mRNA_Ecto-sp13_S_contig18649.5851.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18649.5851.1
Unique NamemRNA_Ecto-sp13_S_contig18649.5851.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18649.5851.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18649contigEcto-sp13_S_contig18649:1230..3177 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size369
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-10_001620.2
Cds size348
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462956.2943602-UTR-Ecto-sp13_S_contig18649:1229..12491681462956.2943602-UTR-Ecto-sp13_S_contig18649:1229..1249Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18649 1230..1249 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462956.304205-CDS-Ecto-sp13_S_contig18649:1249..14991681462956.304205-CDS-Ecto-sp13_S_contig18649:1249..1499Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18649 1250..1499 -
1681462956.3285673-CDS-Ecto-sp13_S_contig18649:3079..31771681462956.3285673-CDS-Ecto-sp13_S_contig18649:3079..3177Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18649 3080..3177 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18649.5851.1prot_Ecto-sp13_S_contig18649.5851.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18649 1250..3177 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18649.5851.1

>prot_Ecto-sp13_S_contig18649.5851.1 ID=prot_Ecto-sp13_S_contig18649.5851.1|Name=mRNA_Ecto-sp13_S_contig18649.5851.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=116bp
TTAVEPRTAGCPAPRASISADIARKAISGASPRIVRPAGIAQTSTPESTR
TRSKEDNSSKHAPHTEHRYQRISPESQEAGPHRGKLPPGNSPFPGLECDL
QTYELTTRRRTVRAS*
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mRNA from alignment at Ecto-sp13_S_contig18649:1230..3177-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18649.5851.1 ID=mRNA_Ecto-sp13_S_contig18649.5851.1|Name=mRNA_Ecto-sp13_S_contig18649.5851.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1948bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18649:1230..3177- (Ectocarpus species13 EcNAP12_S_4_19m)
ACTACTGCTGTAGAGCCAAGAACAGCAGGATGCCCCGCACCAAGAGCATC
GATCTCCGCGGATATCGCCCGGAAGGCAATAAGCGGAGCTTCACCGAGGT
GTGCATGCCACCCCCCAGCTATTCGTCATTCGCAGGATTTCAGAGTAGCC
TCCAGATCTACGACCTCACCAATAGGCGGCGGGCGGTGAGAGCTTCTCGA
CACCCCACTACAATAGTTGGCCCCGTATGCGTTGCGATTCATGGGCTGTC
CCTGGTGCACGCCACTACTTTTGGCCGCAGACAAAGCGAACACGCCGCGA
AAAACTTGACAACAATTTGAAGCACTCAAACAAAGGAACATAACCACCAA
TACTGCTTACTGAACAGCAGCAGCTGGTGCAGAGCTCCTACTGCTGCGGC
AGCAAGCGCAAATTGAAGCACAGCCGTAATGCGGTGGGGACGCGGAGCAT
TTGTTTTCGGAACCCACGTAGGGCTCGAAGTACTTCGTTTGATTAGATAT
GCGGCAACGTACTCTAGCAGCGAGAGCTCAACGGCATGCTTCGCTACGGA
GCGTGGGAGATATCCTACCATCACCTATCCGCAGCTTTCGCACCGCCTGC
TGTTTCACAGCTGTTTCAAACCATCATGTGTCGACACGATCATAGCGTTC
TACTTCTGCTACAGCTCGAAATTCTGCAAGGATCAAAACACTCTTCAAAC
ACACCGTATCCGCCGCTCGTGGGCCAGTTTTTTGCACGGCTCTTCTCTCT
TCACCAGTCCTTTGGGGTGTTGGCTACAGACTCTCTGCAGGTCTGTCGAG
AGAACGCATATGCTGCCAGTAGGTCATGGTGGCCACGTTTTTCTTTTGTG
TTCATATTTTTTTATTCTGCCGAGTGTGTTAGCTCAGAAAGAGGTGTGAC
AATGACCTGTGAAAGCAAGATCCTATTGGCACCCTCGTATGTGGAGCATG
GTGGAGTGGCGCAGCCTCCAAGTCTCCAACATGTGCTGGTTTCGAACCAG
AACGCGGGAAATCATCGAACTAATCTATTGCTGTCGTACCTCTCAGAGTC
CAATCTTCGGCAGGGACATAAATGGTGTACATCTTCACGGAACGCCCCCC
TTGCGGTCCTGTTCCAGGCCCTGTGTGTATCGCGGTGGCTCGTCGAAGTG
AGGTGGTAGGATGCCGTAGGTCCCTTTCCCCTGCAGAGAAACGCCTGCTG
CAGAATCCCCGGGAGGTGGTTCCACCGCAAATAACTTGAAAAAATAATGC
GGCACCTACAAAATCATCCTGTTTTTCCGTATACCTTTGGGGCCACTGCA
GATGGACGCCGTTGTAGTAGCAAGGCCACGTTGCTTGACGCATGGAAGAA
TGCGGATGTGAAACTTCACAAGGAAGGGGGGTCGCCGACGTTCAAGTAGG
GTTCGATGATGTCAAACATAGGTGCCGTAACCCTGGCCATCGGTCAACAC
ATGTTTTCCACAAGTCTCGGTGACGGAGAAGGCTTGTGGAACAAGTGCAC
CGGCGCTTGACGCATAGATGATGGCGTCGTTAGAAGGCGGCCAGCGCGAG
AAATTAGTCTTTCCTGCTGTACGATAACCGACACAGGGAGATAATGAGCA
CAGCAGCACAACCCCCAACAGCAGCAGCCCCTGTTGTTCTCACATCTCAC
ACCCGCCTGCCTGTGGATGCGCACACAGGATCGTAAGACCAGCAGGGATT
GCACAGACATCAACACCCGAATCTACGCGCACCAGAAGCAAGGAGGACAA
CAGCAGCAAGCATGCCCCGCACACAGAGCATCGATATCAGCGGATATCAC
CCGAAAGTCAAGAAGCTGGGCCTCACCGAGGTAAACTGCCGCCCGGCAAC
TCACCATTCCCAGGGCTGGAGTGTGACCTCCAGACGTACGAACTGACCAC
GAGGCGGCGTACGGTGAGAGCTTCTTGACACCCCACTACAATAGTTGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18649:1230..3177-

>mRNA_Ecto-sp13_S_contig18649.5851.1 ID=mRNA_Ecto-sp13_S_contig18649.5851.1|Name=mRNA_Ecto-sp13_S_contig18649.5851.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=348bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18649:1230..3177- (Ectocarpus species13 EcNAP12_S_4_19m)
ACTACTGCTGTAGAGCCAAGAACAGCAGGATGCCCCGCACCAAGAGCATC
GATCTCCGCGGATATCGCCCGGAAGGCAATAAGCGGAGCTTCACCGAGGA
TCGTAAGACCAGCAGGGATTGCACAGACATCAACACCCGAATCTACGCGC
ACCAGAAGCAAGGAGGACAACAGCAGCAAGCATGCCCCGCACACAGAGCA
TCGATATCAGCGGATATCACCCGAAAGTCAAGAAGCTGGGCCTCACCGAG
GTAAACTGCCGCCCGGCAACTCACCATTCCCAGGGCTGGAGTGTGACCTC
CAGACGTACGAACTGACCACGAGGCGGCGTACGGTGAGAGCTTCTTGA
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