prot_Ecto-sp13_S_contig18626.5840.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig18626.5840.1
Unique Nameprot_Ecto-sp13_S_contig18626.5840.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length129
Homology
BLAST of mRNA_Ecto-sp13_S_contig18626.5840.1 vs. uniprot
Match: D7G8E5_ECTSI (Putative retinoblastoma n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8E5_ECTSI)

HSP 1 Score: 234 bits (596), Expect = 7.370e-69
Identity = 115/124 (92.74%), Postives = 118/124 (95.16%), Query Frame = 0
Query:    6 QVWTVIKRCVAQRTEILKDRHLHHVILCSTYSVCKVNGVTTEVTFKRIIEQYKQLTGAGGGGLSGGVGTPRLSVVKDILLRRGHDEGAGGDGARGPLQEERGDIIKFYNEVYIPAMKQFVLEFK 129
            QVWTVIKRCVAQRTEILKDRHLHHVILCSTYSVCKVNGVT EVTFKRIIEQYKQL GAGGGGLSGGVGTPRLSVVKDILL+RGHDE AGG+GA  P QEERGDIIKFYN+VYIPAMKQFVLEFK
Sbjct:  898 QVWTVIKRCVAQRTEILKDRHLHHVILCSTYSVCKVNGVTPEVTFKRIIEQYKQLAGAGGGGLSGGVGTPRLSVVKDILLKRGHDEEAGGEGAGEPQQEERGDIIKFYNKVYIPAMKQFVLEFK 1021          
BLAST of mRNA_Ecto-sp13_S_contig18626.5840.1 vs. uniprot
Match: A0A6H5JHA1_9PHAE (RB_A domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHA1_9PHAE)

HSP 1 Score: 233 bits (594), Expect = 1.500e-68
Identity = 117/125 (93.60%), Postives = 118/125 (94.40%), Query Frame = 0
Query:    6 QVWTVIKRCVAQRTEILKDRHLHHVILCSTYSVCKVNGVTTEVTFKRIIEQYKQLTGAGGGGLSGGVGTPRLSVVKDILLRRGHDEGAGG-DGARGPLQEERGDIIKFYNEVYIPAMKQFVLEFK 129
            QVWTVIKRCVAQRTEILKDRHLHHVILCSTYSVCKVNGVT EVTFKRIIEQYKQL GAGGGGLSGGVGTPRLSVVKDILLRRGHDEGAGG +G   PLQEERGDIIKFYN VYIPAMKQFVLEFK
Sbjct: 1050 QVWTVIKRCVAQRTEILKDRHLHHVILCSTYSVCKVNGVTPEVTFKRIIEQYKQLAGAGGGGLSGGVGTPRLSVVKDILLRRGHDEGAGGGEGGGEPLQEERGDIIKFYNMVYIPAMKQFVLEFK 1174          
BLAST of mRNA_Ecto-sp13_S_contig18626.5840.1 vs. uniprot
Match: A0A067CHR0_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CHR0_SAPPC)

HSP 1 Score: 108 bits (269), Expect = 8.780e-25
Identity = 52/129 (40.31%), Postives = 76/129 (58.91%), Query Frame = 0
Query:    1 AAYVQQVWTVIKRCVAQRTEILKDRHLHHVILCSTYSVCKVNGVTTEVTFKRIIEQYKQLTGAGGGGLSGGVGTPRLSVVKDILLRRGHDEGAGGDGARGPLQEERGDIIKFYNEVYIPAMKQFVLEFK 129
            A Y+ Q+WT +K C++   E+L+DRH+ HVILCS Y VCKVN V  EVTFKR++E YK+   A          + + ++V++I L +                  +GD+IKFYN  YIP +K F+L+F+
Sbjct:  630 ATYLNQIWTSVKECISNHAELLRDRHVDHVILCSFYGVCKVNHVVPEVTFKRVLEAYKRTYPA----------SAKAAIVREIPLDK---------------PSIKGDVIKFYNRCYIPTLKAFLLQFQ 733          
BLAST of mRNA_Ecto-sp13_S_contig18626.5840.1 vs. uniprot
Match: A0A8K1CKQ6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CKQ6_PYTOL)

HSP 1 Score: 107 bits (267), Expect = 1.660e-24
Identity = 59/140 (42.14%), Postives = 77/140 (55.00%), Query Frame = 0
Query:    1 AAYVQQVWTVIKRCVAQRTEILKDRHLHHVILCSTYSVCKVNGVTTEVTFKRIIEQYKQLT----GAGGGGLSGGVGTPRLSVVKDILLRRGHDEGAGGDGARGPLQE-------ERGDIIKFYNEVYIPAMKQFVLEFK 129
            A Y+ Q WT IK C++ + ++L+DRHL HV+LCS Y VCKVN V  EVTFKRII+ YK+L     G  G    G       +     + R  HD           ++E        RGDIIKFYN  +IP MK F+L+F+
Sbjct:  791 AKYLNQAWTAIKECLSSQHQLLRDRHLDHVVLCSLYGVCKVNHVKPEVTFKRIIDCYKKLQTPQWGIHGSSAHGNNAAAHAAFASASISRNSHDI----------IREIKLDDHNTRGDIIKFYNRCFIPTMKVFLLQFQ 920          
BLAST of mRNA_Ecto-sp13_S_contig18626.5840.1 vs. uniprot
Match: A0A2D4CF97_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CF97_PYTIN)

HSP 1 Score: 107 bits (266), Expect = 2.320e-24
Identity = 62/139 (44.60%), Postives = 79/139 (56.83%), Query Frame = 0
Query:    1 AAYVQQVWTVIKRCVAQRTEILKDRHLHHVILCSTYSVCKVNGVTTEVTFKRIIEQYKQL------TGAGGGGLSGGVGTP----RLSVVKDILLRRGHDEGAGGDGARGPLQEERGDIIKFYNEVYIPAMKQFVLEFK 129
            AA + QVWT IK C++   ++LKDRHL  VILCS Y VCKVN V  EVTFKRII+ YK+L      +       S  +  P       V++DILL    D+           +  RGDIIKFYN  +IP MK F+L+F+
Sbjct: 1233 AAVLNQVWTAIKECISTHHDLLKDRHLDQVILCSIYGVCKVNHVKPEVTFKRIIDAYKKLQTPHWSSNTNSAFSSASLARPSSQHNRDVIRDILL----DD-----------RRSRGDIIKFYNRCFIPTMKVFLLQFQ 1356          
BLAST of mRNA_Ecto-sp13_S_contig18626.5840.1 vs. uniprot
Match: A0A485L9V0_9STRA (Aste57867_17626 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L9V0_9STRA)

HSP 1 Score: 106 bits (265), Expect = 3.030e-24
Identity = 52/129 (40.31%), Postives = 75/129 (58.14%), Query Frame = 0
Query:    1 AAYVQQVWTVIKRCVAQRTEILKDRHLHHVILCSTYSVCKVNGVTTEVTFKRIIEQYKQLTGAGGGGLSGGVGTPRLSVVKDILLRRGHDEGAGGDGARGPLQEERGDIIKFYNEVYIPAMKQFVLEFK 129
            A Y+ QVWT +K C++   ++L+DRHL H++LCS Y VCKVN V  EVTFKRI++ YK+L               + S+V++I L               P    +GD+IKFYN  +IP +K F+L+F+
Sbjct:  609 APYLNQVWTTVKECISGHHDLLRDRHLDHMLLCSFYGVCKVNHVVPEVTFKRILDAYKRLYPT----------VSKSSIVREIPLD--------------PTATTKGDVIKFYNRCFIPTLKAFLLQFQ 713          
BLAST of mRNA_Ecto-sp13_S_contig18626.5840.1 vs. uniprot
Match: A0A024GK70_9STRA (Uncharacterized protein n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024GK70_9STRA)

HSP 1 Score: 104 bits (260), Expect = 1.460e-23
Identity = 55/128 (42.97%), Postives = 80/128 (62.50%), Query Frame = 0
Query:    4 VQQVWTVIKRCVAQRTEILKDRHLHHVILCSTYSVCKVNGVTTEVTFKRIIEQYKQL-TGAGGGGLSGGVGTPRLSVVKDILLRRGHDEGAGGDGARGPLQE-ERGDIIKFYNEVYIPAMKQFVLEFK 129
            + QVWT +K C+    E++KDRH+ H+ILCS Y VCKVN +  EVTF+R+I+ YK+L T        G +G+    +++ I L    D  A  + +  P +   RGDIIKFYN+ +I AMK F+L+F+
Sbjct:  818 LNQVWTAVKECLTYHHELVKDRHVDHIILCSLYGVCKVNLIKPEVTFRRVIDVYKKLQTPHWAIHRPGTIGSTASDIIRHIRLV---DASASSNSSAAPRESVPRGDIIKFYNKCFITAMKVFLLQFQ 942          
BLAST of mRNA_Ecto-sp13_S_contig18626.5840.1 vs. uniprot
Match: A0A1W0A2A8_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A2A8_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.990e-23
Identity = 54/129 (41.86%), Postives = 76/129 (58.91%), Query Frame = 0
Query:    1 AAYVQQVWTVIKRCVAQRTEILKDRHLHHVILCSTYSVCKVNGVTTEVTFKRIIEQYKQLTGAGGGGLSGGVGTPRLSVVKDILLRRGHDEGAGGDGARGPLQEERGDIIKFYNEVYIPAMKQFVLEFK 129
            A Y+ Q+WT +K C++   E+LKDRHL H+ILCS Y VCKVN V  EVTFKR++E YK+   +            + S+V++I L           GA       +GD+IKFYN  +IP +K F+L+F+
Sbjct:  622 AKYLNQIWTCVKECISTYQELLKDRHLDHLILCSFYGVCKVNHVLPEVTFKRVLEAYKRTYPS----------AAKSSIVREIPL-----------GAN-----VKGDVIKFYNRCFIPTLKGFLLQFQ 724          
BLAST of mRNA_Ecto-sp13_S_contig18626.5840.1 vs. uniprot
Match: A0A1V9YMN7_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YMN7_9STRA)

HSP 1 Score: 102 bits (254), Expect = 9.220e-23
Identity = 50/127 (39.37%), Postives = 73/127 (57.48%), Query Frame = 0
Query:    3 YVQQVWTVIKRCVAQRTEILKDRHLHHVILCSTYSVCKVNGVTTEVTFKRIIEQYKQLTGAGGGGLSGGVGTPRLSVVKDILLRRGHDEGAGGDGARGPLQEERGDIIKFYNEVYIPAMKQFVLEFK 129
            Y+ QVWT +K C++   E+L++RHL H+ILCS Y VCKVN V  EVTFKR+ + YK+   A            + S++++I L  G                 +GD+IKFYN  +IP +K F+L+F+
Sbjct:  639 YLNQVWTCVKECISNHQELLRNRHLDHLILCSFYGVCKVNRVVPEVTFKRVTDAYKRTYPA----------AAKSSIIREIPLDHG----------------VKGDVIKFYNRCFIPTLKGFLLQFQ 739          
BLAST of mRNA_Ecto-sp13_S_contig18626.5840.1 vs. uniprot
Match: F0WHE8_9STRA (Uncharacterized protein AlNc14C100G6011 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WHE8_9STRA)

HSP 1 Score: 102 bits (254), Expect = 9.370e-23
Identity = 55/128 (42.97%), Postives = 77/128 (60.16%), Query Frame = 0
Query:    4 VQQVWTVIKRCVAQRTEILKDRHLHHVILCSTYSVCKVNGVTTEVTFKRIIEQYKQL-TGAGGGGLSGGVGTPRLSVVKDILLRRGHDEGAGGDGARGPLQE-ERGDIIKFYNEVYIPAMKQFVLEFK 129
            + QVWT +K C+    E++KDRH+ H+ILCS Y VCKVN +  EVTF+R+IE YK+L T        G  G+    +++ I L    D       +  P +   RGDIIKFYN+ +I AMK F+L+F+
Sbjct:  814 LNQVWTAVKECLTYHHELVKDRHVDHIILCSLYGVCKVNLIKPEVTFRRVIEVYKKLQTPHWAIHRPGTTGSTASDIIRHIRLV---DASTSSKSSTAPRESVPRGDIIKFYNKCFIAAMKVFLLQFQ 938          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18626.5840.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8E5_ECTSI7.370e-6992.74Putative retinoblastoma n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JHA1_9PHAE1.500e-6893.60RB_A domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A067CHR0_SAPPC8.780e-2540.31Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A8K1CKQ6_PYTOL1.660e-2442.14Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4CF97_PYTIN2.320e-2444.60Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A485L9V0_9STRA3.030e-2440.31Aste57867_17626 protein n=1 Tax=Aphanomyces stella... [more]
A0A024GK70_9STRA1.460e-2342.97Uncharacterized protein n=2 Tax=Albugo candida Tax... [more]
A0A1W0A2A8_9STRA1.990e-2341.86Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A1V9YMN7_9STRA9.220e-2339.37Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
F0WHE8_9STRA9.370e-2342.97Uncharacterized protein AlNc14C100G6011 n=1 Tax=Al... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002719Retinoblastoma-associated protein, B-boxPFAMPF01857RB_Bcoord: 4..122
e-value: 6.1E-28
score: 97.5
NoneNo IPR availableGENE3D1.10.472.10coord: 1..129
e-value: 7.0E-31
score: 109.1
IPR028309Retinoblastoma protein familyPANTHERPTHR13742RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATEDcoord: 4..128
IPR036915Cyclin-like superfamilySUPERFAMILY47954Cyclin-likecoord: 5..128

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18626contigEcto-sp13_S_contig18626:320..1746 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18626.5840.1mRNA_Ecto-sp13_S_contig18626.5840.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig18626 320..1746 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig18626.5840.1 ID=prot_Ecto-sp13_S_contig18626.5840.1|Name=mRNA_Ecto-sp13_S_contig18626.5840.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=129bp
AAYVQQVWTVIKRCVAQRTEILKDRHLHHVILCSTYSVCKVNGVTTEVTF
KRIIEQYKQLTGAGGGGLSGGVGTPRLSVVKDILLRRGHDEGAGGDGARG
PLQEERGDIIKFYNEVYIPAMKQFVLEFK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002719RB_B
IPR028309RB_fam
IPR036915Cyclin-like_sf