mRNA_Ecto-sp13_S_contig18629.5841.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18629.5841.1
Unique NamemRNA_Ecto-sp13_S_contig18629.5841.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18629.5841.1 vs. uniprot
Match: A0A6H5L1B9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L1B9_9PHAE)

HSP 1 Score: 351 bits (900), Expect = 3.260e-116
Identity = 180/193 (93.26%), Postives = 182/193 (94.30%), Query Frame = 1 
Query:    1 NPHTPHPGRAPDSPLSDIVELRDLLIPSKPVVAMFPVGVGCGGTVDGLAAESGSGLFGLPENAGVFQIGTNVTHAGRPDGRPFRLVDVQPRPVEDIVSDLKSKFGMALHMEVEYSRRFEGCHHGTETGRSGDSSSDNEEGPGSEESRSPLPPKADVSWAHILAQNQHKLQGLDEWETIRDSQIKPSVMRALDV 579
            NPHTPHPGRAPDSPLSDIVELRDLL PSKPVVAMFPVGVGCG TVDGLAAESGSGL GLPENAG+FQIGTNVTHA RPDGRPFRLVDVQ RPVEDIVSDLKSKFGMALHMEVEYSRRFEG   GTETGRSGDSSSD +EG GSEESRSPLPPKADVSWAHILAQNQHKLQGLDEWETIRDSQIKPSVMRALD 
Sbjct:  249 NPHTPHPGRAPDSPLSDIVELRDLLTPSKPVVAMFPVGVGCGATVDGLAAESGSGLLGLPENAGIFQIGTNVTHARRPDGRPFRLVDVQSRPVEDIVSDLKSKFGMALHMEVEYSRRFEGKQRGTETGRSGDSSSD-DEGAGSEESRSPLPPKADVSWAHILAQNQHKLQGLDEWETIRDSQIKPSVMRALDT 440
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BLAST of mRNA_Ecto-sp13_S_contig18629.5841.1 vs. uniprot
Match: A0A7S2XYW7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYW7_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 9.170e-5
Identity = 21/44 (47.73%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:  448 LPPKADVSWAHILAQNQHKLQGLDEWETIRDSQIKPSVMRALDV 579
            LP K D++W HIL +   +L+GLDEW  I ++Q+ P++ RAL+V
Sbjct:   26 LPKKMDLAWGHILTEKHQELEGLDEWLYILETQVVPTLDRALEV 69
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18629.5841.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L1B9_9PHAE3.260e-11693.26Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2XYW7_9STRA9.170e-547.73Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18629contigEcto-sp13_S_contig18629:212..2817 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size588
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-25_000400.1
Cds size588
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462955.4795127-CDS-Ecto-sp13_S_contig18629:211..3011681462955.4795127-CDS-Ecto-sp13_S_contig18629:211..301Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18629 212..301 -
1681462955.4903398-CDS-Ecto-sp13_S_contig18629:1147..13421681462955.4903398-CDS-Ecto-sp13_S_contig18629:1147..1342Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18629 1148..1342 -
1681462955.5012949-CDS-Ecto-sp13_S_contig18629:1894..19851681462955.5012949-CDS-Ecto-sp13_S_contig18629:1894..1985Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18629 1895..1985 -
1681462955.5098162-CDS-Ecto-sp13_S_contig18629:2605..28171681462955.5098162-CDS-Ecto-sp13_S_contig18629:2605..2817Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18629 2606..2817 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18629.5841.1prot_Ecto-sp13_S_contig18629.5841.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18629 212..2817 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18629.5841.1

>prot_Ecto-sp13_S_contig18629.5841.1 ID=prot_Ecto-sp13_S_contig18629.5841.1|Name=mRNA_Ecto-sp13_S_contig18629.5841.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=196bp
NPHTPHPGRAPDSPLSDIVELRDLLIPSKPVVAMFPVGVGCGGTVDGLAA
ESGSGLFGLPENAGVFQIGTNVTHAGRPDGRPFRLVDVQPRPVEDIVSDL
KSKFGMALHMEVEYSRRFEGCHHGTETGRSGDSSSDNEEGPGSEESRSPL
PPKADVSWAHILAQNQHKLQGLDEWETIRDSQIKPSVMRALDVSD*
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mRNA from alignment at Ecto-sp13_S_contig18629:212..2817-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18629.5841.1 ID=mRNA_Ecto-sp13_S_contig18629.5841.1|Name=mRNA_Ecto-sp13_S_contig18629.5841.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2606bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18629:212..2817- (Ectocarpus species13 EcNAP12_S_4_19m)
AACCCTCACACGCCACACCCTGGAAGAGCACCAGATAGCCCACTCTCGGA
CATCGTCGAGCTCAGGGACCTCCTCATCCCGAGCAAGCCCGTGGTGGCCA
TGTTCCCGGTCGGAGTGGGATGCGGCGGAACCGTTGACGGTCTGGCTGCG
GAGAGTGGCAGCGGTCTGTTCGGCTTGCCTGAGAACGCGGGGGTCTTCCA
GATCGGCACCAAGTGAGTCAACGGTCGGAGATGTTTTTCAGTCAAGCGTT
TGGACACTGGGCAAGCAAATGTTACATTACTTCGAAGCATGTCCTTTCTT
TTTTGCCAGGGAACGACTGGCCTTTTGTACCCTAGACCGCCCGGTGACTG
CAGCACCGTGTGCCAAGTTGTACACGAGTGTATCCTTGATTTATTTTGGT
GTTTTCAGCCCCGACATGGCGCTGTTTGACGTGTGCGCGTGGCGACCTCA
TGTTACCCGGAGTATTCCATGACTACATGCAGTTTGCTTCGCTTTCAACG
CGTTTGTTTCTCCTGCAGCACTCCTGTCACAGCATATGACAATACTATGC
ATATGGCGTCGTCAAAGCTGAATAAACAAAAGCATGCTCCACATGCTGCT
GCCGTCCATCGTTGGCATGAACAAAAAAAGCATACAACCAAAGACGCTTG
TTCATGGCACCCACCCACATACCCCAAATGAAGACGAGGACGCTGATGGG
CCTTGCCTGACTGCCATTACTTCACAGCAGTCATTGAAGACAAGAAAAAG
TCACGCACCAACCCGTCCGGCACTCTCCTCTCCCACGCTCACTCGATTGC
CCCGCCACCGGGTGTCTTATGTCTATCTCCAGCGTAACGCATGCAGGACG
TCCAGATGGCCGCCCTTTCAGGCTTGTGGACGTCCAACCCAGGCCTGTAG
AGGACATTGTTTCTGACCTCAAGGTACAAGACATCACTGGTGTAGTAGGC
GCTGATTTTTGGTCCGTTTTTCACTGGCTTCTGACCGTTTGTGGGACATG
AGAAGCTTCCGAGAATCTTAATATCATTTGTTGTGGTTGCTACGAGATTG
TGGGCAGGACATATGGCGATGAAATACAAAAAGAGGTGAACCATGCTAAA
CCACTGACGAATTTCCACGCCAGAGGGTGTCAGCGTGTCAGCCTCGGGCC
TGTTGCTCTTGAATGAATCCGGTCCGACCTCTGAGTGGTTTTGAGAGGTA
CAGCAGGAAAATAGGGGGCCGACGCTCTACTCAAAAGGGGGCGTGGTAGT
TCGAAGTATGTGATGGCAGTAAGTGACTTGCTGCAGGAGATAAATTTCTT
GTTCGTTGGGGTAGGCGATGCAACGGGTGGGGCAAAGCTGCTTTTAGAGT
TCAGAATGTTTTCGAGGCGAAAAAGCCGGACGGTACGCTAGATAGACACC
ACTATTATCAACACCACCACCCACCACCCACCACCACAATTGCCAACTAC
AACAACACGCCTCTTGACATTTCAGTCGAAGTTCGGCATGGCACTTCACA
TGGAAGTGGAGTACTCGAGGCGATTCGAGGGATGTCACCATGGGACGGAG
ACGGGGCGAAGCGGGGACAGCAGCAGTGACAATGAGGAAGGGCCCGGCAG
TGAAGAATCCCGATCGCCTCTCCCGCCGAAGGCTGACGTCAGCTGGGCGC
ACATCCTAGCACAAAACCAGGTGTGATGGTGTGATTGGTCGATTGGGGAT
CGGTTGGTTACAGCAGTGCGGTGAAACTTTGAAGAAGAATACCTCAGGAG
TGAAAAATTAATAGCAAAAGAATGGGTGAGCCTGTCACAGTGCACTGTGA
ACTCATTGCCCACGTGCATTCTTGGACTCTTAGCTATCTGTGGATCTGTG
GACAGAGATGGATCTGTGGGTGCAGTGAATAGAGACGAATTTATTTGTTA
ACATAAGAACATGAGCAAAAAGTATGTTTTGGATTGTCGGCTGGAAGCGT
CATACTTGCGGGAATCCCGCGTTGAAGGACAAACCGAAAAAGCACGGGGA
ACAACGAATAGAGTGAATTGTCGTTTGAGTGCTATCCTGTCGGTGGAGCT
CCCGAGCGGTTCTCTCTGTTGTCGTTGTGATTACCACATCACCACATGTG
TTGGTAACACAGGCGCGGAAATGGTGTAGATGGGTGAACCCTCCTGGTGG
TCTTGCGCGTCTCCCAGCGCTCTCGTCGTGACCTGCGGTTCTCGTGATGC
TTGTCTAGGACGTAAAACAGTATTATGTGGTCTTTTTTTTGTCTATTTTG
CTTGTTGTCCCTTGTCTCGCTTATCTTACTTCGTGAACCTGCCAGGTGAT
CGTTATAACCGTTCTCTGTGTTTTCCACTCCGTTGTAAAACATGAAGTAA
TTGTGGGTGACCGTTTGGGTTGTGACCCCATTTAGTCCATGGGTCCTCTT
CTTGCTCATCCTCTTCCTCTCTCTCCCTCTCTCCCTCTCTCCCTCCCTCC
CTCCCTCCCTCCTTTTCTATCGCTCCTCGGTATCCGTGGCACGGACCTTC
CGCAACATCAACCCAGCACAAGCTCCAGGGGCTAGATGAGTGGGAAACCA
TCCGTGACAGTCAGATCAAGCCGTCGGTCATGCGAGCGTTAGACGTGAGT
GACTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18629:212..2817-

>mRNA_Ecto-sp13_S_contig18629.5841.1 ID=mRNA_Ecto-sp13_S_contig18629.5841.1|Name=mRNA_Ecto-sp13_S_contig18629.5841.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=588bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18629:212..2817- (Ectocarpus species13 EcNAP12_S_4_19m)
AACCCTCACACGCCACACCCTGGAAGAGCACCAGATAGCCCACTCTCGGA
CATCGTCGAGCTCAGGGACCTCCTCATCCCGAGCAAGCCCGTGGTGGCCA
TGTTCCCGGTCGGAGTGGGATGCGGCGGAACCGTTGACGGTCTGGCTGCG
GAGAGTGGCAGCGGTCTGTTCGGCTTGCCTGAGAACGCGGGGGTCTTCCA
GATCGGCACCAACGTAACGCATGCAGGACGTCCAGATGGCCGCCCTTTCA
GGCTTGTGGACGTCCAACCCAGGCCTGTAGAGGACATTGTTTCTGACCTC
AAGTCGAAGTTCGGCATGGCACTTCACATGGAAGTGGAGTACTCGAGGCG
ATTCGAGGGATGTCACCATGGGACGGAGACGGGGCGAAGCGGGGACAGCA
GCAGTGACAATGAGGAAGGGCCCGGCAGTGAAGAATCCCGATCGCCTCTC
CCGCCGAAGGCTGACGTCAGCTGGGCGCACATCCTAGCACAAAACCAGCA
CAAGCTCCAGGGGCTAGATGAGTGGGAAACCATCCGTGACAGTCAGATCA
AGCCGTCGGTCATGCGAGCGTTAGACGTGAGTGACTGA
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