mRNA_Ecto-sp13_S_contig18653.5855.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18653.5855.1
Unique NamemRNA_Ecto-sp13_S_contig18653.5855.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18653.5855.1 vs. uniprot
Match: D8LME4_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LME4_ECTSI)

HSP 1 Score: 172 bits (435), Expect = 5.340e-48
Identity = 80/81 (98.77%), Postives = 81/81 (100.00%), Query Frame = 2 
Query:    2 SGMFPGVWDSLGFLPNRDPMFAKEALDVTVLIDELDASLTRSQYSTIMSIVMDNFPEPWSVCPPVIEWPKRDPEVSQGVCR 244
            SGMFPGVWDSLGFLPNRDPMFAKEALDVTVLIDELDASLTRSQYSTIMSIVMDNFPEPWS+CPPVIEWPKRDPEVSQGVCR
Sbjct:  861 SGMFPGVWDSLGFLPNRDPMFAKEALDVTVLIDELDASLTRSQYSTIMSIVMDNFPEPWSICPPVIEWPKRDPEVSQGVCR 941
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BLAST of mRNA_Ecto-sp13_S_contig18653.5855.1 vs. uniprot
Match: A0A6H5K463_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K463_9PHAE)

HSP 1 Score: 171 bits (432), Expect = 1.360e-47
Identity = 79/81 (97.53%), Postives = 81/81 (100.00%), Query Frame = 2 
Query:    2 SGMFPGVWDSLGFLPNRDPMFAKEALDVTVLIDELDASLTRSQYSTIMSIVMDNFPEPWSVCPPVIEWPKRDPEVSQGVCR 244
            SGMFPGVWDSLGFLPNRDPMFAKEALD+TVLIDELDASLTRSQYSTIMSIVMDNFPEPWS+CPPVIEWPKRDPEVSQGVCR
Sbjct: 1852 SGMFPGVWDSLGFLPNRDPMFAKEALDLTVLIDELDASLTRSQYSTIMSIVMDNFPEPWSICPPVIEWPKRDPEVSQGVCR 1932
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18653.5855.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LME4_ECTSI5.340e-4898.77Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K463_9PHAE1.360e-4797.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18653contigEcto-sp13_S_contig18653:657..1440 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size248
Hectar predicted targeting categoryother localisation
Exons2
Cds size246
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462956.5503356-CDS-Ecto-sp13_S_contig18653:657..8521681462956.5503356-CDS-Ecto-sp13_S_contig18653:657..852Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18653 658..852 -
1681462956.5599794-CDS-Ecto-sp13_S_contig18653:1389..14401681462956.5599794-CDS-Ecto-sp13_S_contig18653:1389..1440Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18653 1390..1440 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18653.5855.1prot_Ecto-sp13_S_contig18653.5855.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18653 658..1440 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18653.5855.1

>prot_Ecto-sp13_S_contig18653.5855.1 ID=prot_Ecto-sp13_S_contig18653.5855.1|Name=mRNA_Ecto-sp13_S_contig18653.5855.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=82bp
VRDVSGGVGLARFLAQQGPHVRQGSPGRDRPHRRARRQPDALPVLHHHEH
RHGQLPGAVVRLPPGHRVAEAGPGGVARGVPG
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mRNA from alignment at Ecto-sp13_S_contig18653:657..1440-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18653.5855.1 ID=mRNA_Ecto-sp13_S_contig18653.5855.1|Name=mRNA_Ecto-sp13_S_contig18653.5855.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=784bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18653:657..1440- (Ectocarpus species13 EcNAP12_S_4_19m)
GTCCGGGATGTTTCCGGGGGTGTGGGACTCGCTCGGTTTCTTGCCCAACA
GGTGCGGGGAGGGGAAGAGAGAGGTTGCGATAGACGTGAGCGACAGAAGT
AGTTTCTTTCAGAAAATCTGCAACAAAATCGCAGAGAGACCACCGTTTTT
TTTTTTACCATGTGGTATTTATTTGTACCGTAGTGGTGCATGGTATATCA
TGCCAGTGCTACCTAGGGGGAAGGCGAGATCGTACAAAATACCATTTCCG
TCCCAGTGTTACCTTCCTCCTGTCTGTGTGGCCCCTGCTGATACGATGCG
TCACGTGTGGTAGGTGTAGACTGGCATCACAAGATATGGGGACGAATTTG
TCACACACAACACACAGGGTCGAACTAGCCGAAAAAGGCCAGAACGCCCC
TGCTGCGCTCTGGCACGCATGACCTCGAGGACTACCTGTACGGAAAGTTT
CGATACAAGTAAAACGTTGCACGACAGTGGATAACGAAACCGAACACGAC
AACGAAAAACGAGATTTTGTGACAAGATAATGGAAACAAAAACAACTACA
AAACGTTTTTTTTTTCTTTTCTTTTTTTTCACGGCCAGGGACCCCATGTT
CGCCAAGGAAGCCCTGGACGTGACCGTCCTCATCGACGAGCTCGACGCCA
GCCTGACGCGCTCCCAGTACTCCACCATCATGAGCATCGTCATGGACAAC
TTCCCGGAGCCGTGGTCCGTCTGCCCCCCGGTCATCGAGTGGCCGAAGCG
GGACCCGGAGGTGTCGCAAGGGGTGTGCCGGGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18653:657..1440-

>mRNA_Ecto-sp13_S_contig18653.5855.1 ID=mRNA_Ecto-sp13_S_contig18653.5855.1|Name=mRNA_Ecto-sp13_S_contig18653.5855.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=246bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18653:657..1440- (Ectocarpus species13 EcNAP12_S_4_19m)
GTCCGGGATGTTTCCGGGGGTGTGGGACTCGCTCGGTTTCTTGCCCAACA
GGGACCCCATGTTCGCCAAGGAAGCCCTGGACGTGACCGTCCTCATCGAC
GAGCTCGACGCCAGCCTGACGCGCTCCCAGTACTCCACCATCATGAGCAT
CGTCATGGACAACTTCCCGGAGCCGTGGTCCGTCTGCCCCCCGGTCATCG
AGTGGCCGAAGCGGGACCCGGAGGTGTCGCAAGGGGTGTGCCGGGA
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