mRNA_Ecto-sp13_S_contig18677.5865.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig18677.5865.1
Unique Name	mRNA_Ecto-sp13_S_contig18677.5865.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

[Close]

BLAST of mRNA_Ecto-sp13_S_contig18677.5865.1 vs. uniprot
Match: A0A6H5KZM5_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZM5_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 4.700e-33
Identity = 55/57 (96.49%), Postives = 57/57 (100.00%), Query Frame = 1

Query:    1 MATTASDIICHSCYEPGHIRRNCPKLKNRAKKKTKPAGATKWCSKHNTTSHSNEECY 171
            MATTASDIICHSCYEPGHIRRNCPK+KNRAKKKTKPAGATKWCSKHNTTSHS+EECY
Sbjct:   99 MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKHNTTSHSDEECY 155

[Close]

BLAST of mRNA_Ecto-sp13_S_contig18677.5865.1 vs. uniprot
Match: A0A6H5K783_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K783_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 7.450e-33
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 1

Query:    1 MATTASDIICHSCYEPGHIRRNCPKLKNRAKKKTKPAGATKWCSKHNTTSHSNEECY 171
            MATTASDIICHSCYEPGHIRRNCPK+KNRAKKKTKPAGATKWC KHNTTSHS+EECY
Sbjct:  108 MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCFKHNTTSHSDEECY 164

[Close]

BLAST of mRNA_Ecto-sp13_S_contig18677.5865.1 vs. uniprot
Match: A0A6H5JF66_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF66_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 1.240e-32
Identity = 55/57 (96.49%), Postives = 57/57 (100.00%), Query Frame = 1

Query:    1 MATTASDIICHSCYEPGHIRRNCPKLKNRAKKKTKPAGATKWCSKHNTTSHSNEECY 171
            MATTASDIICHSCYEPGHIRRNCPK+KNRAKKKTKPAGATKWCSKHNTTSHS+EECY
Sbjct:  236 MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKHNTTSHSDEECY 292

[Close]

BLAST of mRNA_Ecto-sp13_S_contig18677.5865.1 vs. uniprot
Match: A0A6H5LLS9_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LLS9_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 1.740e-32
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 1

Query:    1 MATTASDIICHSCYEPGHIRRNCPKLKNRAKKKTKPAGATKWCSKHNTTSHSNEECY 171
            MATTASDIICHSCYEPGHIRRNCPK+KNRAKKKTKPAG TKWCSKHNTTSHS+EECY
Sbjct:  122 MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGGTKWCSKHNTTSHSDEECY 178

[Close]

BLAST of mRNA_Ecto-sp13_S_contig18677.5865.1 vs. uniprot
Match: A0A6H5KP59_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP59_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 2.790e-32
Identity = 55/57 (96.49%), Postives = 57/57 (100.00%), Query Frame = 1

Query:    1 MATTASDIICHSCYEPGHIRRNCPKLKNRAKKKTKPAGATKWCSKHNTTSHSNEECY 171
            MATTASDIICHSCYEPGHIRRNCPK+KNRAKKKTKPAGATKWCSKHNTTSHS+EECY
Sbjct:   47 MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKHNTTSHSDEECY 103

[Close]

BLAST of mRNA_Ecto-sp13_S_contig18677.5865.1 vs. uniprot
Match: A0A6H5K055_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K055_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 7.190e-32
Identity = 50/57 (87.72%), Postives = 55/57 (96.49%), Query Frame = 1

Query:    1 MATTASDIICHSCYEPGHIRRNCPKLKNRAKKKTKPAGATKWCSKHNTTSHSNEECY 171
            MATT SDI+CHSCYEPGHIRRNCPK+KNRAK+KT+PAGATKWCSKH TTSHS+EECY
Sbjct:    1 MATTTSDIMCHSCYEPGHIRRNCPKIKNRAKQKTRPAGATKWCSKHYTTSHSDEECY 57

[Close]

BLAST of mRNA_Ecto-sp13_S_contig18677.5865.1 vs. uniprot
Match: A0A6H5JZ53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ53_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 8.530e-32
Identity = 55/57 (96.49%), Postives = 57/57 (100.00%), Query Frame = 1

Query:    1 MATTASDIICHSCYEPGHIRRNCPKLKNRAKKKTKPAGATKWCSKHNTTSHSNEECY 171
            MATTASDIICHSCYEPGHIRRNCPK+KNRAKKKTKPAGATKWCSKHNTTSHS+EECY
Sbjct:   99 MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKHNTTSHSDEECY 155

[Close]

BLAST of mRNA_Ecto-sp13_S_contig18677.5865.1 vs. uniprot
Match: A0A6H5KXR7_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXR7_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 8.540e-32
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 1

Query:    1 MATTASDIICHSCYEPGHIRRNCPKLKNRAKKKTKPAGATKWCSKHNTTSHSNEECY 171
            MATTASDIICHSCYEPGHIRRNCPK+KNRAKKKTKPAGATKWC KHNTTSHS+EECY
Sbjct:  195 MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCCKHNTTSHSDEECY 251

[Close]

BLAST of mRNA_Ecto-sp13_S_contig18677.5865.1 vs. uniprot
Match: A0A6H5L580_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L580_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 1.740e-31
Identity = 55/57 (96.49%), Postives = 57/57 (100.00%), Query Frame = 1

Query:    1 MATTASDIICHSCYEPGHIRRNCPKLKNRAKKKTKPAGATKWCSKHNTTSHSNEECY 171
            MATTASDIICHSCYEPGHIRRNCPK+KNRAKKKTKPAGATKWCSKHNTTSHS+EECY
Sbjct:  254 MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKHNTTSHSDEECY 310

[Close]

BLAST of mRNA_Ecto-sp13_S_contig18677.5865.1 vs. uniprot
Match: A0A6H5KMG5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMG5_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 1.840e-31
Identity = 55/57 (96.49%), Postives = 57/57 (100.00%), Query Frame = 1

Query:    1 MATTASDIICHSCYEPGHIRRNCPKLKNRAKKKTKPAGATKWCSKHNTTSHSNEECY 171
            MATTASDIICHSCYEPGHIRRNCPK+KNRAKKKTKPAGATKWCSKHNTTSHS+EECY
Sbjct:   29 MATTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKHNTTSHSDEECY 85

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig18677.5865.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig18677.5865.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KZM5_9PHAE	4.700e-33	96.49	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5K783_9PHAE	7.450e-33	94.74	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5JF66_9PHAE	1.240e-32	96.49	CCHC-type domain-containing protein n=2 Tax=Ectoca...	[more]
A0A6H5LLS9_9PHAE	1.740e-32	94.74	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5KP59_9PHAE	2.790e-32	96.49	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5K055_9PHAE	7.190e-32	87.72	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5JZ53_9PHAE	8.530e-32	96.49	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KXR7_9PHAE	8.540e-32	94.74	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5L580_9PHAE	1.740e-31	96.49	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5KMG5_9PHAE	1.840e-31	96.49	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig18677	contig	Ecto-sp13_S_contig18677:53..223 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	1
Model size	171
Hectar predicted targeting category	no signal peptide or anchor
Exons	1
Cds size	171

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462957.4143772-CDS-Ecto-sp13_S_contig18677:52..223	1681462957.4143772-CDS-Ecto-sp13_S_contig18677:52..223	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig18677 53..223 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig18677.5865.1	prot_Ecto-sp13_S_contig18677.5865.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig18677 53..223 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig18677:53..223+
coding sequence from alignment at Ecto-sp13_S_contig18677:53..223+

protein sequence of mRNA_Ecto-sp13_S_contig18677.5865.1

>prot_Ecto-sp13_S_contig18677.5865.1 ID=prot_Ecto-sp13_S_contig18677.5865.1|Name=mRNA_Ecto-sp13_S_contig18677.5865.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=57bp
MATTASDIICHSCYEPGHIRRNCPKLKNRAKKKTKPAGATKWCSKHNTTS
HSNEECY

mRNA from alignment at Ecto-sp13_S_contig18677:53..223+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig18677.5865.1 ID=mRNA_Ecto-sp13_S_contig18677.5865.1|Name=mRNA_Ecto-sp13_S_contig18677.5865.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=171bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18677:53..223+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCAACGACCGCGTCTGACATCATCTGCCACAGCTGCTACGAGCCGGG
GCACATCAGGAGGAACTGCCCCAAGCTCAAGAACAGGGCGAAGAAGAAAA
CGAAGCCCGCCGGAGCTACGAAGTGGTGCTCCAAGCACAACACCACGTCC
CACTCGAACGAGGAATGCTAC

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18677:53..223+

>mRNA_Ecto-sp13_S_contig18677.5865.1 ID=mRNA_Ecto-sp13_S_contig18677.5865.1|Name=mRNA_Ecto-sp13_S_contig18677.5865.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=171bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18677:53..223+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCAACGACCGCGTCTGACATCATCTGCCACAGCTGCTACGAGCCGGG
GCACATCAGGAGGAACTGCCCCAAGCTCAAGAACAGGGCGAAGAAGAAAA
CGAAGCCCGCCGGAGCTACGAAGTGGTGCTCCAAGCACAACACCACGTCC
CACTCGAACGAGGAATGCTAC