mRNA_Ecto-sp13_S_contig18632.5844.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig18632.5844.1 vs. uniprot
Match: D7FTS9_ECTSI (Endonuclease III homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTS9_ECTSI) HSP 1 Score: 232 bits (592), Expect = 3.660e-74 Identity = 129/139 (92.81%), Postives = 133/139 (95.68%), Query Frame = 1
Query: 55 QNRPR-SIMAAHK--PASPPIRKTTRTPIPTEPPQEKWREQMEGIRSTRRSRDAAVDFAGAGALRDSSAGSEDDVRFQVLMSAMLSSQTKDPVTAAGVNRMRQACAPSPLGAAALLATGMDEDALTELLHPVSFKKTKA 462
+NRP SIMAA+K PASPPIRKTTR PIPTEPPQEKWREQMEGIRS RRSRDAAVDFAGAGALRDSSAGSEDDVRFQVLMSAMLSSQTKDPVTAAG+NRMRQACAP+PLGAAALLATGMDEDALTELLHPVSFKKTKA
Sbjct: 6 RNRPGLSIMAANKNAPASPPIRKTTRIPIPTEPPQEKWREQMEGIRSVRRSRDAAVDFAGAGALRDSSAGSEDDVRFQVLMSAMLSSQTKDPVTAAGLNRMRQACAPAPLGAAALLATGMDEDALTELLHPVSFKKTKA 144
BLAST of mRNA_Ecto-sp13_S_contig18632.5844.1 vs. uniprot
Match: A0A6H5L2I5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2I5_9PHAE) HSP 1 Score: 219 bits (558), Expect = 2.560e-70 Identity = 122/133 (91.73%), Postives = 125/133 (93.98%), Query Frame = 1
Query: 76 MAAHKPASP-PIRKTTRTPIPTEPPQEKWREQMEGIRSTRRSRDAAVDFAGAGALRDSSAGSEDDVRFQVLMSAMLSSQTKDPVTAAGVNRMRQACAPSPLGAAALLATGMDEDALTELLHPVSFKKTKASAA 471
MAA+K A RKTTRTPIPTEPPQ KWREQMEGIRSTRRSRDAAVDFAGAGALRDSSAGSEDDVRFQVLMSAMLSSQTKDPVTAAG+NRMRQACAP+PLGAAALLATGMDEDALTELLHPVSFKKTKAS A
Sbjct: 1 MAANKNAPALATRKTTRTPIPTEPPQGKWREQMEGIRSTRRSRDAAVDFAGAGALRDSSAGSEDDVRFQVLMSAMLSSQTKDPVTAAGLNRMRQACAPAPLGAAALLATGMDEDALTELLHPVSFKKTKASQA 133
BLAST of mRNA_Ecto-sp13_S_contig18632.5844.1 vs. uniprot
Match: A0A8C4CEN8_9TELE (Endonuclease III-like protein 1 n=1 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C4CEN8_9TELE) HSP 1 Score: 73.9 bits (180), Expect = 9.140e-13 Identity = 49/101 (48.51%), Postives = 64/101 (63.37%), Query Frame = 1
Query: 157 WREQMEGIRSTRRSRDAAVDFAGAGALRDSSAGSEDDVRFQVLMSAMLSSQTKDPVTAAGVNRMRQACAPSPLGAAALLATGMDEDALTELLHPVSFKKTK 459
WR Q+E IR R++RDA VD GA DS A E ++R+QVL+S MLSSQTKD VT+A + R++ L A +L T D+D L L++PV F KTK
Sbjct: 56 WRRQLENIREMRKARDAPVDHMGAVKCYDSQATPE-EMRYQVLVSLMLSSQTKDQVTSAAMQRLQA----HGLTVATILNT--DDDTLGRLIYPVGFWKTK 149
BLAST of mRNA_Ecto-sp13_S_contig18632.5844.1 vs. uniprot
Match: A0A8C4NKF7_EPTBU (Nth-like DNA glycosylase 1 n=1 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4NKF7_EPTBU) HSP 1 Score: 73.2 bits (178), Expect = 1.220e-12 Identity = 48/103 (46.60%), Postives = 68/103 (66.02%), Query Frame = 1
Query: 154 KWREQMEGIRSTRRSRDAAVDFAGAGALRDSSAGSEDDVRFQVLMSAMLSSQTKDPVTAAGVNRMRQACAPSPLGAAALLATGMDEDALTELLHPVSFKKTKA 462
+WREQ+E I++ R+++DA VD GA D A ++ R+QVL+S MLSSQTKD VTAA + R+R+ C L A+L T D+ L +L++PV F +TKA
Sbjct: 64 RWREQLENIQTMRQAKDAPVDKLGAEKCFDEKAPAQVK-RYQVLISLMLSSQTKDEVTAAAMRRLRENC----LTVEAILGT--DDITLEKLIYPVGFWRTKA 159
BLAST of mRNA_Ecto-sp13_S_contig18632.5844.1 vs. uniprot
Match: A0A8C4G773_9TELE (Endonuclease III-like protein 1 n=3 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C4G773_9TELE) HSP 1 Score: 73.9 bits (180), Expect = 1.670e-12 Identity = 49/101 (48.51%), Postives = 64/101 (63.37%), Query Frame = 1
Query: 157 WREQMEGIRSTRRSRDAAVDFAGAGALRDSSAGSEDDVRFQVLMSAMLSSQTKDPVTAAGVNRMRQACAPSPLGAAALLATGMDEDALTELLHPVSFKKTK 459
WR Q+E IR R++RDA VD GA DS A E ++R+QVL+S MLSSQTKD VT+A + R++ L A +L T D+D L L++PV F KTK
Sbjct: 82 WRRQLENIREMRKARDAPVDHMGAVKCYDSQATPE-EMRYQVLVSLMLSSQTKDQVTSAAMQRLQA----HGLTVATILNT--DDDTLGRLIYPVGFWKTK 175
BLAST of mRNA_Ecto-sp13_S_contig18632.5844.1 vs. uniprot
Match: W5KSY1_ASTMX (Endonuclease III-like protein 1 n=1 Tax=Astyanax mexicanus TaxID=7994 RepID=W5KSY1_ASTMX) HSP 1 Score: 72.0 bits (175), Expect = 3.470e-12 Identity = 51/107 (47.66%), Postives = 65/107 (60.75%), Query Frame = 1
Query: 139 EPPQEKWREQMEGIRSTRRSRDAAVDFAGAGALRDSSAGSEDDVRFQVLMSAMLSSQTKDPVTAAGVNRMRQACAPSPLGAAALLATGMDEDALTELLHPVSFKKTK 459
EPP WR Q+ IR R RDA VD+ GA D A E VR+QVL+S MLSSQTKD VT+A + R+R+ L ++L T D+D L +L++PV F KTK
Sbjct: 40 EPPD--WRRQLSFIREMRSGRDAPVDYMGADKCYDPQASPE-VVRYQVLVSLMLSSQTKDQVTSAAMTRLRK----HGLSIESILRT--DDDRLGKLIYPVGFWKTK 137
BLAST of mRNA_Ecto-sp13_S_contig18632.5844.1 vs. uniprot
Match: A0A516AG77_LINPO (Endonuclease III-like protein 1 (Fragment) n=1 Tax=Lingulodinium polyedra TaxID=160621 RepID=A0A516AG77_LINPO) HSP 1 Score: 71.6 bits (174), Expect = 8.580e-12 Identity = 50/110 (45.45%), Postives = 63/110 (57.27%), Query Frame = 1
Query: 145 PQEKWREQMEGIRSTRRSRDAAVDFAGAGALRDSSAGS----EDDVRFQVLMSAMLSSQTKDPVTAAGVNRMRQACAPSPLGAAALLATGMDEDALTELLHPVSFKKTKA 462
PQ W+EQ+ GI + RR+RDA VD++G ++ S S E +RF+ LM AMLSSQT+DPVT A V R+ A A A L + E L LL PVSF KA
Sbjct: 69 PQPDWQEQLAGIIAMRRARDAPVDWSGTESIAARSGPSGGLQEQRMRFRALMGAMLSSQTRDPVTYAAVERLEVATARHGGLAPTSLLEALTEPDLAALLKPVSFAARKA 178
BLAST of mRNA_Ecto-sp13_S_contig18632.5844.1 vs. uniprot
Match: UPI000BBDA922 (endonuclease III-like protein 1 n=1 Tax=Astyanax mexicanus TaxID=7994 RepID=UPI000BBDA922) HSP 1 Score: 72.0 bits (175), Expect = 8.650e-12 Identity = 51/107 (47.66%), Postives = 65/107 (60.75%), Query Frame = 1
Query: 139 EPPQEKWREQMEGIRSTRRSRDAAVDFAGAGALRDSSAGSEDDVRFQVLMSAMLSSQTKDPVTAAGVNRMRQACAPSPLGAAALLATGMDEDALTELLHPVSFKKTK 459
EPP WR Q+ IR R RDA VD+ GA D A E VR+QVL+S MLSSQTKD VT+A + R+R+ L ++L T D+D L +L++PV F KTK
Sbjct: 143 EPPD--WRRQLSFIREMRSGRDAPVDYMGADKCYDPQASPE-VVRYQVLVSLMLSSQTKDQVTSAAMTRLRK----HGLSIESILRT--DDDRLGKLIYPVGFWKTK 240
BLAST of mRNA_Ecto-sp13_S_contig18632.5844.1 vs. uniprot
Match: UPI001FEE33DC (endonuclease III-like protein 1 n=1 Tax=Tachysurus fulvidraco TaxID=1234273 RepID=UPI001FEE33DC) HSP 1 Score: 72.0 bits (175), Expect = 8.930e-12 Identity = 53/107 (49.53%), Postives = 64/107 (59.81%), Query Frame = 1
Query: 139 EPPQEKWREQMEGIRSTRRSRDAAVDFAGAGALRDSSAGSEDDVRFQVLMSAMLSSQTKDPVTAAGVNRMRQACAPSPLGAAALLATGMDEDALTELLHPVSFKKTK 459
EPP WR Q+ IR R RDA VD GA D A E +RFQVL+S MLSSQTKD VTAA + R+R L +++L MDED L +L++PV F KTK
Sbjct: 112 EPPD--WRRQLSFIREMRSRRDAPVDLMGAEKCYDPQATPE-VMRFQVLVSLMLSSQTKDQVTAAAMERLRA----HNLSVSSILK--MDEDKLGKLIYPVGFWKTK 209
BLAST of mRNA_Ecto-sp13_S_contig18632.5844.1 vs. uniprot
Match: A0A7K6QEB5_9PASS (DNA-(apurinic or apyrimidinic site) lyase (Fragment) n=1 Tax=Climacteris rufus TaxID=47695 RepID=A0A7K6QEB5_9PASS) HSP 1 Score: 70.9 bits (172), Expect = 9.370e-12 Identity = 47/101 (46.53%), Postives = 62/101 (61.39%), Query Frame = 1
Query: 157 WREQMEGIRSTRRSRDAAVDFAGAGALRDSSAGSEDDVRFQVLMSAMLSSQTKDPVTAAGVNRMRQACAPSPLGAAALLATGMDEDALTELLHPVSFKKTK 459
WREQ+E IR RRSRDA VD G DS+A + +R+QVL+S MLSSQTKD VT+A + R+R+ G + MDE+ L L++PV F + K
Sbjct: 45 WREQLERIREMRRSRDAPVDEMGVQKCYDSNAPPQ-VMRYQVLLSLMLSSQTKDQVTSAAMLRLRRR------GLSVDTVLHMDEETLGHLIYPVGFWRNK 138 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18632.5844.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig18632.5844.1 >prot_Ecto-sp13_S_contig18632.5844.1 ID=prot_Ecto-sp13_S_contig18632.5844.1|Name=mRNA_Ecto-sp13_S_contig18632.5844.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=158bp MPPSGLAFSRFPLRRRDCQNRPRSIMAAHKPASPPIRKTTRTPIPTEPPQback to top mRNA from alignment at Ecto-sp13_S_contig18632:758..2424- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig18632.5844.1 ID=mRNA_Ecto-sp13_S_contig18632.5844.1|Name=mRNA_Ecto-sp13_S_contig18632.5844.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1667bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18632:758..2424- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18632:758..2424- >mRNA_Ecto-sp13_S_contig18632.5844.1 ID=mRNA_Ecto-sp13_S_contig18632.5844.1|Name=mRNA_Ecto-sp13_S_contig18632.5844.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=474bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18632:758..2424- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |