mRNA_Ecto-sp13_S_contig1866.5857.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1866.5857.1
Unique NamemRNA_Ecto-sp13_S_contig1866.5857.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1866.5857.1 vs. uniprot
Match: D7FJ72_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ72_ECTSI)

HSP 1 Score: 332 bits (852), Expect = 4.000e-108
Identity = 163/171 (95.32%), Postives = 167/171 (97.66%), Query Frame = 1 
Query:  181 LGYEGEATSGAVVSSSLQQTVLHPDCMSGFCNLSSPVTMEEPAIRQGVYVTAAFVLVFYACIIGQASAKWKVAASYRARGERFERYYNVKDKAMLAWDRIVGNLLEQAMPFLTLFWLNIGLAALGATRHTGVAIAGWIYVVFRALYPVMWLSGGGGRAGPRSKILFVTPVI 693
            LG E EATSGAVVSS+LQQT+LHPDCMSGFCNLS PVTMEEPAIRQGVYVTAA+VLVFYACIIGQASAKWKVAASYRARGERFERYYNVKDKAMLAWDRIVGNLLEQAMPFLTLFWLNIGLAALGAT HTGVAIAGWIYVVFRALYPVMWLSGGGGRAGPRSKILFVTPV+
Sbjct:   83 LGREREATSGAVVSSNLQQTILHPDCMSGFCNLSGPVTMEEPAIRQGVYVTAAYVLVFYACIIGQASAKWKVAASYRARGERFERYYNVKDKAMLAWDRIVGNLLEQAMPFLTLFWLNIGLAALGATSHTGVAIAGWIYVVFRALYPVMWLSGGGGRAGPRSKILFVTPVM 253
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1866.5857.1 vs. uniprot
Match: A0A6H5JQ30_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ30_9PHAE)

HSP 1 Score: 275 bits (704), Expect = 9.510e-88
Identity = 135/145 (93.10%), Postives = 138/145 (95.17%), Query Frame = 1 
Query:  259 MSGFCNLSSPVTMEEPAIRQGVYVTAAFVLVFYACIIGQASAKWKVAASYRARGERFERYYNVKDKAMLAWDRIVGNLLEQAMPFLTLFWLNIGLAALGATRHTGVAIAGWIYVVFRALYPVMWLSGGGGRAGPRSKILFVTPVI 693
            MS F  LS PVTMEEPAIRQGVY+TA +VLVFYACIIGQASA WKVAASYRARGERFERYYNVKDKAMLAWDRIVGNLLEQAMPFLTLFWLNIGLAALGAT HTGVAIAGWIYVVFRALYPVMWLSGGGGRAGPRSKILFVTPV+
Sbjct:    1 MSDFGKLSGPVTMEEPAIRQGVYITAVYVLVFYACIIGQASAMWKVAASYRARGERFERYYNVKDKAMLAWDRIVGNLLEQAMPFLTLFWLNIGLAALGATSHTGVAIAGWIYVVFRALYPVMWLSGGGGRAGPRSKILFVTPVM 145
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1866.5857.1 vs. uniprot
Match: A0A6H5L6X6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6X6_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 4.690e-29
Identity = 63/146 (43.15%), Postives = 92/146 (63.01%), Query Frame = 1 
Query:  304 PAIRQGVYVTAAFVLVFYACIIGQASAKWKVAASYRARGERFERYYNVKDKAMLAWDRIVGNLLEQAMPFLTLFWLNIGLAALGATRHTGVAIAGWIYVVFRALYPVMWLSGGGGRAGPRSKILFVTP---VIDVLHALNLKNVRF 732
            P +  GV VT A+++++Y  I+ Q S K K+ A   A G++F+RY++ +D+ ML WDR VGN+LEQ  PFL+LFW NI L+  G   H  +A  GW+YV+ R+ YP++W +GGGG  G    I  VT    VI ++ A+N   V +
Sbjct:   28 PNVVHGVRVTLAYLVLYYFFIVAQGSMKRKLRAYNAAHGKKFDRYFS-RDRKMLGWDRTVGNMLEQMGPFLSLFWSNIWLSPYGGLPHAYIAALGWLYVLLRSFYPMLWFAGGGGSEGTSPTIWRVTMPMYVIILVFAVNAAIVIY 172
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1866.5857.1 vs. uniprot
Match: D7FJ57_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ57_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 1.210e-28
Identity = 63/140 (45.00%), Postives = 90/140 (64.29%), Query Frame = 1 
Query:  304 PAIRQGVYVTAAFVLVFYACIIGQASAKWKVAASYRARGERFERYYNVKDKAMLAWDRIVGNLLEQAMPFLTLFWLNIGLAALGATRHTGVAIAGWIYVVFRALYPVMWLSGGGGRAGPRSKILFVTP---VIDVLHALN 714
            P +  GV VT A+++++Y  II Q S K K+ A   A G++F+RY++ +D+ ML WDR VGN+LEQ  PFL+LFW NI L+  G   H  +A  GW+YV+ R+ YP++W +GGGG  G    I  VT    VI ++ A+N
Sbjct:  100 PNVVHGVRVTLAYLVLYYCFIIAQGSMKRKLRAYNAAHGKKFDRYFS-RDRKMLGWDRTVGNMLEQMGPFLSLFWSNIWLSPYGGLPHAYIAALGWLYVLLRSFYPMLWFAGGGGSGGTSPTIWRVTMPMYVIILVFAVN 238
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1866.5857.1 vs. uniprot
Match: A0A835ZE67_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE67_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 3.480e-20
Identity = 52/118 (44.07%), Postives = 68/118 (57.63%), Query Frame = 1 
Query:  289 VTMEEPAIRQGVYVTAAFVLVFYACIIGQASAKWKVAASYRARGERFERYYNVKDKAMLAWDRIVGNLLEQAMPFLTLFWLNIGLAALGATRHTGVAIAGWIYVVFRALYPVMWLSGG 642
            VT+ + A + G  VT A+V +F+     Q+  K      Y+ +GE+F  YYN  DK +L  DR VGN  EQ +PFL  FWL   LAA G +    V   G+ YVVFRALYPV+W + G
Sbjct:    3 VTISDQAFKGGAAVTLAYVALFHVLFFVQSKMKMLKRKEYKKKGEKFSSYYNSADKDVLMMDRTVGNFREQTLPFLATFWL--ALAARGESDCRTVIYRGFAYVVFRALYPVLWGASG 118
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1866.5857.1 vs. uniprot
Match: A0A5J4YNY0_PORPP (Uncharacterized protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YNY0_PORPP)

HSP 1 Score: 79.0 bits (193), Expect = 1.110e-13
Identity = 46/134 (34.33%), Postives = 72/134 (53.73%), Query Frame = 1 
Query:  301 EPAIRQGVYVTAAFVLVFYACIIGQASAKWKVAASYRARGERFERY-YNVKDKAMLAWDRIVGNLLEQAMPFLTLFWLNIGLAALGATRHTG----VAIAGWIYVVFRALYPVMWLSGGG-GRAGPRSKILFVT 684
            E  +  G  VT   V+ F   I+ Q S K+    + R + + F RY    +D+A+L  DR+V N+ E ++PFL+LFWLN+ L +  AT   G    +  AGW++ V R +Y  +   GG  G +GP+ ++   T
Sbjct:    2 ERIVHAGARVTVLHVVAFIFAIVVQTSLKFSAQRAARNQQKPFVRYSVQAQDRALLVADRVVANVTEWSVPFLSLFWLNLALVS--ATHSAGDGQHIVTAGWVFAVARVVYVFLCNFGGALGTSGPKPRVFIAT 133
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1866.5857.1 vs. uniprot
Match: A0A2E6VNJ6_9DELT (Uncharacterized protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A2E6VNJ6_9DELT)

HSP 1 Score: 73.6 bits (179), Expect = 7.100e-12
Identity = 53/122 (43.44%), Postives = 71/122 (58.20%), Query Frame = 1 
Query:  322 VYVTAAFVLVFYACIIGQASAKWKVAASYRARGERFERYYNVKDKAMLAWDRIVGNLLEQAMPFLTLFWLN-IGLAALGATRHTGVAIAGWIYVVFRALYPVMWLSGGGGRAGPRSKILFVT 684
            ++VT  +VL++Y  +      K K+   YRARGERF+RY+  +D  MLA DRI  NLLE    FL +FWL  I ++A  AT       AG IYV  RALYP  ++ G   + G   ++LFVT
Sbjct:   11 IWVTLVYVLLYYIFMTHGLRVKVKLFKDYRARGERFDRYFG-QDPEMLAADRIQLNLLEHMPAFLVIFWLYAIVVSAYWATW------AGAIYVGLRALYP--FVLGRELKGGIPLRLLFVT 123
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1866.5857.1 vs. uniprot
Match: A0A7S2X5Z2_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2X5Z2_9EUKA)

HSP 1 Score: 60.8 bits (146), Expect = 8.100e-7
Identity = 43/107 (40.19%), Postives = 58/107 (54.21%), Query Frame = 1 
Query:  322 VYVTAAFVLVFYACIIGQASAKWKVAASYRARGERFERYYNVKDKAMLAWDRIVGNLLEQAMPFLTLFWLNIGLAALGATRHTGVAIAGWIYVVFRALYPVMWLSGG 642
            V VT  +++++   I  Q  AK    AS R   E+FER+ +  D+     DR VGN LEQ   FL   W++      G     G AIAG+IY+ FRA++PVMW  GG
Sbjct:   29 VLVTLLYLILYDMSIWNQIFAKI-AQASKRGGMEKFERFDHT-DRHWEMADRTVGNFLEQTPFFLGFLWIHALFENAG-----GAAIAGYIYLGFRAMFPVMWSVGG 128
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1866.5857.1 vs. uniprot
Match: A0A7S3Z8I1_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z8I1_9EUKA)

HSP 1 Score: 57.8 bits (138), Expect = 4.940e-6
Identity = 35/121 (28.93%), Postives = 61/121 (50.41%), Query Frame = 1 
Query:  328 VTAAFVLVFYACIIGQASAKWKVAASYRARGERFE-----------------RYYNVKDKAMLAWDRIVGNLLEQAMPFLTLFWLNIGLAALGATRHTGVAIAGWIYVVFRALYPVMWLSG 639
            V+ A++ + Y  + GQ++A +    + RA+GE                    +Y     +  LA  R VGN++EQA+PFL   W++    +         A+AGW+++ FRA+YP+++L G
Sbjct:   47 VSVAWISLMYMFLYGQSAAVFYTYKNTRAKGESKRLVEGKDGEAAPPSFAAIKYRGKGSRINLAASRTVGNMIEQALPFLLSLWMHAIFVS-----PDNAAVAGWVWLGFRAIYPLVFLKG 162
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1866.5857.1 vs. uniprot
Match: A0A6T7FBR8_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A6T7FBR8_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 5.950e-5
Identity = 37/121 (30.58%), Postives = 57/121 (47.11%), Query Frame = 1 
Query:  295 MEEPAIRQGVYVTAAFVLVFYACIIGQASAKWKVAASYRARGERFERYYNVKDKAMLAWDRIVGNLLEQAMPFLTLFWLNIGLAALGATRHTGVAIAGWIYVVFRALYPVMWLSGGGGRAG 657
            M    I+    +T  F  ++   ++ Q   K ++   ++A+G+ F RY       ML  DR+V NLLE ++ FL+  W    LAA G        IA W YV  R LY ++  + G  + G
Sbjct:    1 MTSHDIQNAARITVVFSTLYMLTLVNQILTKKRLFQQFKAQGKSFHRY---SAPEMLNADRLVANLLEWSLVFLSPLW---SLAATGHLSEAATKIA-WTYVGVRGLYCILVTTFGVNQNG 114
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1866.5857.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FJ72_ECTSI4.000e-10895.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JQ30_9PHAE9.510e-8893.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6X6_9PHAE4.690e-2943.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJ57_ECTSI1.210e-2845.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZE67_9STRA3.480e-2044.07Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A5J4YNY0_PORPP1.110e-1334.33Uncharacterized protein n=1 Tax=Porphyridium purpu... [more]
A0A2E6VNJ6_9DELT7.100e-1243.44Uncharacterized protein n=1 Tax=Myxococcales bacte... [more]
A0A7S2X5Z2_9EUKA8.100e-740.19Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A7S3Z8I1_9EUKA4.940e-628.93Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A6T7FBR8_9STRA5.950e-530.58Hypothetical protein n=1 Tax=Attheya septentrional... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1866contigEcto-sp13_S_contig1866:5383..14178 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score336.3
Seed ortholog evalue1.5e-89
Seed eggNOG ortholog2880.D7FJ72
Model size1587
Hectar predicted targeting categorymitochondrion
Exons6
EggNOG free text desc.MAPEG family
EggNOG OGs2EA41@1,2SGDD@2759
Cds size897
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1866.5857.1prot_Ecto-sp13_S_contig1866.5857.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1866 5383..13488 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462956.688618-CDS-Ecto-sp13_S_contig1866:5382..55611681462956.688618-CDS-Ecto-sp13_S_contig1866:5382..5561Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1866 5383..5561 +
1681462956.7020354-CDS-Ecto-sp13_S_contig1866:5906..59461681462956.7020354-CDS-Ecto-sp13_S_contig1866:5906..5946Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1866 5907..5946 +
1681462956.7126622-CDS-Ecto-sp13_S_contig1866:10860..110671681462956.7126622-CDS-Ecto-sp13_S_contig1866:10860..11067Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1866 10861..11067 +
1681462956.7219672-CDS-Ecto-sp13_S_contig1866:11470..116651681462956.7219672-CDS-Ecto-sp13_S_contig1866:11470..11665Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1866 11471..11665 +
1681462956.7320354-CDS-Ecto-sp13_S_contig1866:12079..121501681462956.7320354-CDS-Ecto-sp13_S_contig1866:12079..12150Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1866 12080..12150 +
1681462956.7415926-CDS-Ecto-sp13_S_contig1866:13283..134881681462956.7415926-CDS-Ecto-sp13_S_contig1866:13283..13488Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1866 13284..13488 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462956.751689-UTR-Ecto-sp13_S_contig1866:13488..141781681462956.751689-UTR-Ecto-sp13_S_contig1866:13488..14178Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1866 13489..14178 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1866.5857.1

>prot_Ecto-sp13_S_contig1866.5857.1 ID=prot_Ecto-sp13_S_contig1866.5857.1|Name=mRNA_Ecto-sp13_S_contig1866.5857.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=299bp
MFVEAQCSPWRRVTSQAFLSAGARDRRNSALQLPAAAAACAAAAAAAGVV
TENHLIFRVHLGYEGEATSGAVVSSSLQQTVLHPDCMSGFCNLSSPVTME
EPAIRQGVYVTAAFVLVFYACIIGQASAKWKVAASYRARGERFERYYNVK
DKAMLAWDRIVGNLLEQAMPFLTLFWLNIGLAALGATRHTGVAIAGWIYV
VFRALYPVMWLSGGGGRAGPRSKILFVTPVIDVLHALNLKNVRFSPEFGA
PWWYSHCPTVCTLETRDRCSASLPVPGLCVVAARQLHLNFKLSFCPGT*
back to top

mRNA from alignment at Ecto-sp13_S_contig1866:5383..14178+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1866.5857.1 ID=mRNA_Ecto-sp13_S_contig1866.5857.1|Name=mRNA_Ecto-sp13_S_contig1866.5857.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=8796bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1866:5383..14178+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCGTCGAGGCACAGTGCAGCCCATGGCGCCGAGTGACGAGCCAGGC
GTTTCTCTCCGCTGGAGCAAGGGATCGGCGCAATTCTGCTCTCCAGTTGC
CTGCTGCCGCTGCTGCTTGTGCTGCTGCTGCTGCTGCTGCAGGTGTCGTG
ACAGAGAACCACCTGATCTTTCGTGTTCAGTGAGAAAAATGAACACTGAA
CACACACCAGGCGGACACACAGGAGCAACACCGTATTACATTTGCGTTGA
ATAAGTCCCTTGCTATTACGCAGAGCGAGAGAGGAAAGGCCGGTGGGTAT
GTCTGTGTCTCTCTCCTCTTCCAACGCTGCTGCTGCTGCTGTATTCTTTC
TAGCTCTCCCTGTCCCTGTCCGGTTCTCCTTGCTATTCGGGCAATCGGGC
GGCAGAGATGCGCCGCTTGTGATGTTAATATTACGCCGCACGCTGTGACA
CCTTTGTCACTCGTCAATCTTCGTCCACACGCGCCTGACACAGCACTGCC
CCGTTTCTACCCGTCTTTCTTCAGCCTCGGATACGAAGGAGAAGCTACGA
GTGGTGCTGTTGTGGTGAGTTGTGATAGAGAACCGTGTCAGAGGGAAGTG
CATACGTGATCGCTAAGAGCAGCATCGGAACGGAGAACAGAACTGAACTA
TAAATTGCACGCAGAGGAAGGAGGGCGGAGTATGCGCCTGCTGTTGTTGT
GGACGGAGTAGGCTATTCTAGTGGCACCTGAGTACAACGGGCTCAAGAAG
GAGATACAATCCGCGTGTAAAGAGCAAGAGCATTATTTTGGCACATGATG
CAGCGGGGAAGTTGTGTTATTTTTCTACCGCCCATGCGTAAATTTACGTG
ATTCCTCCGCAAGCGATTGGCGAGGAACGCCGCATTCATTTGATATTCTG
CTACGCCTCTCACTGCTGTAGTGTTGATATAAAATTGTGCGTATTCTTCT
ATCATGCCTTGCGCACGCATAAAGACGCGAACACCTCGGTTCCTGCCAAA
GCCGTGAATTTTTCCCGTGGACACAGCGGTAATGGGGAAACCCGTTATCC
AGAGAGAGGGCAGATGGAAGTCGGGTATGGACACGTACAAGGTGTACACC
CGCAATAACATAGAAGACCAGGGCTTTGCACGGAGTAGAACCGCTCCGCG
GAGAGGTTTTTATTTTCTTTTAGGTTCCACGGAGCGATTTTTTTAAGTTG
AAAATATTACGGAGCGGTGCGGAGCGGTTTATCCGAGGGCAAAAGTCTCA
CGGAGCGGAGCGGTTTATCCGTAGTGCGGATTATTTCACGGAGCGGTTTC
GTTTACTCCGTAGCATCAACCGCGCGAAACCGTGGTGTTGAGCACGGTTT
TCCGTCAGAAAAAAACGTCGAAACCGCACGGATACCCGTACAAAATCGAC
GGAGTACCTGCAATTTCGTGAAAAACATTGGGTTCGGTACACCGAAGGCC
GATTTTACCGCACGGTGTGCTGTGGTTGGAGGCCGCCGGTGACATCGTAT
GCGTCCTCGCCGCTAGGACAGCACAAACAGCACAAACAGCACAAAAAGCA
AAAAGCCAGCTCTAAATTTATCAATTTTATTATTTAGAAAATAATCATTC
CCCACATCGATACCTCCTCCACTCATGCCATACGTTCCTCCTACACGTTC
AACAGGAGATAGTTCCTCATTCGCCTGTCGTTGAAACTTGCCAGGACTGT
AGCACTCTGGTAACATCAGGTGTCCTGTGTATTCATCCAAATACACACGC
CCCTATTTCACTCAGTCAGTCAGATTCGACATCGACAACCACTTGCTGCT
CTCCCGCACGAGCGGCTTGGACAGATGCAGCTTTAACCTTCCCAACAGAC
TGCGTTGCAAGCATCTTTCCCAACTCCATGTGCAACTTCATGATCTCGGG
AATAAAATGGGGGTTAGACATGAGGAACATCACCATCTGGACACAGTCGG
GCATCATCGACTGCCAAAGATTGTTGCACACGAATACCAGCCCCGACAAC
TCCCTCTCTGATTGGCAACTAGTTAGTGCTGTCAATGCAATGGTACATGC
GAGCAAGCATGGACAAGATGGGGAATTGCGCAGCAGAAACAACATTTCCG
TGGGGGCCATGACGCGGGATGCCGGCATCTCGCGAGAAACCGAGGACGTG
ATAGTGTTGGTATGTGGAACGGACTGCTGTTGTTGTGCGTGTTGGCACAG
CTGTAATGTTATTTGTTGTGTGGCTGCTGTGAAAGTAGAACAGATAAAAG
GAAAGAATGCCGTGACTCCATGGGAAAAAACCGTGACTCCGTGGGAACAC
CGTGACTGTATAGCGCGGTTTCATCCGTGCTTGTGTGACGGAGCAGCTCA
AACCGCTCCGTGAAAAAACCGCTTGTACGGATTTTTTGGAAATCCCACGG
AGCGGAGCGGAGCGGTTTATCCGAGGGCAAAATTCTCACGGAGCGGAGCG
GTTTTTTCTATCATGTCACGGAGCGGAAAGGAGCGGTTTAATCCGCTCCG
CTCCATGAAAAAAAAAGCTCCGTGCACAGCCCTGAAATACACTTGTGGCA
CGCGCCGCGAGCTTCGGCACAGCAGTCCTTCATTAGGCTCGGCGTTCTTG
GCTAGCAGGAGAGTCAAATGTCTGTACGGCTGTTACTACACTACTGTAAG
ATGAAATACCTATAAATCCCTTGGGGAAAGACTATCTCGGAACGTTATTC
CCCAATAAAATATCCACGGGGACCCACGAAAGAGCTGCCGCACAGAGCAG
CAAAGCAGAAAAACGCGAGGAAGAATTTCCTCCTGTTCCGGTGGGTGGGC
GCCGAGCTGTCATCCACCCTCATCGTACATATGCCTTTCTCAATACCCAG
CTGCGCCACCGCCCCCGTGGTCTCCCGGCCCGTCGATTCCGCTCAACCGG
ATCTGAAAGGAAAACCAGCCGATAGTTTTCCACAGCAGCACACAGTGCAA
TGATATACAAATATGCACAGCTTGAGTTGTTTTCTTATGTAGTGTGTTTT
ATCTTCTTTGGTGCGTGCCTTGATTTCGACTGAGATTACGAGTTTGGAGC
GGTAGGCTCTAGAAGTTCCTTTGTTGAACTTTCAAGCCCTTTGCGTGTGC
ACCCTGTTTTTTCCTCCTGGACTCGTGATTTTACCTACCTCAAGATCGTA
TTCCCCGTGCATCAGTGCTACCCTTCTCTTGGTCTAGTTTTCTCTGTTTT
TACCAGGGATGTTCACGGTGTAACACCGCACCGCGGTGCGGTTTTTTGTT
TCTTGACATGGTCACGGTGCGGTGCGGTGCGGTGCGGTTTTTTTCACCTC
GATATTTGACGGTGCGGTGCGGTGCGTTTTTTTTATCTCGAAATTTGACG
GTGCGGTGCGGTGCGGTGCGGTTCACCACTGCACGGTTTTTGTGACGGTG
CGGTTTCTTCTACCCCGTGACACAAAACCGCGCGAAACGCGACCTTGTCG
GCGGTGTACCGTCGAAGAACACCGCGGAGAATACTACGGTTGTCCGTAAC
AAAATGACGGGGTCTCCATGATTTTTTTTCGTGGAATACGATTTTTTTTT
TTTTTCTTTACTTCAAATCAGCGCTCTCAGCACGAGTGCCGTTTACTCCA
ACCGGTGGCCACACAGAAGAACCCCTCTCTACCTTCCCCTCCTGCGGTAC
TTCGCCTTCAATTCTCAATGCGAGAAGAGTTCAGCACTCTCTTCCCTCTG
TGTACACACGAAGAAGCGCTATCCACTTGGCCAGGAGCGGAAGCGAGAGA
AAAACTCACTTTGCAAGAGAAGCTCGCCTGCGCCGGGATTCAAACCCCTG
ACCTGACCTCTAGAAGGTTACGAGGCTACCAACTAGACCACCGGGGTTAA
ACGTTAGGTTTAATCCAATCAAATGAGGCCGACACGACAAATCCCGCGGC
TTGCGATCAGAAAACCCGAAAACCCCAGATACAGGAGAAGCTGCTGATCA
TTTTCTTCATTTTCCCAGTCACCATACGTTCCTACATCACGAGCTACATT
CCTGACTTGCTTCAACTACTACTACTGTTGTTGGAACATATATGCGAACA
TTCGAATATGCTAGAAACAATGAAGAAAAAATCTGGCAGCACCACCAGGC
AGGGGGCTCATGCCTGCAACGGGAATGTGTTGACGGCGGTGCGTTGCACG
CTGCGAACTGTTTTAGGCGTGCCCCCAGTTTGCGCGGCATCAGCAGCACC
AGCAGAGGTGTCGTAGAACCACCGGTAGAAGGAGATGGACGCGTGGCGAC
CACCTCTGCAAGAGGCTGGTCGCCATCGTCGGGTGTGACTCCATCAGAGA
TGGGCGGAGTTGTGCACGGATCGTATCGCAGTGAGTGGCGGTGTGTGTGT
GTGGTATGGGGACACGGTGTTGCGTGTGCGCTGGTTCAAAAAAAAAAAGA
TCAGTGTTGAATGTTCCTTGTGTGTTTGTGTCTCCACGACAAAACCGTGC
CTTACCTGCGGTTTTTACCGCGGTTTACTGCGGTTTTGATCGCGGTGTAC
TGCGGTTTTGGCTAAGGGGTGGGGCGAACCGCACCGTGGTAAAACCGCAA
CTACGGTTGTTTGTGAATCCTTACGGTGCGGTGCGGTGCGGTGCGGTTCT
TTCATCTCGAAATGTGACGGTGCGGTGCGGTGCGGTGCGGTTTTGTGCAT
CTCGATATTTGACGGTGCGGTGCGGTGCGGTGCGGTGCGGTTTAACCGCA
CCGCACCGCACCGCACCGTCGAGAGAAACCGCACCGTGAATATCCCTGGT
TTTTACCCTCTGTGGGGAGTAGATCGTGACTACACAAGATCTTCGTCTCC
TCGTCTGCAGTGAAAGTATAGAGGAGGGCGTACAGGAAAAATATCAGCCT
GTTGAGTGAAACCAACGTCGACATCACACCCACACCCACGAGCGTCCACC
AGTGCACTTCCAACGAGTTCATGACATAGAAACACAAAAAGAGGCTAATA
GTGATACCCGCCCTTCCTCACCTGGACCCGACAATGTTAAGATGCCCCTT
GTGGCTTCGCGATCACCTCGCCCGATAATTTCGGGCGTGAACGCTTGGGG
GTTCCAAGACTGCCACGAGACGACACCGACGAGTTATCTTCTTTTATCGT
CAGGGTAGAATCCGTCCCTGGGGGTAAGCGGTGGACCTGGAGACCTTTGA
ATCGCTTGAATCAACACGTGGTGTATGTACTACCGAGATAATGGTTTTGG
AAGTACGCTGCGCGAGAATGGTTTGGTTCACTTGAGTCCAAATACTACCG
CTGTGTTCTTGTTCACGTCCGAGCGCACTTCTACGGTAGCGTGCCCTAAC
GTACCGTGATAACTGTGCCATTGTTAGGCATTAGGCACGACCGAAACTAG
TTTTCCCAGTGATATTACGCGGATGGCGGGCGCAAACGTTTCATCACGTG
AACCCACAATATCGACCACTAACCGCAACTGACAAACCCATCAATTTGCT
CTTTGTTCGCGTGTCACCCCGTCTCCAGTCCTCAAGCCTCCAACAGACAG
TCCTGCACCCCGACTGCATGAGCGGCTTTTGCAACCTGTCCAGCCCTGTC
ACGATGGAAGAGCCCGCGATACGCCAAGGGGTTTACGTCACGGCGGCCTT
CGTCTTAGTTTTTTACGCTTGCATCATCGGGCAAGCCAGCGCCAAGTGGA
AGGTTGCAGCTTCTTACAGAGCGCGCGGCGAAAGGGTGCGTGTGGGTAGA
CCGTGACAAGTTGGAAGTGTCCCTAACTGGTCGTGCGTAGCACGGGATTT
ACACGTGCGAGTCGTGAAGTGGTTGTGTCAGTTGGTGTCGAGCTTAAGGA
TAATCTTTACAAAGACGCAGCGTCCAGTTGTAGGTGCGACAGGGTGTTAG
TGGTACGCCCGCCTTGTGGGATGGATACATGCACCAAGAAGAAGAGAGAG
TTTGACTGAGTAGACTGCCGGCTTGGTGTTATGCACCACCCCCAAGCGAC
TTTCACACAATCTGGGTCTGGAACATCGGCGGCGGCCACAGTTAGTTTGG
ATCGACACGACCCCCCTCCCTGTCGGCAACTTGCTTCCCCCACCCTCGTG
CACCCCTGTCATGTTTGCGAATCGGCGCCAATATTTAGTTCGAGCGGTAC
TACAATGTCAAGGACAAGGCTATGCTCGCCTGGGACAGGATAGTGGGCAA
CCTTCTCGAGCAAGCGATGCCGTTCTTGACTCTCTTCTGGCTGAACATAG
GCCTTGCTGCCCTCGGGGCGACGAGGCACACCGGTGTCGCCATCGCCGGT
TGGATCTACGTGGTGTTCCGGGCCCTCTATCCCGTAAGCACTTCGATCTG
CTCGTTCGCTCCAACCAACACATGGGTCCAGAGCGCAATAGGTTTGATTT
TTTCTAAGTTGGGGCACCCACCACAGATCCTCATGATTGTTAGTTGATGT
CTCTCTCGTGAGGTATGATAGGTAGTCCCCGTTCCTGGCTTGGCTTGGTT
TCGAGGTTCTACACGTGCAATTTTCAGACAAGGAATGCCATCCCCGCTCG
AACCGTCTACACTTGCCGTCTTAGCAACGTCCCCTTTGCAAGAACTATTT
CCAGCAACTACTGCCGTCTTTCGGCGGCTGGCCTTGCTTCATGCCAACAT
GCCAGCCGCGTCTTTGTTGGTTATTTGTATAACCACTAGGTGGAGTATTC
GTTTCTTGCATGTGAACCCTATCCGACTCGCGACTTGCCCTGTTCAGGTT
ATGTGGCTCAGCGGAGGAGGCGGGCGGGCGGGGCCCCGTAGCAAGATTCT
GTTCGTGACCCCTGTCATGTGAGTGACCCTCAACTCACGCCTCTAATGCT
TCGGATGAGTGGTGATACATAAGGGCTTCCTGCAACGGTGCTTACCAACG
AACACCATCATGCAGCAGTAGGAGCATGCCCACCTCGGGTGGTTTGATTT
CGCCTGCACGATCACTGAGGGATGGGCTGGTTACGGTACAAGGGTTTCGG
ACGCAGAAGACTATTTCCAATCCGGAGGTGCGCGAGAACATTACCGAAAC
TAAAAGGTAAAGCCAAAACAAAATGGGACCTGCACGTGAGCTTTTCTCTT
CCTTCAAGATCCTTCTGTTGGAATTTCGCTGCTTGTTGCAGCAGTCGGAA
AAATGGCCAGAATAAAGACTTGAGACTTGAGCGCTGTGGAGCGGTGCTTT
CTCCATGCAAACACACACACGCTCTAAATGGCAACGGAGAACCAGACAAC
AGCGTCTCCAACGTTAGAACAGTATAAGGTAGTGGCCGTAGCATCACAAT
ATGTCTCAAAATCCGGTGGGAATAGGCACGTTTTCCGAGCACAGGAGCGT
GGATACAGCGCTGGGTCGGGAGGAGGAGAGAGGGAGAGAGAACTGGTCAC
CCAACAACGCCATGATAAGAACAGACGACTTGCACTGTCAAACAGTCATG
TTCGTGGTCAGAACAACAATTTGAAATTCAAACGTATTTGTCGTCCAGTA
ACCGCACACAGCCCTGGCACGGGCAGAGAAACGCTGCAGCATTCCCGCGT
TTTCAGGGTGCAAACGGTAGGGCAGTGACCGTAGCAATGATTCCTCAAAC
TCCGGTGAGACGAGGCACAGTTTCGTGGTGCACGGGGCTGGTAGTGAAGC
AGGGCGAGCGTGGAGAGCAGATTACTCCGCCGCTTGCTGCTCGAAGGGTA
TTGCTCGCGCCCTACACTTCAAGGCCCTACCCAGAGCCGCGACATCGCAC
GCTTCCCTGATTCCGTCATCTGACGTTGTTTGTCGGTATTGCGCCCTGTT
GGGTTCCAGCGATAGAGGCTTTCATCCCACCGTGTCTTCTTAGAGAAGGC
AAGTATCGTTCGTTGTATTGATCTCGCGGCAGTGTTGTGTGACCTGCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCGCCTCTTCCCCGATCCA
GCGATGTATTGCACGCTCTAAACCTGAAGAATGTGCGCTTCTCACCGGAG
TTTGGGGCACCATGGTGGTACAGTCACTGCCCTACCGTTTGCACTCTGGA
AACGCGCGATCGCTGCAGCGCTTCTCTGCCCGTGCCAGGGTTGTGTGTGG
TTGCTGCACGACAATTACATTTGAATTTCAAATTGTCGTTCTGCCCAGGA
ACCTGACTTTTGACAGTGCAAGTCGTCTGTTATTTTATCATGGCGTTGTT
GGGTGACCAGTTCTCTCTTCCTCTCTCCTCTCCCGACCCAGCGCTGTGTG
CACGCTCCTATGCTCAGAAAACGTGCCTATTTCCACCGGATTTTGAGACA
TACGTAATGCTACGGCCACTACCTCATACTGGTCGCACGCTGGAGACGCA
GTTGTCTGGTTCTTCGTTGCCATTTAGAGCGTGTGTGTGTTTGCATGGAG
AAAGCACCGCTCCACAGCGCTCAAGTCTCAAGTCTTTCTTCTGGCCATTT
TTCCGACTGCTGCAACAAGCAGCAAAATTCCTTTGGAAAGATCTTGCGTT
TTTGACGAACAGCTTACGCCGAGCTTCCAAAATGGCGCGAACCTCCTTCC
TCGAAGCACTGTAGCCTTTTGAGATAGGATCGAGAGTACCTGCCTCCTAG
GTGGGGCAAGCCCTACGGTATATGTGTGCATTCTCCCACTCCGATGGTGT
TTCGAGTACTTGAATCAGTCCATCGGTGGGCGTTGTGCATCACCGTGGGC
TCCACTAGAGCCGGTTCGCAGACACCTATGCTGGAACGTGACTTTCCGTT
GTGATGAAATCGGTGAGGAAATCGTAGCAGATGCGAGCACTTGCCGCTGG
CATGCCCTTGTGCTTGTTGAATTGTCCGATCTACTACTTCTATCCG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1866:5383..14178+

>mRNA_Ecto-sp13_S_contig1866.5857.1 ID=mRNA_Ecto-sp13_S_contig1866.5857.1|Name=mRNA_Ecto-sp13_S_contig1866.5857.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=897bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1866:5383..14178+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCGTCGAGGCACAGTGCAGCCCATGGCGCCGAGTGACGAGCCAGGC
GTTTCTCTCCGCTGGAGCAAGGGATCGGCGCAATTCTGCTCTCCAGTTGC
CTGCTGCCGCTGCTGCTTGTGCTGCTGCTGCTGCTGCTGCAGGTGTCGTG
ACAGAGAACCACCTGATCTTTCGTGTTCACCTCGGATACGAAGGAGAAGC
TACGAGTGGTGCTGTTGTGTCCTCAAGCCTCCAACAGACAGTCCTGCACC
CCGACTGCATGAGCGGCTTTTGCAACCTGTCCAGCCCTGTCACGATGGAA
GAGCCCGCGATACGCCAAGGGGTTTACGTCACGGCGGCCTTCGTCTTAGT
TTTTTACGCTTGCATCATCGGGCAAGCCAGCGCCAAGTGGAAGGTTGCAG
CTTCTTACAGAGCGCGCGGCGAAAGGTTCGAGCGGTACTACAATGTCAAG
GACAAGGCTATGCTCGCCTGGGACAGGATAGTGGGCAACCTTCTCGAGCA
AGCGATGCCGTTCTTGACTCTCTTCTGGCTGAACATAGGCCTTGCTGCCC
TCGGGGCGACGAGGCACACCGGTGTCGCCATCGCCGGTTGGATCTACGTG
GTGTTCCGGGCCCTCTATCCCGTTATGTGGCTCAGCGGAGGAGGCGGGCG
GGCGGGGCCCCGTAGCAAGATTCTGTTCGTGACCCCTGTCATCGATGTAT
TGCACGCTCTAAACCTGAAGAATGTGCGCTTCTCACCGGAGTTTGGGGCA
CCATGGTGGTACAGTCACTGCCCTACCGTTTGCACTCTGGAAACGCGCGA
TCGCTGCAGCGCTTCTCTGCCCGTGCCAGGGTTGTGTGTGGTTGCTGCAC
GACAATTACATTTGAATTTCAAATTGTCGTTCTGCCCAGGAACCTGA
back to top