prot_Ecto-sp13_S_contig18624.5839.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig18624.5839.1
Unique Nameprot_Ecto-sp13_S_contig18624.5839.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length347
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18624.5839.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008615FNIPPFAMPF05725FNIPcoord: 173..206
e-value: 1.7E-4
score: 21.7
coord: 77..119
e-value: 3.5E-8
score: 33.5
coord: 256..298
e-value: 3.1E-6
score: 27.3
coord: 210..251
e-value: 1.1E-5
score: 25.5
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 9..344
e-value: 1.7E-10
score: 41.9
NoneNo IPR availablePANTHERPTHR32134UNCHARACTERIZEDcoord: 3..188
NoneNo IPR availablePANTHERPTHR32134:SF91FNIP REPEAT-CONTAINING PROTEIN-RELATEDcoord: 3..188
NoneNo IPR availablePANTHERPTHR32134UNCHARACTERIZEDcoord: 131..341
NoneNo IPR availablePANTHERPTHR32134:SF91FNIP REPEAT-CONTAINING PROTEIN-RELATEDcoord: 131..341
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 16..320

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18624contigEcto-sp13_S_contig18624:1713..2753 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18624.5839.1mRNA_Ecto-sp13_S_contig18624.5839.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig18624 1423..2753 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig18624.5839.1 ID=prot_Ecto-sp13_S_contig18624.5839.1|Name=mRNA_Ecto-sp13_S_contig18624.5839.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=347bp
MAFGVQFNQPIDDVAWPASLQEFILSDSVCAAFDQRIDNVKWPSCLRRLI
LGWQVSHSLDDVSWPESLQQLTLSDCFDQSIQEVKWPPLLQQLTFGYQFN
TPIDFISWPPSLKELTFGCHFDCEVGLVQWPPSLEKITFGLKFNQKIEGI
LFPPFLLEALTGDPDFFKAIEWPNSLQEMTFGGEFNQPIERVAWPASLQR
LTFANFGGEFNHPIDNVSWPASLQDLNLGAKFNQPIHRVMWPLSLLKLAF
DTFGEFNQPIHQVEWPASLKDLTLGAEFNQSNHRVSWPASLQCLGFGDGF
NQPIDQVVWPSSLQQLALGDEYGRGTGFNQPIHLVSWPASLLHVRS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008615FNIP
IPR032675LRR_dom_sf