mRNA_Ecto-sp13_S_contig1863.5842.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1863.5842.1
Unique NamemRNA_Ecto-sp13_S_contig1863.5842.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1863.5842.1 vs. uniprot
Match: D7G509_ECTSI (Uncharacterized protein n=5 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G509_ECTSI)

HSP 1 Score: 334 bits (856), Expect = 1.110e-111
Identity = 195/246 (79.27%), Postives = 199/246 (80.89%), Query Frame = 1 
Query:    1 QLFTLHLQFSDLQRSNAATVRDFSHYMWWAERTVDSLTGANALLENKLACLEADAQTGHDLYDQFRSDFLCSPRDGETTLSHKDAEISSLKQDNDQLVKANQDKDEEIKLLKAQLAMQLKQPQEGQHTSDAHTDVSTELPSPRVRFENGMTVARLHSTWGSAENVPGVSSFQAKRHPSVSTDSSAATIATAASGTFVSKASRSGTQSVATTTYLDTTADVKAATEFLIADTALAHWWLAATATSAG 738
            QLFTLHLQFSDLQRSNAATVRDFSHYMW AERTVDSLTGANALLENKLACLEAD QTGHDLYDQFRSDFLCS RDGET LSHKDAEISSLKQDN QLVKANQDKDEEIKLLKAQLAMQLKQPQE           +    +PR                       GVSSFQAK HPSVSTDSSAA IATAASGTFVSKASRSGT+SVATTTYLDTTAD KAA EFLIADTALAHWWL+ATATSAG
Sbjct:  144 QLFTLHLQFSDLQRSNAATVRDFSHYMWCAERTVDSLTGANALLENKLACLEADVQTGHDLYDQFRSDFLCSLRDGETALSHKDAEISSLKQDNAQLVKANQDKDEEIKLLKAQLAMQLKQPQEA---------CTAGGEAPRTSA--------------------GVSSFQAKGHPSVSTDSSAAVIATAASGTFVSKASRSGTKSVATTTYLDTTADDKAAAEFLIADTALAHWWLSATATSAG 360
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BLAST of mRNA_Ecto-sp13_S_contig1863.5842.1 vs. uniprot
Match: A0A6H5KBI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBI0_9PHAE)

HSP 1 Score: 268 bits (686), Expect = 1.870e-84
Identity = 169/293 (57.68%), Postives = 179/293 (61.09%), Query Frame = 1 
Query:    1 QLFTLHLQFSDLQRSNAATVRDFSHYMWWAERTVDSLTGANALLENKLACLEADAQTGHDLYDQFRSDFLCSPRDGETTLSH------------------------------------KDAEISSLKQDNDQLVKANQDKDEEIKLLKAQLAMQLKQPQEGQHT-----------------------------------------SDAHTDVSTELPSPR-----------VRFENGMTVARLHSTWGSAENVPGVSSFQAKRHPSVSTDSSAATIATAASGTFVSKASRSGT 615
            QLFTLHLQFSDLQRS AATVRDFSHYMW AER++DSL GANALLEN+LACLEADAQTGHDLYDQFRSDFLCS RDGETTLSH                                    KDAEISSLKQDN QLVK NQDKDEEIKLLKAQLA+Q KQP+EGQHT                                         ++AHTDVSTELPSPR                        + WGSAENVPGVSSFQ   + SV TDSSAATIATAASGTFVSKA+RSGT
Sbjct:  166 QLFTLHLQFSDLQRSIAATVRDFSHYMWCAERSIDSLAGANALLENRLACLEADAQTGHDLYDQFRSDFLCSLRDGETTLSHXFRLCGWHXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDAEISSLKQDNAQLVKVNQDKDEEIKLLKAQLAIQFKQPEEGQHTCERVADVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEANAHTDVSTELPSPRGLIXXXXXXXXXXXXXXXXXXXXXTRWGSAENVPGVSSFQTNNNHSVFTDSSAATIATAASGTFVSKATRSGT 458
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1863.5842.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G509_ECTSI1.110e-11179.27Uncharacterized protein n=5 Tax=Ectocarpus silicul... [more]
A0A6H5KBI0_9PHAE1.870e-8457.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1863contigEcto-sp13_S_contig1863:12493..15159 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size741
Hectar predicted targeting categoryother localisation
Exons5
Cds size741
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462955.539079-CDS-Ecto-sp13_S_contig1863:12492..127721681462955.539079-CDS-Ecto-sp13_S_contig1863:12492..12772Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1863 12493..12772 -
1681462955.5501876-CDS-Ecto-sp13_S_contig1863:13261..133371681462955.5501876-CDS-Ecto-sp13_S_contig1863:13261..13337Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1863 13262..13337 -
1681462955.5599174-CDS-Ecto-sp13_S_contig1863:13977..140861681462955.5599174-CDS-Ecto-sp13_S_contig1863:13977..14086Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1863 13978..14086 -
1681462955.5704253-CDS-Ecto-sp13_S_contig1863:14481..145951681462955.5704253-CDS-Ecto-sp13_S_contig1863:14481..14595Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1863 14482..14595 -
1681462955.5808163-CDS-Ecto-sp13_S_contig1863:14997..151591681462955.5808163-CDS-Ecto-sp13_S_contig1863:14997..15159Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1863 14998..15159 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1863.5842.1prot_Ecto-sp13_S_contig1863.5842.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1863 12493..15159 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1863.5842.1

>prot_Ecto-sp13_S_contig1863.5842.1 ID=prot_Ecto-sp13_S_contig1863.5842.1|Name=mRNA_Ecto-sp13_S_contig1863.5842.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=247bp
QLFTLHLQFSDLQRSNAATVRDFSHYMWWAERTVDSLTGANALLENKLAC
LEADAQTGHDLYDQFRSDFLCSPRDGETTLSHKDAEISSLKQDNDQLVKA
NQDKDEEIKLLKAQLAMQLKQPQEGQHTSDAHTDVSTELPSPRVRFENGM
TVARLHSTWGSAENVPGVSSFQAKRHPSVSTDSSAATIATAASGTFVSKA
SRSGTQSVATTTYLDTTADVKAATEFLIADTALAHWWLAATATSAG*
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mRNA from alignment at Ecto-sp13_S_contig1863:12493..15159-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1863.5842.1 ID=mRNA_Ecto-sp13_S_contig1863.5842.1|Name=mRNA_Ecto-sp13_S_contig1863.5842.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2667bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1863:12493..15159- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCTGTTCACTCTCCACCTCCAGTTTAGCGACCTTCAGCGGTCGAACGC
CGCGACCGTGAGGGACTTCTCGCACTACATGTGGTGGGCCGAAAGAACCG
TCGACTCGCTTACCGGCGCCAATGCCCTGCTCGAGAACAAACTTGCTTGC
TTGGAGGCAGATGTGAGTCAATTATTGGTACAGGGGAGGGAGGGGGGGGT
ACCAGTTTGGGACGTCTAGAGTCTCCAGACGTTTATCATGTGAGAGGGAA
GACCGACTCAATGGAAGCTATACGCTAGGCGATGACCTCCTTCCTGATTC
GAAATGCAACAAAGCCAACGTTGCGATGTAATCCTCTAACGGTGGATTTC
GGATGAGACCATTTCTCAGCCCACGCACAACCGCAATCGATCGCACGCAC
ACCCTGTGCTTGTGCTGTACCCTCTTGGACCCCTACCATACTTGACGCTT
GCTTTGTGCAAGTGCATACGGGCTCAGGATTTGCGGGTGCCAACTGCAGT
GTATCAACCCACCAATACGGTGTTTTCGCTACATCGCTGGCTCGACGCTC
GCGACCACAGGCAGGCACAGACTGGGCACGACCTCTATGACCAGTTTCGA
TCCGACTTCCTCTGCTCTCCTCGGGACGGAGAGACGACGCTCAGCCACAA
GGATGCGGAGATATCCTCTCTGAAGCAGGTGGGTCATGCAGTAGGTTGTG
ACGGGATGACAACAGAAGGGAAACTGCTGCTGCTGCTGCTGCTGCTAACC
GTATGCGCACTGAGTGCACTATTCACGAGAATTCCTGGTAGGTTTCTCCG
GTTGACGTCGTGGCAATCCTACCGTTGTTCTACACGGTGAGATCGACGGG
GTAGAAACCATTCAACGCATGTTTGAACCACCCTGGTCACGCTCTACCCA
ACAAAGCAGTGCTCTCTATCGTGAACAACGCTTCAGGTACCCACCTCGAG
GGCCAAACCTAAGGTAGACCAAGATGAGTGTGAAGCCGCAGTAGCTGTGA
CAGCATGTCATGATACCACCACCACCGCTTCCCCCGCCCCCGCGCGCTCT
GTGCTGAGGTCAAATGATGACAGGACAACGATCAGCTCGTCAAGGCCAAT
CAAGACAAGGACGAGGAGATCAAGCTCCTGAAGGCTCAGCTGGCTATGCA
GCTCAAGCAGCCTCAAGAAGGTCAGCATACATGTGAACGTGTCGCCGATG
TGGTGTACGCTAGTCGGGGAACACCCCCACATCGTGTGCAGAGATCGCCT
ATACTCACGCCCGTGGATACCCTTTGAGCGCTTGCTTTGAAGAAGGCTTT
CGACGAACGATCGTGGTACATTGCATATATATGTGGGCATCACAACCTCA
GCCGAAACGATGACTCGCGAGACGTACACATAATTGGTGGAAGGGTGTGC
TTACCAATTAGGTTGGTCATCAACGTCTTCATGGGATGGGAATGGTCGTG
TTGCAGCTCGTCCTCTACCAGTTTGTGTTTACTTCCTACTCGCACGGTGC
ATGGGAGACAACGATTTCAGGAATCAGTCAAGCACTCAACAACCTTGGCG
CATGGTTTTTGTACCGTCATTGTTTCCCATATACAATGTAGTCTAGAGAG
CAAAGCGAATGTTCAAATGTTGAACGACGGGTGTTCGAGTGGATGCGTCC
CGTGCCCTCTCCCAACGACATGCTACGCTAGAAACCAAGCAATGCACAAA
CCCGGTCGCGAGTGGCGTCAAGAGCGCAACACTCCTCCTGTGTGTCTCAC
ACAACGCGGGCGTACCAACACAGCGTTCTGTGTGCGCTCTCTCGTTGCGT
TGTGTCAATTTCGCAGGCGGAGCCGACGCCCACACCGACGTCTCCACCGA
GCTCCCCAGCCCCAGGGTACGATTCGAAAACGGCATGACGGTTGCTCGGT
AGACTCGCCAGCAAACGGTTTCGGCCGTTTGTTCTCTGTTTCAAGTCCCC
TTTGATGGTGGGTGCTCGACGACTGTTGTGACGTTGTTATGGCGATGCGT
GCAGGGGGTTGCTCTGTACCAGGTATCACTGACGACTTCGTACAAGGTGT
GCTTTGCGATGCTTATTTGATGGGGCGTTACGGGTGGTATACCTCGCAAT
ACCATTTCCAGTAGGATAGATCTTCCATGTACCTTCGAGCAATCTAGGGG
GAAGTCGGGGGCGAAGTGACGCACAACCGTCTTCTTCAAGCGCTTTGTTG
GCGTATTTCGCCCATTCCATCCCACCAGACGTGATTCAAGGAATGTGTGC
ATACAGCAAGCAACAACACCGGCCAGCTTTCCTATTTGTCCACCGGTTCT
ATGGTCATCCAACTTGCATGCTTCCTCCCTCTGTTGCGGTGGTGCTTCTC
TTCCGCGCCCGCCGACTCTGTCCTATCGAACAAACAGCTTGCACAGCACG
TGGGGAAGCGCCGAGAACGTCCCGGGTGTCTCAAGTTTCCAGGCCAAGCG
CCACCCGTCCGTCTCCACCGACTCGTCCGCCGCTACGATCGCCACCGCCG
CTTCGGGGACCTTCGTCTCGAAGGCCTCCCGTTCGGGCACCCAGTCGGTC
GCCACGACGACCTACCTGGACACCACCGCCGATGTCAAGGCGGCGACGGA
GTTCCTCATTGCGGACACCGCGCTCGCACACTGGTGGCTGGCGGCGACAG
CTACCTCGGCTGGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1863:12493..15159-

>mRNA_Ecto-sp13_S_contig1863.5842.1 ID=mRNA_Ecto-sp13_S_contig1863.5842.1|Name=mRNA_Ecto-sp13_S_contig1863.5842.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=741bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1863:12493..15159- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCTGTTCACTCTCCACCTCCAGTTTAGCGACCTTCAGCGGTCGAACGC
CGCGACCGTGAGGGACTTCTCGCACTACATGTGGTGGGCCGAAAGAACCG
TCGACTCGCTTACCGGCGCCAATGCCCTGCTCGAGAACAAACTTGCTTGC
TTGGAGGCAGATGCACAGACTGGGCACGACCTCTATGACCAGTTTCGATC
CGACTTCCTCTGCTCTCCTCGGGACGGAGAGACGACGCTCAGCCACAAGG
ATGCGGAGATATCCTCTCTGAAGCAGGACAACGATCAGCTCGTCAAGGCC
AATCAAGACAAGGACGAGGAGATCAAGCTCCTGAAGGCTCAGCTGGCTAT
GCAGCTCAAGCAGCCTCAAGAAGGTCAGCATACATCCGACGCCCACACCG
ACGTCTCCACCGAGCTCCCCAGCCCCAGGGTACGATTCGAAAACGGCATG
ACGGTTGCTCGCTTGCACAGCACGTGGGGAAGCGCCGAGAACGTCCCGGG
TGTCTCAAGTTTCCAGGCCAAGCGCCACCCGTCCGTCTCCACCGACTCGT
CCGCCGCTACGATCGCCACCGCCGCTTCGGGGACCTTCGTCTCGAAGGCC
TCCCGTTCGGGCACCCAGTCGGTCGCCACGACGACCTACCTGGACACCAC
CGCCGATGTCAAGGCGGCGACGGAGTTCCTCATTGCGGACACCGCGCTCG
CACACTGGTGGCTGGCGGCGACAGCTACCTCGGCTGGGTGA
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