  +D  +QF HVFW+GD+NYR+ L L
Sbjct:  384 LAHLAANKGGQLIKLRIRGTTLCFVSSHLRAHEGTNHAKGRNDNVVEILNGARVG-QSSLDATNQFSHVFWMGDLNYRVALAL 465

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig18681.5870.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig18681.5870.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LK92_ECTSI	6.890e-51	100.00	C2 domain-containing protein n=1 Tax=Ectocarpus si...	[more]
A0A6H5KKF7_9PHAE	8.190e-51	100.00	C2 domain-containing protein n=1 Tax=Ectocarpus sp...	[more]
A0A7S3Y699_HETAK	6.260e-33	65.48	Hypothetical protein (Fragment) n=1 Tax=Heterosigm...	[more]
A0A1V9ZWR6_9STRA	3.400e-27	62.96	Phosphatidylinositol-3,4,5-trisphosphate 5-phospha...	[more]
A0A1V9ZKW6_9STRA	1.020e-26	60.71	Phosphatidylinositol-3,4,5-trisphosphate 5-phospha...	[more]
A0A418G0F5_9STRA	9.730e-26	56.10	Uncharacterized protein n=1 Tax=Aphanomyces astaci...	[more]
A0A067CTV9_SAPPC	1.220e-25	60.49	C2 domain-containing protein n=2 Tax=Saprolegnia T...	[more]
A0A6G0WJN4_9STRA	1.990e-25	57.32	C2 domain-containing protein n=1 Tax=Aphanomyces e...	[more]
A0A3L6V7V2_9STRA	3.560e-25	56.10	IPPc domain-containing protein (Fragment) n=1 Tax=...	[more]
A0A7S1UE04_9STRA	1.290e-24	57.83	Hypothetical protein n=1 Tax=Phaeomonas parva TaxI...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig18681	contig	Ecto-sp13_S_contig18681:419..1404 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	0
Start	1
Seed ortholog score	179.1
Seed ortholog evalue	9.3e-43
Seed eggNOG ortholog	2880.D8LK92
Preferred name	INPP5E
Model size	273
KEGG rclass	RC00005,RC00078,RC00482
KEGG ko	ko:K07151,ko:K20278
KEGG Reaction	R04216,R04404,R05976,R09827
KEGG Pathway	ko00510,ko00513,ko00562,ko01100,ko04070,ko04141,map00510,map00513,map00562,map01100,map04070,map04141
KEGG Module	M00072
Hectar predicted targeting category	other localisation
Exons	2
EggNOG free text desc.	phosphatidylinositol dephosphorylation
EggNOG OGs	COG5411@1,KOG0565@2759
EC	2.4.99.18,3.1.3.36
Cds size	273
COG Functional cat.	T
CAZy	GT66
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko01000,ko01003

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462957.7538645-CDS-Ecto-sp13_S_contig18681:418..580	1681462957.7538645-CDS-Ecto-sp13_S_contig18681:418..580	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig18681 419..580 -
1681462957.7702436-CDS-Ecto-sp13_S_contig18681:1293..1404	1681462957.7702436-CDS-Ecto-sp13_S_contig18681:1293..1404	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig18681 1294..1404 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig18681.5870.1	prot_Ecto-sp13_S_contig18681.5870.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig18681 419..1404 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig18681:419..1404-
coding sequence from alignment at Ecto-sp13_S_contig18681:419..1404-

protein sequence of mRNA_Ecto-sp13_S_contig18681.5870.1

>prot_Ecto-sp13_S_contig18681.5870.1 ID=prot_Ecto-sp13_S_contig18681.5870.1|Name=mRNA_Ecto-sp13_S_contig18681.5870.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=91bp
MSYLPDRIGKVVANKGGLVCKLRLRGTTLCFVSCHLQAHEGQNHLARRNS
SCAEILQGARLGDRRMVDVDSQFHHVFWLGDMNYRINLGLG

mRNA from alignment at Ecto-sp13_S_contig18681:419..1404-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig18681.5870.1 ID=mRNA_Ecto-sp13_S_contig18681.5870.1|Name=mRNA_Ecto-sp13_S_contig18681.5870.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=986bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18681:419..1404- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGTATCTTCCCGACAGGATTGGAAAGGTGGTGGCGAACAAGGGCGG
GCTGGTGTGCAAGCTAAGACTCAGGGGGACTACGCTGTGCTTCGTCAGCT
GTCACTTGCAGGTACAAATCTGTCTTCTGTCTGAACGATTTTTAGGGTTG
TTGCTCTTTAACGATATGGCTGAGGCCAATTTTGCAGTATTTCCCGCCGT
AATTATGGGTTTGTTTTGATTGTTGTGTGCGGCGGACGCGCGAGGGGCGG
CGGAACCTCCTTCCTCCTCGTGCGGAGCCTCTGTCCTCCTCATGCGGCGG
AACCAGTCCCTCTACGCCAAGACTCTTGGCTCTTTCACGGTAAAGAAAAA
GAAAACAATTGAAGAACAGCATTGTCCAATCGAAACGACACTTGATCCAC
TTCTGAATTCGCAACGAAATAGGTACATCAATAGTAATTTATCGACTTCC
GTTTTTGCTACAACCGTCGCCACTTGACTTGCTGGTGTGGGAGGCCACAA
GGAGTGGCAAAACCACCTCGTGCAGCGGAACCAGTCCCTCTAATCCAAAA
ATATTTCACTCCTCCACGGCAACACAAAAAATATGCAAGAGGAAGGGAAG
AACGAGCCATTCACGACTTTGTTTTTTTTGCCACCGTGAGACTTCAACTA
ACCTTTGATCTGGAAGGCGCACGAGGCGGCAGAACCTCCTCGCGAGGCGA
AACAATTCCCTCTACCCACACCAAGTCTTGGCTCTTTCACGATAATAAAA
GAACAATGACGCGAGGAGCCATACACGGCTTTCATTTTGTTGCCATGTTG
AACATTTTTCTCTTGATCTGGAAGGCGCACGAGGGGCAGAATCACCTGGC
GAGACGCAACTCGTCCTGTGCGGAGATCCTGCAGGGCGCGCGGCTGGGGG
ATCGGCGGATGGTAGATGTGGACAGCCAGTTCCACCACGTGTTCTGGCTC
GGGGACATGAATTACAGGATCAACCTGGGGCTTGGA

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18681:419..1404-

>mRNA_Ecto-sp13_S_contig18681.5870.1 ID=mRNA_Ecto-sp13_S_contig18681.5870.1|Name=mRNA_Ecto-sp13_S_contig18681.5870.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=273bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18681:419..1404- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGTATCTTCCCGACAGGATTGGAAAGGTGGTGGCGAACAAGGGCGG
GCTGGTGTGCAAGCTAAGACTCAGGGGGACTACGCTGTGCTTCGTCAGCT
GTCACTTGCAGGCGCACGAGGGGCAGAATCACCTGGCGAGACGCAACTCG
TCCTGTGCGGAGATCCTGCAGGGCGCGCGGCTGGGGGATCGGCGGATGGT
AGATGTGGACAGCCAGTTCCACCACGTGTTCTGGCTCGGGGACATGAATT
ACAGGATCAACCTGGGGCTTGGA