mRNA_Ecto-sp13_S_contig18632.5843.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18632.5843.1
Unique NamemRNA_Ecto-sp13_S_contig18632.5843.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18632.5843.1 vs. uniprot
Match: D7FTS9_ECTSI (Endonuclease III homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTS9_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 4.150e-32
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1 
Query:    1 HILMVCKRLAEAEDGRQAGAIPDTVEGLLELPGVGPKMTYLVMDVAWGRNEGICVD 168
            HILMVCKRLAEAEDGRQAGAIPDTVEGLLELPGVGPKMTYLVMDVAWGRNEGICVD
Sbjct:  146 HILMVCKRLAEAEDGRQAGAIPDTVEGLLELPGVGPKMTYLVMDVAWGRNEGICVD 201
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BLAST of mRNA_Ecto-sp13_S_contig18632.5843.1 vs. uniprot
Match: A0A6H5L2I5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2I5_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 2.500e-26
Identity = 52/55 (94.55%), Postives = 52/55 (94.55%), Query Frame = 3 
Query:    3 YLDGVQTVSRGRGRSAGWSHPRYRRRSARTPGGWAEDDVSRHGRGLGTERRDLRR 167
            YLDGVQTVSRGRG SAGWSHPRYRRRSA TPGG AEDDVSRHGRGLGTERRDLRR
Sbjct:  134 YLDGVQTVSRGRGWSAGWSHPRYRRRSAGTPGGRAEDDVSRHGRGLGTERRDLRR 188
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BLAST of mRNA_Ecto-sp13_S_contig18632.5843.1 vs. uniprot
Match: A0A218YZP4_9HELO (Endonuclease III homolog n=1 Tax=Marssonina coronariae TaxID=503106 RepID=A0A218YZP4_9HELO)

HSP 1 Score: 68.9 bits (167), Expect = 2.850e-12
Identity = 32/50 (64.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:   19 KRLAEAEDGRQAGAIPDTVEGLLELPGVGPKMTYLVMDVAWGRNEGICVD 168
            K  AE    +  G IPDT+EGL+ LPGVGPKM YL + VAWGRNEGI VD
Sbjct:  235 KATAEILRDQYNGDIPDTIEGLMSLPGVGPKMAYLCLSVAWGRNEGIGVD 284
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BLAST of mRNA_Ecto-sp13_S_contig18632.5843.1 vs. uniprot
Match: K2RCR8_MACPH (Endonuclease III homolog n=1 Tax=Macrophomina phaseolina (strain MS6) TaxID=1126212 RepID=K2RCR8_MACPH)

HSP 1 Score: 67.8 bits (164), Expect = 4.250e-12
Identity = 32/50 (64.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:   19 KRLAEAEDGRQAGAIPDTVEGLLELPGVGPKMTYLVMDVAWGRNEGICVD 168
            K+ AE    R  G IPDT+EGL+ LPGVGPKM YL M  AWGR+EGI VD
Sbjct:   92 KQTAELLRDRFDGDIPDTIEGLVSLPGVGPKMAYLCMSAAWGRDEGIGVD 141
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BLAST of mRNA_Ecto-sp13_S_contig18632.5843.1 vs. uniprot
Match: A0A6J3M2Q0_9PEZI (Endonuclease III homolog n=1 Tax=Dissoconium aciculare CBS 342.82 TaxID=1314786 RepID=A0A6J3M2Q0_9PEZI)

HSP 1 Score: 67.8 bits (164), Expect = 7.300e-12
Identity = 32/50 (64.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:   19 KRLAEAEDGRQAGAIPDTVEGLLELPGVGPKMTYLVMDVAWGRNEGICVD 168
            K+ A     R AG IPDT+EGL  LPGVGPKM YL M  AWGR+EGI VD
Sbjct:  226 KQTAAILQERFAGDIPDTIEGLTSLPGVGPKMAYLTMSAAWGRDEGIGVD 275
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BLAST of mRNA_Ecto-sp13_S_contig18632.5843.1 vs. uniprot
Match: A0A428SQV8_9HYPO (Endonuclease III homolog n=1 Tax=Fusarium sp. AF-4 TaxID=1325735 RepID=A0A428SQV8_9HYPO)

HSP 1 Score: 67.4 bits (163), Expect = 9.550e-12
Identity = 32/50 (64.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:   19 KRLAEAEDGRQAGAIPDTVEGLLELPGVGPKMTYLVMDVAWGRNEGICVD 168
            K+ AE    +  G IPDT+EGL  LPGVGPKM YL M VAWGR EGI VD
Sbjct:  171 KQAAEIIRDKWNGDIPDTIEGLTSLPGVGPKMAYLCMSVAWGRTEGIGVD 220
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BLAST of mRNA_Ecto-sp13_S_contig18632.5843.1 vs. uniprot
Match: A0A074WPC8_9PEZI (Endonuclease III homolog n=28 Tax=Aureobasidium TaxID=5579 RepID=A0A074WPC8_9PEZI)

HSP 1 Score: 67.4 bits (163), Expect = 9.770e-12
Identity = 32/50 (64.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:   19 KRLAEAEDGRQAGAIPDTVEGLLELPGVGPKMTYLVMDVAWGRNEGICVD 168
            K  AE    R  G IPDT+EGL+ LPGVGPKM YL M  AWGR+EGI VD
Sbjct:  222 KATAEILRDRFDGDIPDTIEGLVSLPGVGPKMAYLTMSAAWGRDEGIGVD 271
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BLAST of mRNA_Ecto-sp13_S_contig18632.5843.1 vs. uniprot
Match: A0A074YW79_AURSE (Endonuclease III homolog n=1 Tax=Aureobasidium subglaciale (strain EXF-2481) TaxID=1043005 RepID=A0A074YW79_AURSE)

HSP 1 Score: 67.4 bits (163), Expect = 9.810e-12
Identity = 32/50 (64.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:   19 KRLAEAEDGRQAGAIPDTVEGLLELPGVGPKMTYLVMDVAWGRNEGICVD 168
            K  AE    R  G IPDT+EGL+ LPGVGPKM YL M  AWGR+EGI VD
Sbjct:  226 KATAEILRDRFDGDIPDTIEGLVSLPGVGPKMAYLTMSAAWGRDEGIGVD 275
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18632.5843.1 vs. uniprot
Match: A0A428NTL0_9HYPO (Endonuclease III homolog n=8 Tax=Fusarium solani species complex TaxID=232080 RepID=A0A428NTL0_9HYPO)

HSP 1 Score: 67.4 bits (163), Expect = 9.910e-12
Identity = 32/50 (64.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:   19 KRLAEAEDGRQAGAIPDTVEGLLELPGVGPKMTYLVMDVAWGRNEGICVD 168
            K+ AE    +  G IPDT+EGL  LPGVGPKM YL M VAWGR EGI VD
Sbjct:  237 KQAAEIIRDKWNGDIPDTIEGLTSLPGVGPKMAYLCMSVAWGRTEGIGVD 286
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18632.5843.1 vs. uniprot
Match: A0A6A6G488_9PEZI (Endonuclease III homolog n=2 Tax=Elsinoe TaxID=40996 RepID=A0A6A6G488_9PEZI)

HSP 1 Score: 67.0 bits (162), Expect = 1.360e-11
Identity = 31/50 (62.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:   19 KRLAEAEDGRQAGAIPDTVEGLLELPGVGPKMTYLVMDVAWGRNEGICVD 168
            K  AE    +  G IPDT+EGL+ LPGVGPKM YL M  AWGR+EGI VD
Sbjct:  247 KATAEILRDQFGGEIPDTIEGLVSLPGVGPKMAYLTMSAAWGRDEGIGVD 296
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18632.5843.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTS9_ECTSI4.150e-32100.00Endonuclease III homolog n=1 Tax=Ectocarpus silicu... [more]
A0A6H5L2I5_9PHAE2.500e-2694.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A218YZP4_9HELO2.850e-1264.00Endonuclease III homolog n=1 Tax=Marssonina corona... [more]
K2RCR8_MACPH4.250e-1264.00Endonuclease III homolog n=1 Tax=Macrophomina phas... [more]
A0A6J3M2Q0_9PEZI7.300e-1264.00Endonuclease III homolog n=1 Tax=Dissoconium acicu... [more]
A0A428SQV8_9HYPO9.550e-1264.00Endonuclease III homolog n=1 Tax=Fusarium sp. AF-4... [more]
A0A074WPC8_9PEZI9.770e-1264.00Endonuclease III homolog n=28 Tax=Aureobasidium Ta... [more]
A0A074YW79_AURSE9.810e-1264.00Endonuclease III homolog n=1 Tax=Aureobasidium sub... [more]
A0A428NTL0_9HYPO9.910e-1264.00Endonuclease III homolog n=8 Tax=Fusarium solani s... [more]
A0A6A6G488_9PEZI1.360e-1162.00Endonuclease III homolog n=2 Tax=Elsinoe TaxID=409... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18632contigEcto-sp13_S_contig18632:2..364 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score114.8
Seed ortholog evalue1.3e-23
Seed eggNOG ortholog2880.D7FTS9
Preferred nameNTH1
Model size168
KEGG koko:K10773
KEGG Pathwayko03410,map03410
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000702,GO:0000703,GO:0003674,GO:0003824,GO:0003906,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005911,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006285,GO:0006289,GO:0006296,GO:0006464,GO:0006479,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009295,GO:0009506,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0012505,GO:0016278,GO:0016279,GO:0016740,GO:0016741,GO:0016787,GO:0016798,GO:0016799,GO:0018022,GO:0018193,GO:0018205,GO:0019104,GO:0019538,GO:0030054,GO:0032259,GO:0033554,GO:0033683,GO:0034641,GO:0036211,GO:0042644,GO:0042646,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0055044,GO:0071704,GO:0090304,GO:0090305,GO:0140096,GO:0140097,GO:1901360,GO:1901564
Exons2
EggNOG free text desc.oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity
EggNOG OGsCOG0177@1,KOG1921@2759
EC4.2.99.18
Cds size159
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462955.6175761-CDS-Ecto-sp13_S_contig18632:1..901681462955.6175761-CDS-Ecto-sp13_S_contig18632:1..90Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18632 2..90 -
1681462955.6293604-CDS-Ecto-sp13_S_contig18632:285..3551681462955.6293604-CDS-Ecto-sp13_S_contig18632:285..355Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18632 286..355 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462955.639271-UTR-Ecto-sp13_S_contig18632:355..3641681462955.639271-UTR-Ecto-sp13_S_contig18632:355..364Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18632 356..364 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18632.5843.1prot_Ecto-sp13_S_contig18632.5843.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18632 2..355 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18632.5843.1

>prot_Ecto-sp13_S_contig18632.5843.1 ID=prot_Ecto-sp13_S_contig18632.5843.1|Name=mRNA_Ecto-sp13_S_contig18632.5843.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=53bp
MVCKRLAEAEDGRQAGAIPDTVEGLLELPGVGPKMTYLVMDVAWGRNEGI
CVD
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mRNA from alignment at Ecto-sp13_S_contig18632:2..364-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18632.5843.1 ID=mRNA_Ecto-sp13_S_contig18632.5843.1|Name=mRNA_Ecto-sp13_S_contig18632.5843.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=363bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18632:2..364- (Ectocarpus species13 EcNAP12_S_4_19m)
CATATCTTGATGGTGTGCAAACGGTTAGCCGAGGCAGAGGACGGTCGGCA
GGCTGGAGCCATCCCCGATACCGTCGAAGGTGCGTAATAATTCCTTTGGG
CGGACGCAAGGTGGTGATTTCAGCCTTACGGCGAGGTGATTCTCCTGGAA
TTCCGGGAAGGTGAATTCCGGCACTGGGACACCTGAACTCAGGCCTTCAA
CATTTGTCCGGCCACGTTTGCGTGATGACGTGTTTTGCTGCGTCCGCCAC
CCTTGGCCGTTGAACGCACACAAGGTCTGCTCGAACTCCCGGGGGTTGGG
CCGAAGATGACGTATCTCGTCATGGACGTGGCCTGGGGACGGAACGAAGG
GATCTGCGTCGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18632:2..364-

>mRNA_Ecto-sp13_S_contig18632.5843.1 ID=mRNA_Ecto-sp13_S_contig18632.5843.1|Name=mRNA_Ecto-sp13_S_contig18632.5843.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=159bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18632:2..364- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGTGCAAACGGTTAGCCGAGGCAGAGGACGGTCGGCAGGCTGGAGC
CATCCCCGATACCGTCGAAGGTCTGCTCGAACTCCCGGGGGTTGGGCCGA
AGATGACGTATCTCGTCATGGACGTGGCCTGGGGACGGAACGAAGGGATC
TGCGTCGAC
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