mRNA_Ecto-sp13_S_contig18624.5839.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18624.5839.1
Unique NamemRNA_Ecto-sp13_S_contig18624.5839.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18624.5839.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18624contigEcto-sp13_S_contig18624:1423..2753 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1208
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionFNIP
Ec32 orthologEc-25_002320.1
Cds size1041
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462955.3761888-UTR-Ecto-sp13_S_contig18624:1422..15681681462955.3761888-UTR-Ecto-sp13_S_contig18624:1422..1568Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18624 1423..1568 +
1681462955.387442-UTR-Ecto-sp13_S_contig18624:1691..17121681462955.387442-UTR-Ecto-sp13_S_contig18624:1691..1712Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18624 1692..1712 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462955.3969688-CDS-Ecto-sp13_S_contig18624:1712..27531681462955.3969688-CDS-Ecto-sp13_S_contig18624:1712..2753Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18624 1713..2753 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18624.5839.1prot_Ecto-sp13_S_contig18624.5839.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18624 1713..2753 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18624.5839.1

>prot_Ecto-sp13_S_contig18624.5839.1 ID=prot_Ecto-sp13_S_contig18624.5839.1|Name=mRNA_Ecto-sp13_S_contig18624.5839.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=347bp
MAFGVQFNQPIDDVAWPASLQEFILSDSVCAAFDQRIDNVKWPSCLRRLI
LGWQVSHSLDDVSWPESLQQLTLSDCFDQSIQEVKWPPLLQQLTFGYQFN
TPIDFISWPPSLKELTFGCHFDCEVGLVQWPPSLEKITFGLKFNQKIEGI
LFPPFLLEALTGDPDFFKAIEWPNSLQEMTFGGEFNQPIERVAWPASLQR
LTFANFGGEFNHPIDNVSWPASLQDLNLGAKFNQPIHRVMWPLSLLKLAF
DTFGEFNQPIHQVEWPASLKDLTLGAEFNQSNHRVSWPASLQCLGFGDGF
NQPIDQVVWPSSLQQLALGDEYGRGTGFNQPIHLVSWPASLLHVRS*
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mRNA from alignment at Ecto-sp13_S_contig18624:1423..2753+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18624.5839.1 ID=mRNA_Ecto-sp13_S_contig18624.5839.1|Name=mRNA_Ecto-sp13_S_contig18624.5839.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1331bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18624:1423..2753+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACGAAGCAGTATGGCCCGATGGGATGAGGAGCCTCACTTTCGGACA
GATCGGTAATCAGCCGATTTCTAACCTGCCGTGGCCGGTGGCACTCCGAG
AGATCGTTTTCGGGAACCAGTTCGACCATCCGATCCACAAGGTGGAGTGA
CCGGTGTCCTTGCAGTGGATGGCGTTCGGCGAGCAGTTCAACCAGCCCAT
TGACGACGTCGCGTGGCCAGCATCACTGCAGGAGTTCATCTTGAGTGATT
TCCGATCCACAAGGTGGAGTGACCGGTGTCCTTGCAGTGGATGGCGTTCG
GCGTGCAGTTCAACCAGCCCATTGACGACGTCGCGTGGCCAGCATCACTG
CAGGAGTTCATCTTGAGTGATTCTGTCTGCGCGGCGTTTGACCAGCGTAT
CGACAACGTTAAGTGGCCATCGTGTCTGCGACGCCTGATCCTTGGGTGGC
AAGTTAGTCACTCACTCGACGACGTCTCGTGGCCGGAATCGCTTCAGCAG
CTCACCCTGAGCGACTGTTTCGACCAATCGATACAGGAGGTGAAGTGGCC
GCCATTGCTTCAGCAGCTGACCTTCGGTTACCAGTTCAACACGCCGATTG
ACTTTATTTCTTGGCCACCATCCCTAAAGGAGCTAACCTTTGGGTGCCAC
TTCGATTGCGAAGTCGGCCTGGTGCAATGGCCACCATCTTTGGAGAAGAT
CACTTTCGGCCTAAAATTCAACCAGAAAATAGAAGGGATCTTGTTCCCAC
CGTTCCTGCTCGAAGCACTCACCGGTGACCCAGACTTTTTCAAGGCGATC
GAGTGGCCAAACTCTCTCCAAGAAATGACATTCGGGGGCGAATTCAACCA
GCCAATTGAGAGGGTCGCATGGCCGGCGTCTCTGCAACGCTTGACCTTCG
CAAATTTTGGCGGGGAATTCAACCATCCAATCGATAACGTGTCATGGCCG
GCGTCATTGCAGGACCTGAATCTTGGCGCAAAATTCAATCAGCCGATTCA
CCGCGTGATGTGGCCTTTGTCGCTGCTGAAACTGGCCTTCGACACATTCG
GAGAATTCAACCAGCCCATCCATCAGGTCGAGTGGCCGGCGTCATTGAAG
GACCTAACTCTTGGTGCAGAATTCAATCAGTCGAATCACCGTGTCAGTTG
GCCGGCGTCGCTACAATGCCTGGGCTTCGGCGACGGATTCAATCAGCCGA
TTGATCAGGTCGTGTGGCCATCGTCACTGCAACAGCTGGCACTTGGGGAT
GAGTACGGTCGCGGTACTGGATTCAACCAGCCCATTCATCTGGTTTCGTG
GCCGGCCTCTCTGCTCCATGTAAGAAGTTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18624:1423..2753+

>mRNA_Ecto-sp13_S_contig18624.5839.1 ID=mRNA_Ecto-sp13_S_contig18624.5839.1|Name=mRNA_Ecto-sp13_S_contig18624.5839.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1041bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18624:1423..2753+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGTTCGGCGTGCAGTTCAACCAGCCCATTGACGACGTCGCGTGGCC
AGCATCACTGCAGGAGTTCATCTTGAGTGATTCTGTCTGCGCGGCGTTTG
ACCAGCGTATCGACAACGTTAAGTGGCCATCGTGTCTGCGACGCCTGATC
CTTGGGTGGCAAGTTAGTCACTCACTCGACGACGTCTCGTGGCCGGAATC
GCTTCAGCAGCTCACCCTGAGCGACTGTTTCGACCAATCGATACAGGAGG
TGAAGTGGCCGCCATTGCTTCAGCAGCTGACCTTCGGTTACCAGTTCAAC
ACGCCGATTGACTTTATTTCTTGGCCACCATCCCTAAAGGAGCTAACCTT
TGGGTGCCACTTCGATTGCGAAGTCGGCCTGGTGCAATGGCCACCATCTT
TGGAGAAGATCACTTTCGGCCTAAAATTCAACCAGAAAATAGAAGGGATC
TTGTTCCCACCGTTCCTGCTCGAAGCACTCACCGGTGACCCAGACTTTTT
CAAGGCGATCGAGTGGCCAAACTCTCTCCAAGAAATGACATTCGGGGGCG
AATTCAACCAGCCAATTGAGAGGGTCGCATGGCCGGCGTCTCTGCAACGC
TTGACCTTCGCAAATTTTGGCGGGGAATTCAACCATCCAATCGATAACGT
GTCATGGCCGGCGTCATTGCAGGACCTGAATCTTGGCGCAAAATTCAATC
AGCCGATTCACCGCGTGATGTGGCCTTTGTCGCTGCTGAAACTGGCCTTC
GACACATTCGGAGAATTCAACCAGCCCATCCATCAGGTCGAGTGGCCGGC
GTCATTGAAGGACCTAACTCTTGGTGCAGAATTCAATCAGTCGAATCACC
GTGTCAGTTGGCCGGCGTCGCTACAATGCCTGGGCTTCGGCGACGGATTC
AATCAGCCGATTGATCAGGTCGTGTGGCCATCGTCACTGCAACAGCTGGC
ACTTGGGGATGAGTACGGTCGCGGTACTGGATTCAACCAGCCCATTCATC
TGGTTTCGTGGCCGGCCTCTCTGCTCCATGTAAGAAGTTAG
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