mRNA_Ecto-sp13_S_contig18647.5850.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18647.5850.1
Unique NamemRNA_Ecto-sp13_S_contig18647.5850.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig18647.5850.1 vs. uniprot
Match: A0A6H5JCT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCT2_9PHAE)

HSP 1 Score: 519 bits (1336), Expect = 3.580e-177
Identity = 303/309 (98.06%), Postives = 306/309 (99.03%), Query Frame = 1
Query:    1 QTGKAAVIVPVGATEQHGPNGLIGTDHMTAEAVARGVCEVTGAILAPTINYGMSHHHESFPGTVTLRPATFVAVVRDVAASLSGAGFTHVLFVNGHGGNVGPAFKAFADFAAEQQQAREMXXXXXXXXXXXXXXXXDSTARVKLISWYAGRESSTLAKELYGGEVGQHATPDEVAVTQHLFPESVKSGVELDPAAIQVAKDLGGMTKRIKDAETGLSVMDVQDFRRRFPDGRMFSNPALAIPEHGRRLLQAAVRDATDALGKFLSGQDVVEEAEAKAKRXXXXXXXXXXXXXXXXTEGK-KAGKTSFTP 924
            +TGKAAVIVPVGATEQHGPNGLIGTDHMTAEAVARGVCEVTGAILAPTINYGMSHHHESFPGTVTLRPATFVAVVRDVAASLSGAGFTHVLFVNGHGGNVGPAFKAFADFAAEQQQAREMXXXXXXXXXXXXXXXXDSTARVKLISWYAGRESSTLAKELYGGEVGQHATPDEVAVTQHLFPESVK GVELDPAAIQVAKDLGGMTKRI+DAETGLSVMDVQDFRRRFPDGRMFSNPALA PEHGRRLL+AAVRDATDALGKFLSGQDVVEEAEAKAKRXXXXXXXXXXXXXXXXTEGK KAGKTSFTP
Sbjct:  111 ETGKAAVIVPVGATEQHGPNGLIGTDHMTAEAVARGVCEVTGAILAPTINYGMSHHHESFPGTVTLRPATFVAVVRDVAASLSGAGFTHVLFVNGHGGNVGPAFKAFADFAAEQQQAREMXXXXXXXXXXXXXXXXDSTARVKLISWYAGRESSTLAKELYGGEVGQHATPDEVAVTQHLFPESVKYGVELDPAAIQVAKDLGGMTKRIRDAETGLSVMDVQDFRRRFPDGRMFSNPALATPEHGRRLLEAAVRDATDALGKFLSGQDVVEEAEAKAKRXXXXXXXXXXXXXXXXTEGKTKAGKTSFTP 419          
BLAST of mRNA_Ecto-sp13_S_contig18647.5850.1 vs. uniprot
Match: D8LCG6_ECTSI (Creatininase subfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCG6_ECTSI)

HSP 1 Score: 503 bits (1295), Expect = 1.610e-171
Identity = 302/332 (90.96%), Postives = 305/332 (91.87%), Query Frame = 1
Query:    1 QTGKAAVIVPVGATEQHGPNGLIGTDHMTAEAVARGVCEVTGAILAPTINYGMSHHHESFPGTVTLRPATFVAVVRDVAASLSGAGFTHVLFVNG----------------HGGNVGPAFKAFADFAAEQQQAREMXXXXXXXXXXXXXXXX-DSTARVKLISWYAGRESSTLAKELYGGEVGQHATPDEVAVTQHLFPESVKSGVELDPAAIQVAKDLGGMTKRIKDAETGLSVMDVQDFRRRFPDGRMFSNPALAIPEHGRRLLQAAVRDATDALGKFLSGQDVVEEAEAKAKRXXXXXXXXXXXXXXXXTEGKK-AGKTSFTPRARWGD 942
            QTGKAAVIVPVGATEQHGPNGLIGTDHMTAEAVARGVCE+TGAILAPTINYGMSHHHESFPGTVTLRPATFVAVVRDVAASLSGAGFTHVLFVNG                HGGNVGPAFKAFADFAAE+QQAREM XXXXXXXXXXXXXXX DSTARVKLISWYAGRESSTLAKELYGGEVGQHATPDEVAVTQHLFPESVKSGVELDPAAIQVAKDLGGMTKRIKDAETGLSVMDVQDFRRRFPDGRMFSNPALA PEHGRRLL+AAVRDATDALGKFLSGQDVVEE EAKAK XXXXXXXXXXXXXXXX      AGKTSFTPRARWGD
Sbjct:   19 QTGKAAVIVPVGATEQHGPNGLIGTDHMTAEAVARGVCEMTGAILAPTINYGMSHHHESFPGTVTLRPATFVAVVRDVAASLSGAGFTHVLFVNGTSRSQPYRVVFGRCPGHGGNVGPAFKAFADFAAEKQQAREMEXXXXXXXXXXXXXXXXDSTARVKLISWYAGRESSTLAKELYGGEVGQHATPDEVAVTQHLFPESVKSGVELDPAAIQVAKDLGGMTKRIKDAETGLSVMDVQDFRRRFPDGRMFSNPALATPEHGRRLLEAAVRDATDALGKFLSGQDVVEEDEAKAKXXXXXXXXXXXXXXXXXXXXXXXAGKTSFTPRARWGD 350          
BLAST of mRNA_Ecto-sp13_S_contig18647.5850.1 vs. uniprot
Match: A0A7T5JE98_9CYAN (Amidase n=2 Tax=Cyanobacteria TaxID=1117 RepID=A0A7T5JE98_9CYAN)

HSP 1 Score: 220 bits (560), Expect = 7.240e-64
Identity = 121/266 (45.49%), Postives = 161/266 (60.53%), Query Frame = 1
Query:    4 TGKAAVIVPVGATEQHGPNGLIGTDHMTAEAVARGVCEVTGAILAPTINYGMSHHHESFPGTVTLRPATFVAVVRDVAASLSGAGFTHVLFVNGHGGNVGPAFKAFADFAAEQQQAREMXXXXXXXXXXXXXXXXDSTARVKLISWYAGRESSTLAKELYGGEVGQHATPDEVAVTQHLFPESVKSGVELDPAAIQVAKDLGGMTKRIKDAETGLSVMDVQDFRRRFPDGRMFSNPALAIPEHGRRLLQAAVRDATDALGKFLSGQ 801
            T    +I+P+G+TEQHGPNGLIGTD + AEA+A+GV E T A++ PTIN GM+ HH +FPG+++LRP+T +A+V+D    L   GFT   F+NGHGGNV     AFA+  A   +A+                      R  + +WY  R   TLAKELYG + G HATP EVA+TQ+L+P+S+K  VELDP                  A  G  + +  DFR+ +PDGRM SNPALA PEHG++L +AAV+D T+    FLS +
Sbjct:   16 TRSQGLILPIGSTEQHGPNGLIGTDALCAEALAQGVGEATQALVGPTINVGMALHHTAFPGSMSLRPSTLIALVQDYLKPLVRYGFTRFFFINGHGGNVATLKAAFAETYATLAEAQ---------------LPQAGAVRCAVANWYMCRSVYTLAKELYGDQEGSHATPSEVALTQYLYPDSIKR-VELDPPV----------------APRGFPIYNAADFRQHYPDGRMGSNPALATPEHGQQLYEAAVKDLTNDYLSFLSAE 249          
BLAST of mRNA_Ecto-sp13_S_contig18647.5850.1 vs. uniprot
Match: A0A6H1TTU6_9CYAN (Creatininase family protein n=3 Tax=Cyanobacteria TaxID=1117 RepID=A0A6H1TTU6_9CYAN)

HSP 1 Score: 214 bits (545), Expect = 1.100e-61
Identity = 115/260 (44.23%), Postives = 156/260 (60.00%), Query Frame = 1
Query:   19 VIVPVGATEQHGPNGLIGTDHMTAEAVARGVCEVTGAILAPTINYGMSHHHESFPGTVTLRPATFVAVVRDVAASLSGAGFTHVLFVNGHGGNVGPAFKAFADFAAEQQQAREMXXXXXXXXXXXXXXXXDSTARVKLISWYAGRESSTLAKELYGGEVGQHATPDEVAVTQHLFPESVKSGVELDPAAIQVAKDLGGMTKRIKDAETGLSVMDVQDFRRRFPDGRMFSNPALAIPEHGRRLLQAAVRDATDALGKFLSG 798
            +++P+G+TEQHGP G+IGTD M AEA+ARGV + T A++APTIN GM+ HH SFPGT++LRP+T + VVRD   SL+ AGFTH  F+NGHGGN+      FA+  +   +                        R +L +W+       LAKELYG + G HATP E+A+TQ+L+ E++K    LDP   QVA              +G  +    DFRR +PDGRM SNPALA PEHG++  + AV++  +A  +FL G
Sbjct:   21 IVIPIGSTEQHGPTGVIGTDAMCAEAIARGVGDATEALVAPTINVGMALHHTSFPGTISLRPSTLMLVVRDYLTSLTKAGFTHFFFINGHGGNIATLKATFAETYSAIAELN---------------LPHGDRVRCRLSNWFTCHRVYQLAKELYGSQEGSHATPSEIALTQYLYAEAIKDA-PLDP---QVA--------------SGYPIYGPADFRRHYPDGRMGSNPALARPEHGQKFYELAVKELAEAYREFLQG 247          
BLAST of mRNA_Ecto-sp13_S_contig18647.5850.1 vs. uniprot
Match: UPI001FE6726F (creatininase family protein n=1 Tax=Azospirillum oleiclasticum TaxID=2735135 RepID=UPI001FE6726F)

HSP 1 Score: 213 bits (542), Expect = 1.940e-61
Identity = 118/259 (45.56%), Postives = 155/259 (59.85%), Query Frame = 1
Query:   19 VIVPVGATEQHGPNGLIGTDHMTAEAVARGVCEVTGAILAPTINYGMSHHHESFPGTVTLRPATFVAVVRDVAASLSGAGFTHVLFVNGHGGNVGPAFKAFADFAAEQQQAREMXXXXXXXXXXXXXXXXDSTARVKLISWYAGRESSTLAKELYGGEVGQHATPDEVAVTQHLFPESVKSGVELDPAAIQVAKDLGGMTKRIKDAETGLSVMDVQDFRRRFPDGRMFSNPALAIPEHGRRLLQAAVRDATDALGKFLS 795
            +I+P+G+TEQHGPNGLIGTD + AE +ARGV E TGA++APTI  GM+ HH +FPG++TL+P+T +AV+RD   SL+  GFT V FVNGHGGN+     AF +  AE +  +                      R  L+SW+     S L+KE++ G  G HATP EV+VTQ+ +P+S+K  V LDPA                 A +G    D +DFRRRFPDGR+ SNP LA PEHG+R   AAV        +FL+
Sbjct:    7 IIIPIGSTEQHGPNGLIGTDAICAEVIARGVGEATGALVAPTIGVGMAVHHMAFPGSMTLKPSTLIAVIRDNVLSLAEHGFTRVFFVNGHGGNIATIRAAFYEIYAELRNTKGAAAPDL---------------RCGLVSWWENDAVSRLSKEIFPGVEGSHATPSEVSVTQYAYPDSIKK-VPLDPAV----------------APSG-GFHDARDFRRRFPDGRIGSNPGLATPEHGKRFYDAAVTAIAGQYTRFLA 232          
BLAST of mRNA_Ecto-sp13_S_contig18647.5850.1 vs. uniprot
Match: UPI001A95B52F (creatininase family protein n=1 Tax=Arenibaculum pallidiluteum TaxID=2812559 RepID=UPI001A95B52F)

HSP 1 Score: 213 bits (541), Expect = 4.220e-61
Identity = 119/259 (45.95%), Postives = 159/259 (61.39%), Query Frame = 1
Query:   19 VIVPVGATEQHGPNGLIGTDHMTAEAVARGVCEVTGAILAPTINYGMSHHHESFPGTVTLRPATFVAVVRDVAASLSGAGFTHVLFVNGHGGNVGPAFKAFADFAAEQQQAREMXXXXXXXXXXXXXXXXDSTARVKLISWYAGRESSTLAKELYGGEVGQHATPDEVAVTQHLFPESVKSGVELDPAAIQVAKDLGGMTKRIKDAETGLSVMDVQDFRRRFPDGRMFSNPALAIPEHGRRLLQAAVRDATDALGKFLS 795
            +IVP+G+TEQHGP GLIGTD + AEA+ARG+ E TGA++AP I  GM+ HH +F G++TLRP+T VAV+RD   SL+  GFT +LFVNGHGGN+     AF +   E +  R                      R+K++SW+       L++EL+G   G HATP EVAVTQHLFP+++K      PAA+  A               G +  D +DFRRRFPDGR+ S+P+LA PEHG+RL+ AAV   ++   +FLS
Sbjct:   21 IIVPIGSTEQHGPTGLIGTDAICAEAIARGIGERTGAMVAPVIAVGMAAHHMAFAGSLTLRPSTLVAVIRDTVLSLAEHGFTRILFVNGHGGNIATVRAAFYEIHDELRTTRGAAAPDL---------------RLKVVSWWENEAVGRLSRELFGDREGSHATPSEVAVTQHLFPDAIKPV----PAALGTAP-------------RG-AFHDHRDFRRRFPDGRIGSDPSLARPEHGKRLMDAAVAAISEGWAEFLS 246          
BLAST of mRNA_Ecto-sp13_S_contig18647.5850.1 vs. uniprot
Match: UPI0019DD264F (Creatininase family protein n=1 Tax=Leptolyngbyaceae cyanobacterium M65_K2018_010 TaxID=2747810 RepID=UPI0019DD264F)

HSP 1 Score: 210 bits (534), Expect = 4.580e-60
Identity = 118/264 (44.70%), Postives = 154/264 (58.33%), Query Frame = 1
Query:    4 TGKAAVIVPVGATEQHGPNGLIGTDHMTAEAVARGVCEVTGAILAPTINYGMSHHHESFPGTVTLRPATFVAVVRDVAASLSGAGFTHVLFVNGHGGNVGPAFKAFADFAAEQQQAREMXXXXXXXXXXXXXXXXDSTARVKLISWYAGRESSTLAKELYGGEVGQHATPDEVAVTQHLFPESVKSGVELDPAAIQVAKDLGGMTKRIKDAETGLSVMDVQDFRRRFPDGRMFSNPALAIPEHGRRLLQAAVRDATDALGKFLS 795
            T    +I+P+G+TEQHGP GLIGTD M AEAVARGV E   A++APTIN GM+ HH +FPG+++L+P+T +A+V+D    L+  GFT   F+NGHGGN+     AFA   A   QA+                      R  + +WY  R   TLAKE YG + G HATP EVAVTQ+L+P+ +K    L P                  A  G  +    DFR+ +PDGRM SNPALA P+HGR+L +AAV+D T+   +FLS
Sbjct:   16 THSQGLILPIGSTEQHGPTGLIGTDAMCAEAVARGVGEAVEALVAPTINVGMALHHTAFPGSMSLQPSTLIALVQDYVLPLARHGFTRFFFINGHGGNIATLKAAFAATYAAVAQAQ---------------LPQADQVRCTVANWYLCRSVYTLAKEFYGEQEGSHATPSEVAVTQYLYPDHIKRA-PLSPTV----------------APAGYPIYGPADFRQHYPDGRMGSNPALATPDHGRQLYEAAVKDLTNDYLQFLS 247          
BLAST of mRNA_Ecto-sp13_S_contig18647.5850.1 vs. uniprot
Match: A0A2S6TIM3_9PROT (Creatinine amidohydrolase n=1 Tax=Alphaproteobacteria bacterium MarineAlpha4_Bin2 TaxID=2013075 RepID=A0A2S6TIM3_9PROT)

HSP 1 Score: 210 bits (534), Expect = 5.520e-60
Identity = 116/259 (44.79%), Postives = 160/259 (61.78%), Query Frame = 1
Query:   19 VIVPVGATEQHGPNGLIGTDHMTAEAVARGVCEVTGAILAPTINYGMSHHHESFPGTVTLRPATFVAVVRDVAASLSGAGFTHVLFVNGHGGNVGPAFKAFADFAAEQQQAREMXXXXXXXXXXXXXXXXDSTARVKLISWYAGRESSTLAKELYGGEVGQHATPDEVAVTQHLFPESVKSGVELDPAAIQVAKDLGGMTKRIKDAETGLSVMDVQDFRRRFPDGRMFSNPALAIPEHGRRLLQAAVRDATDALGKFLS 795
            +IVP+G+TEQHGP+GLIGTD +TAE + R V EVT + +APT+NYGM+ HH +F GT+TL+P+T +AVVRD+  SL   GF+H+ FVNGHGGNV     AF++  +E  + R M                     ++L +W+AG  +++L K LYG   G HATP EVAVT + FP+  ++ VEL P        L  +T+  +  E         DFR+ FPDGRM S+P+LA PE G+RL+  AV + +D   KFL+
Sbjct:   21 IIVPIGSTEQHGPSGLIGTDALTAELIGRRVGEVTASFVAPTLNYGMAQHHMAFTGTMTLQPSTMIAVVRDLTKSLIRHGFSHIFFVNGHGGNVNSVKVAFSEVQSELAEMRSMRDGDTNHPPEG--------VHLELHNWWAGERTTSLRKSLYGDREGYHATPSEVAVTWYSFPDQQRN-VELGP--------LEKVTRAYQGPE---------DFRKLFPDGRMGSDPSLATPEDGKRLVSLAVDELSDLYRKFLA 253          
BLAST of mRNA_Ecto-sp13_S_contig18647.5850.1 vs. uniprot
Match: K9YX96_DACSA (Uncharacterized protein, putative amidase n=2 Tax=Cyanobacteria TaxID=1117 RepID=K9YX96_DACSA)

HSP 1 Score: 209 bits (533), Expect = 6.020e-60
Identity = 111/258 (43.02%), Postives = 152/258 (58.91%), Query Frame = 1
Query:   19 VIVPVGATEQHGPNGLIGTDHMTAEAVARGVCEVTGAILAPTINYGMSHHHESFPGTVTLRPATFVAVVRDVAASLSGAGFTHVLFVNGHGGNVGPAFKAFADFAAEQQQAREMXXXXXXXXXXXXXXXXDSTARVKLISWYAGRESSTLAKELYGGEVGQHATPDEVAVTQHLFPESVKSGVELDPAAIQVAKDLGGMTKRIKDAETGLSVMDVQDFRRRFPDGRMFSNPALAIPEHGRRLLQAAVRDATDALGKFL 792
            +I+P+G+TEQHGP GLIGTD + AE +A+GV E TGA++APT+N GM+ HH +FPG+++L+P T + V +D  +SL+ AGF    F+NGHGGN+     AF+   A     +                      R  + +W+  RE   LAKELYG E G HATP EVAVTQ ++PE++KS   LD                 K+  +G  +   +DFRR +PDGRM SNP LA PEHG++L Q AV+  ++   KFL
Sbjct:   21 IIIPIGSTEQHGPTGLIGTDAICAEVIAKGVGEATGALVAPTVNIGMALHHLAFPGSISLQPTTLIQVTQDTVSSLAAAGFQRFFFINGHGGNIATLKAAFSQTYAHLANLK---------------LPHADQVRCNVANWFMCREVYQLAKELYGEEEGSHATPSEVAVTQFVYPEAIKSAF-LD-----------------KEVASGHPIYSAEDFRRHYPDGRMGSNPGLATPEHGKQLYQVAVKALSEQYLKFL 245          
BLAST of mRNA_Ecto-sp13_S_contig18647.5850.1 vs. uniprot
Match: A0A2W7AKY7_9CYAN (Amidase n=2 Tax=Bacteria TaxID=2 RepID=A0A2W7AKY7_9CYAN)

HSP 1 Score: 209 bits (532), Expect = 8.690e-60
Identity = 119/258 (46.12%), Postives = 157/258 (60.85%), Query Frame = 1
Query:   19 VIVPVGATEQHGPNGLIGTDHMTAEAVARGVCEVTGAILAPTINYGMSHHHESFPGTVTLRPATFVAVVRDVAASLSGAGFTHVLFVNGHGGNVGPAFKAFADFAAEQQQAREMXXXXXXXXXXXXXXXXDSTARVKLISWYAGRESSTLAKELYGGEVGQHATPDEVAVTQHLFPESVKSGVELDPAAIQVAKDLGGMTKRIKDAETGLSVMDVQDFRRRFPDGRMFSNPALAIPEHGRRLLQAAVRDATDALGKFL 792
            +I+P+G+TEQHGP GLIGTD + AEA+ARGV EVT AI+APTIN GM+ HH +FPG+++LRP+T + V+RD   SL+  GFT  LF+NGHGGNV     AFA+  A                            R ++ +WY       LAK LYG + G HATP EVA+TQ+L+PE++K  V L+P    V+KD      RI  A          DFRRR+PDGRM SNPALA P+HG++    AV++ + +  +FL
Sbjct:   21 IIIPIGSTEQHGPTGLIGTDAICAEAIARGVGEVTQAIVAPTINVGMALHHTAFPGSISLRPSTLMLVIRDTITSLAKVGFTRFLFINGHGGNVATLKAAFAEVYATLADLNVATV---------------DQVRCQVSNWYMCGSVYGLAKRLYGDQEGSHATPSEVALTQYLYPEAIKQAV-LNP---DVSKD-----HRIYGAA---------DFRRRYPDGRMGSNPALATPDHGKQFYDLAVKELSSSYLEFL 245          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18647.5850.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCT2_9PHAE3.580e-17798.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCG6_ECTSI1.610e-17190.96Creatininase subfamily n=1 Tax=Ectocarpus siliculo... [more]
A0A7T5JE98_9CYAN7.240e-6445.49Amidase n=2 Tax=Cyanobacteria TaxID=1117 RepID=A0A... [more]
A0A6H1TTU6_9CYAN1.100e-6144.23Creatininase family protein n=3 Tax=Cyanobacteria ... [more]
UPI001FE6726F1.940e-6145.56creatininase family protein n=1 Tax=Azospirillum o... [more]
UPI001A95B52F4.220e-6145.95creatininase family protein n=1 Tax=Arenibaculum p... [more]
UPI0019DD264F4.580e-6044.70Creatininase family protein n=1 Tax=Leptolyngbyace... [more]
A0A2S6TIM3_9PROT5.520e-6044.79Creatinine amidohydrolase n=1 Tax=Alphaproteobacte... [more]
K9YX96_DACSA6.020e-6043.02Uncharacterized protein, putative amidase n=2 Tax=... [more]
A0A2W7AKY7_9CYAN8.690e-6046.12Amidase n=2 Tax=Bacteria TaxID=2 RepID=A0A2W7AKY7_... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18647contigEcto-sp13_S_contig18647:2..3405 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score450.3
Seed ortholog evalue8.4e-124
Seed eggNOG ortholog2880.D8LCG6
Model size1868
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.Creatinine amidohydrolase
EggNOG OGs2SG4P@2759,COG1402@1
Cds size1056
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18647.5850.1prot_Ecto-sp13_S_contig18647.5850.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18647 733..3324 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462956.18204-UTR-Ecto-sp13_S_contig18647:1..7321681462956.18204-UTR-Ecto-sp13_S_contig18647:1..732Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18647 2..732 -
1681462956.2675135-UTR-Ecto-sp13_S_contig18647:3324..34051681462956.2675135-UTR-Ecto-sp13_S_contig18647:3324..3405Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18647 3325..3405 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462956.196104-CDS-Ecto-sp13_S_contig18647:732..12781681462956.196104-CDS-Ecto-sp13_S_contig18647:732..1278Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18647 733..1278 -
1681462956.2116468-CDS-Ecto-sp13_S_contig18647:1703..17751681462956.2116468-CDS-Ecto-sp13_S_contig18647:1703..1775Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18647 1704..1775 -
1681462956.2227995-CDS-Ecto-sp13_S_contig18647:2189..24251681462956.2227995-CDS-Ecto-sp13_S_contig18647:2189..2425Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18647 2190..2425 -
1681462956.2331-CDS-Ecto-sp13_S_contig18647:2749..29391681462956.2331-CDS-Ecto-sp13_S_contig18647:2749..2939Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18647 2750..2939 -
1681462956.2520502-CDS-Ecto-sp13_S_contig18647:3312..33241681462956.2520502-CDS-Ecto-sp13_S_contig18647:3312..3324Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18647 3313..3324 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18647.5850.1

>prot_Ecto-sp13_S_contig18647.5850.1 ID=prot_Ecto-sp13_S_contig18647.5850.1|Name=mRNA_Ecto-sp13_S_contig18647.5850.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=352bp
MTAEAVARGVCEVTGAILAPTINYGMSHHHESFPGTVTLRPATFVAVVRD
VAASLSGAGFTHVLFVNGHGGNVGPAFKAFADFAAEQQQAREMEEEEAES
SGGGGGGDGDSTARVKLISWYAGRESSTLAKELYGGEVGQHATPDEVAVT
QHLFPESVKSGVELDPAAIQVAKDLGGMTKRIKDAETGLSVMDVQDFRRR
FPDGRMFSNPALAIPEHGRRLLQAAVRDATDALGKFLSGQDVVEEAEAKA
KRAAAMAAAAAAAEAAAATEGKKAGKTSFTPRARWGDDDYTSSGSGGGGG
GRSGRGRGRRRGGEGSSGGGGGGGVQQAAARRAGGETTGAAAAVVTGPPV
R*
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mRNA from alignment at Ecto-sp13_S_contig18647:2..3405-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18647.5850.1 ID=mRNA_Ecto-sp13_S_contig18647.5850.1|Name=mRNA_Ecto-sp13_S_contig18647.5850.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3404bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18647:2..3405- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGACTGGCAAGGCCGCCGTGATCGTTCCCGTCGGCGCCACGGAGCAGCA CGGGCCGAACGGGCTCATCGGGACCGATCACATGACCGCCGAGGTGATGC GCGAAGACTTCGGGGGCATCGTACGTTACTGCAAGTGTCGAACCGACCTT CTAGTTTCGCCGAACTCTGTGCCATGGTGTTTCGCATCGTTTTGTTTTGA CGAGGCTCCGATCGTCTGGACGGGGAAGGGTTTTCTCCTGCGCGACAACT GCCGTTGCTTTATCGACGAGACGAGTTCTCAACACCACATGCTTAAGACT CTTCCCCCGTAGTGTATCCACCAGCAAAAATTGATTCGTGTCCCGCCCGG CACCAACTTGTGTTCCCCCCTCTCACCCCCCTCCCCCCTACATGCACGCC CTCGTCTCAAACCAATTTTCACACCATCTTTATCGCCGCCGGTGTTGGAA AAAAAATGCTAAATAGGCCGTCGCCCGCGGTGTCTGCGAGGTGACCGGGG CGATCCTCGCCCCCACCATCAACTACGGCATGTCTCACCACCACGAGTCC TTCCCGGGGACTGTGACCCTGAGGCCGGCGACGTTCGTGGCGGTGGTGCG GGACGTGGCTGCTTCCCTCTCGGGGGCCGGCTTCACGCACGTGTTGTTCG TCAACGGTAGGTCGAGGGGTCAGCCGTACCGCGTTACCTTTGGGCAGTGT CTGGGTGAAATGTAACTCCTCTTCGCACGGCCAAGCCAGTGTTTCACGAT TCGTGTGTGTTGTATGCGTGGCGTTGAGCAGGCTTGGTACATAGCGCCGG TCTCGGGCGTTGGGGCGGTCGGTTGGTCTAGGCACATATGAAGTGTCACG CAGTGGTGCATCGAATTCTAAACACTCTTGTTCCCTTCCCAGCTCCGGCC TCCTCTTCGCCCGATCCGACCAACAACACCATCAAAGAGTAAGCACCTTC TCCTTCTCCTAACGAATCCGAAAACAACAGGCCACGGCGGCAACGTCGGC CCCGCCTTCAAAGCGTTCGCCGACTTCGCAGCAGAACAACAGCAAGCCCG AGAAATGGAGGAAGAAGAAGCAGAAAGTAGTGGCGGCGGTGGAGGCGGCG ACGGTGACAGCACAGCCCGGGTAAAGCTGATTAGCTGGTACGCGGGGCGT GAGTCCTCGACCCTCGCCAAGGAGCTGTACGGGGGCGAGGTCGGGCAGCA CGCCACGCCGGACGAGGTGTGAACAAAGGAAAATTTCAAGGAAATATCAG GTGTTACACTGGGCACACGGCACGCGTAGATTCCGACTCCTGAGGTCGCC TGGCGTTGTACAACGCCCCCCCCGTACGGTGAATCAATTCGTTGTGATTG GGCTACCACTGCCGTCTTCTGTGCTCCCGCTCTCTTGCTTCTCGACAGGT CCTCAGGTCCTCATCTTTCTTTCTCTCCTCTCACTCGCGCTTCTCTCTTC TCCTCTTCTCTGCCGTTTCCTTGGCTGTCTTTCAATCTCTCCAACTTCAC GGTACTGAGAGGAGACCGGGACGTTTATTCAATGTGAAGGCTACACCGAT ATCTTCCTCCTATTGTGTGCACCTGTTCCCCGATGCTACCTGCCTGCCTG TTCCTGTTTCTTCGCATTCGCTCGTCGTAGGTTGCGGTGACCCAGCACCT ATTCCCGGAGTCTGTGAAATCTGGGGTCGAGCTAGACCCAGCCGCAATCC AGGTGAGCAACAGAATCGTCAGAAGAGTGCCTGCTCTCACCCAGATTCTG TAAGTTTGTTGGTTTCTGCTTCACGCAAGAGCGGTCGTATGTTGACGACT GTTTAACAGAACAGCAGCAGCAGCAATGACAGGGCTTGGTACCAGGGACA AACGCTGGCACCGGCATCGTTATCTTCTGTTTGCAAAGATGTCATCAGGA ACATCTTCTGTCGCATGGAGGAGAAAATAGCCCGTGGGAGACGTGAAGAA TCCATGGGTCGAAGGACGGGGGCGAGGCCGCTTGAAGACTGCTCTCCGTA CAGAGTGAAAACCGCCACACGATGAAAATGAACCAGATTTCCTCAAAAGC TTCGAAACAAACGGACAACAAGTGCACCAAATACACCGGTCGTCAACAAA AATCCTGTATCATCACCACCACCCCAGGTGGCGAAAGACCTCGGGGGCAT GACGAAGCGGATCAAGGACGCGGAGACGGGGCTCTCCGTCATGGACGTCC AGGACTTCCGCCGCCGCTTCCCCGACGGCCGCATGTTCAGCAACCCGGCC CTGGCCATCCCGGAGCACGGCCGGCGCCTCCTCCAGGCCGCGGTCAGAGA CGCCACGGACGCGCTGGGCAAGTTCTTGTCCGGGCAGGACGTTGTGGAGG AGGCGGAGGCGAAGGCCAAGCGGGCGGCCGCTATGGCAGCAGCAGCAGCG GCGGCGGAGGCGGCGGCGGCGACGGAGGGGAAGAAGGCGGGCAAGACATC GTTCACGCCGCGTGCGCGATGGGGCGACGACGATTACACCAGCAGCGGTA GTGGTGGTGGTGGTGGTGGACGCAGCGGTCGAGGCCGGGGACGAAGACGT GGCGGCGAGGGTAGCAGCGGCGGCGGCGGCGGCGGCGGTGTTCAGCAAGC GGCAGCACGACGAGCGGGGGGGGAGACAACAGGGGCCGCCGCCGCCGTTG TGACAGGACCTCCCGTGCGATAGCGGGGCCGCACAACCGCGGCTACTGCG GTGGATTGATCGTGCGAGGGGGGCTTGAAGGCTAAGGAACAGTCGGAGGT GGTCAGCCGTCGCATTTCAGCGGCGAGATGGAAGCCTGCCGGCGAGGGCG GGTTGCGTCCGCGGTATATAGTTATCTCCCCGTTACACAAAAGAAAGACC CAGCTCCCTCCAACAAGACGCAGAATCTCCTTGACATTGTGCGCGGACAA ATGGCGGTAGCCTTGAACTCGGGAACGGGGCGACAAGTTGCACCGATGCT GTTGCGCGCGAAATTTACGTGTCCAACTAGCGGCAGTACCCTGGATGCCG AGGCTCTGATTGGAGTGAGGGAGTGGGCGACAAGAATGTTGGGTCCACCC ATCGCAGAACAGTTCTTGACGTCGCCTCGTGGACATGAACGAACGCTTTG ACGGTCCGTGGTCGGCCTGGAGTTTTGAGTAGGGTGCAGAGAGCGCAGTG CTAAAACAAGGAGAGCGCTTGGCAATGCAATGTGTTCAGCGCAGTGTTAA GGGGAGCGCTTGGGAATGAGACGTGTTTTCTGGCTACTATTTTTTGTGTA GGGAATACAGAGACACCGCGGGACCTGAGGGGGCAGTAACCCTTGACACG TGTTTTCTGTTTTTTCTCGGGGTCCCGGTGTAGTACTACTGCTGCCTGCA GCCAAAAACAAGTGTTGGAGGCGGCTACTTCGCGTCCAAGACGCCACCCG AGCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18647:2..3405-

>mRNA_Ecto-sp13_S_contig18647.5850.1 ID=mRNA_Ecto-sp13_S_contig18647.5850.1|Name=mRNA_Ecto-sp13_S_contig18647.5850.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1056bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18647:2..3405- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCGCCGAGGCCGTCGCCCGCGGTGTCTGCGAGGTGACCGGGGCGAT
CCTCGCCCCCACCATCAACTACGGCATGTCTCACCACCACGAGTCCTTCC
CGGGGACTGTGACCCTGAGGCCGGCGACGTTCGTGGCGGTGGTGCGGGAC
GTGGCTGCTTCCCTCTCGGGGGCCGGCTTCACGCACGTGTTGTTCGTCAA
CGGCCACGGCGGCAACGTCGGCCCCGCCTTCAAAGCGTTCGCCGACTTCG
CAGCAGAACAACAGCAAGCCCGAGAAATGGAGGAAGAAGAAGCAGAAAGT
AGTGGCGGCGGTGGAGGCGGCGACGGTGACAGCACAGCCCGGGTAAAGCT
GATTAGCTGGTACGCGGGGCGTGAGTCCTCGACCCTCGCCAAGGAGCTGT
ACGGGGGCGAGGTCGGGCAGCACGCCACGCCGGACGAGGTTGCGGTGACC
CAGCACCTATTCCCGGAGTCTGTGAAATCTGGGGTCGAGCTAGACCCAGC
CGCAATCCAGGTGGCGAAAGACCTCGGGGGCATGACGAAGCGGATCAAGG
ACGCGGAGACGGGGCTCTCCGTCATGGACGTCCAGGACTTCCGCCGCCGC
TTCCCCGACGGCCGCATGTTCAGCAACCCGGCCCTGGCCATCCCGGAGCA
CGGCCGGCGCCTCCTCCAGGCCGCGGTCAGAGACGCCACGGACGCGCTGG
GCAAGTTCTTGTCCGGGCAGGACGTTGTGGAGGAGGCGGAGGCGAAGGCC
AAGCGGGCGGCCGCTATGGCAGCAGCAGCAGCGGCGGCGGAGGCGGCGGC
GGCGACGGAGGGGAAGAAGGCGGGCAAGACATCGTTCACGCCGCGTGCGC
GATGGGGCGACGACGATTACACCAGCAGCGGTAGTGGTGGTGGTGGTGGT
GGACGCAGCGGTCGAGGCCGGGGACGAAGACGTGGCGGCGAGGGTAGCAG
CGGCGGCGGCGGCGGCGGCGGTGTTCAGCAAGCGGCAGCACGACGAGCGG
GGGGGGAGACAACAGGGGCCGCCGCCGCCGTTGTGACAGGACCTCCCGTG
CGATAG
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