mRNA_Ecto-sp13_S_contig1862.5836.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1862.5836.1
Unique NamemRNA_Ecto-sp13_S_contig1862.5836.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1862.5836.1 vs. uniprot
Match: A0A6H5L6U4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6U4_9PHAE)

HSP 1 Score: 882 bits (2280), Expect = 7.780e-314
Identity = 441/513 (85.96%), Postives = 462/513 (90.06%), Query Frame = 2 
Query:  260 GGRAMVVALLACLTSVVLAAPIYPRDPHLDWSEWDDPPASHLKDDPAKSTMDSSGRQHVDEAGVRRLVTTCALGLELSADVCGKGEVPDPQDAYRLHHMHSGRLPCGFEERLGMDAMEDIASKYSFHLIGDSTSRRLGESFVSIFTGRGSTHPVVQMDRNFSSGNLKVHFYWAPLCSGPEGVGAVLTTVMDAVLAAKDGKRAVIVTAYGVHDAFELKHAANGHGSPSYKSTLPQDIVESDGMRAAALGACRDATTQLVRAAAATAVPGTEAPPXXXXXXXXXXRRQLANVSTQVGPHETAEQQAAGIPLNNVRGGSVGAGNEDTPGASAPSAASGSIQPLLFLMQNNRYPPGSVENAFQEDLHRIQRQVVGEWEASEGSKGDGGKRGLFLVDDSVGLYGNLSCYRDANPIHFDEPVKLMEGKMLWDLLVLVDNGSVLHPTLLLANEDYDDSADGEGGGRFSMNPLSLSLSL--PLLVFLLIPLACFLFRYCRSGKTLAPECQNHGSSRNECYI 1792
            GGRA+VVALLACL SVV AA +YP DPHLDWSEWDDPPASHL +DPAKS MDS+GRQHVDEAGVRRLVTTCAL LELSADVCGKGEVPDPQDAYRLHHMHSG LPCGFEERLG +AMEDIASKYSFH IGDSTSRRLGESFVSIFTGRGSTHPVVQ D NFSSGNLKVHFYWAPLCSGPE VGA+LTTVMDAVLAAKDGKRAVI+TA+GVHDAFEL+HAANGHGSPSY+STLPQDIVE DGMRAAALGACRDATTQLVR AAATAVPGT APP          + QL NVSTQVG HET+++QAAGIP NNVRGGSVGAG ED   ASAP AASG +QPLLFLMQNNRYPPGSVENAFQEDLHRIQRQ VGEWEASEGSKGD G+RGLFLVDDSVGLYGNLSCYR ANPIHFDEPVKLMEGKMLWDLLVLVDNGSVL PTLLLANEDY DSADGEGGGRFS+NPLSLS     PLLVFLLIPLACFLFRYCR+ +TLA ECQ HG + +ECYI
Sbjct:    6 GGRAIVVALLACLASVVCAASVYPSDPHLDWSEWDDPPASHLNNDPAKSIMDSNGRQHVDEAGVRRLVTTCALRLELSADVCGKGEVPDPQDAYRLHHMHSGGLPCGFEERLGKEAMEDIASKYSFHFIGDSTSRRLGESFVSIFTGRGSTHPVVQRDINFSSGNLKVHFYWAPLCSGPESVGAMLTTVMDAVLAAKDGKRAVIITAFGVHDAFELQHAANGHGSPSYQSTLPQDIVEKDGMRAAALGACRDATTQLVRTAAATAVPGTAAPPVEEEQSPGDAQHQLPNVSTQVGRHETSQKQAAGIPPNNVRGGSVGAGKEDALDASAPPAASGPLQPLLFLMQNNRYPPGSVENAFQEDLHRIQRQAVGEWEASEGSKGDDGERGLFLVDDSVGLYGNLSCYRSANPIHFDEPVKLMEGKMLWDLLVLVDNGSVLPPTLLLANEDYGDSADGEGGGRFSINPLSLSXXXXXPLLVFLLIPLACFLFRYCRNRETLARECQKHGRNPSECYI 518
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BLAST of mRNA_Ecto-sp13_S_contig1862.5836.1 vs. uniprot
Match: D7G0V6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0V6_ECTSI)

HSP 1 Score: 772 bits (1994), Expect = 4.700e-271
Identity = 406/519 (78.23%), Postives = 426/519 (82.08%), Query Frame = 2 
Query:  245 MASNAGGRAMVVALLACLTSVVLAAPIYPRDPHLDWSEWDDPPASHLKDDPAKSTMDSSGRQHVDEAGVRRLVTTCALGLELSADVCGKGEVPDPQDAYRLHHMHSGRLPCGFEERLGMDAMEDIASKYSFHLIGDSTSRRLGESFVSIFTGRGSTHPVVQMDRNFSSGNLKVHFYWAPLCSGPEGVGAVLTTVMDAVLAAKDGKRAVIVTAYGVHDAFELKHAANGHGSPSYKSTLPQDIVESDGMRAAALGACRDATTQLVRAAAATAVPGTEAPPXXXXXXXXXXRRQLANVST--QVGPHETAEQQAAGIPLNNVRGGSVGAGNEDTP-GASAPSAASGSIQPLLFLMQNNRYPPGSVENAFQEDLHRIQRQVVGEWEASEGSKGDGGKRGLFLVDDSVGLYGNLSCYRDANPIHFDEPVKLMEGKMLWDLLVLVDNGSVLHPTLLLANEDYDDSADGEGGGRFSMNPLSLSLSLPLLVFLLIPLACFLFRYCRSGKTLAPECQNHGSSRNECYI 1792
            M SN GGRAMVVALLACL SVVLAAP+YPRDPHLDWSEWD PPASHLKDDPAKSTMD  GRQHVD+AGVRRL                                H    PC  +ERLG DAME IASKYSFHLIGDSTSRRLGESFVSIFTGRGS H + Q DR+FSSGNLKVHFYWAPLCSGPE VGA+L +VMDAV AAKDGKRAVI+TAYGVHDAFEL HAANGHGSPSYKS LPQD+VE DGMRAAALGACRD TTQLVRAAAATAVPGTEAPP          RRQL NVST  +VGPHET+E+QAAGIP +NVRGGSVGAGNEDT  GASAP AASG +QPLLFLMQNNRYPPGSVENAFQEDLH IQRQVVGEWEASEGSKGDGG+RGLFLVD+SVGLYGNLSCYR+ANPIHFDEPVKLMEGKMLWDLLVLVDNGSVL PT+ LA+EDY  SADGEGG  FSMN  SLSLSLPL VFLLI L CFLFRYCR+  TLAPECQ HG S NEC I
Sbjct:    1 MTSNPGGRAMVVALLACLASVVLAAPVYPRDPHLDWSEWDAPPASHLKDDPAKSTMDGGGRQHVDDAGVRRL--------------------------------HPAG-PCVSQERLGKDAMEYIASKYSFHLIGDSTSRRLGESFVSIFTGRGSIHRIAQRDRDFSSGNLKVHFYWAPLCSGPESVGAMLASVMDAVRAAKDGKRAVIITAYGVHDAFELHHAANGHGSPSYKSALPQDVVEKDGMRAAALGACRDTTTQLVRAAAATAVPGTEAPPVEEEQSPGDGRRQLPNVSTKVEVGPHETSEKQAAGIPPHNVRGGSVGAGNEDTLLGASAPPAASGPLQPLLFLMQNNRYPPGSVENAFQEDLHIIQRQVVGEWEASEGSKGDGGERGLFLVDNSVGLYGNLSCYRNANPIHFDEPVKLMEGKMLWDLLVLVDNGSVLPPTVFLADEDYGHSADGEGGDSFSMN--SLSLSLPLSVFLLISLGCFLFRYCRNRGTLAPECQKHGRSPNECDI 484
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BLAST of mRNA_Ecto-sp13_S_contig1862.5836.1 vs. uniprot
Match: D7G0T6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0T6_ECTSI)

HSP 1 Score: 371 bits (952), Expect = 1.490e-115
Identity = 212/439 (48.29%), Postives = 264/439 (60.14%), Query Frame = 2 
Query:  287 LACLTSVVLAAPIYPRDPHLDWSEWDDPPASHLKDDPAKSTMD------------SSGRQHVDEAGVRRLVTTCALGLELSADVCGKGEVPDPQDAYRLHHMHSGRLPCGFEERLGMDAMEDIASKYSFHLIGDSTSRRLGESFVSIFTGRGSTHPVVQMDRNFSSGNLKVHFYWAPLCSGPEGVGAVLTTVMDAVLAAKDG-KRAVIVTAYGVHDAFELKHAANGHGSPSYKSTLPQDIVESDGMRAAALGACRDATTQLVRAAAATAVPGTEAPPXXXXXXXXXXRRQLANVSTQVGPHETAEQQAAGIPLNNVRGGSVGAGNEDTPGASAPSAASGSIQPLLFLMQNNRYPPGSVENAFQEDLHRIQRQVVGEWEASEGSKGDGGKRGLFLVDDSVGLYGNLSCYRDANPIHFDEPVKLMEGKMLWDLLVLVDNGS 1564
            L C  S V A    P    LDWSEW DPP + + D+ A S+M+            + G   +  A VR LV  CA  L+++ D+CG  E P  +D YRL HM SG LPCGFEER   + +ED+ASK++FH IGDST RRLGESFVSIFTG+GS H +V  D +FS+GNL+  FYWAP C G E VGA L TVMD V  AK G KR VI+TA+GVHD++EL     G  S SY   LP D V++  +R A LGAC+  T QLV+AAAA  +                     A+ + + G    A   +   P    R  +   G   + GA   +AA+    PL+FLMQNNRYPP S E+ + E+L RIQR  V EWEA EG++   G  G++LVDDSV L+ NLSCYR+ NPIHF EPVKL+EGKMLWDLL LV+  S
Sbjct:   18 LVCFPSAVPAESTQPDHLTLDWSEWIDPPVAPVTDNWATSSMEELLTTPCVDAAQTGGCHQLRPAQVRTLVHDCARRLKVAGDLCGHSETPVVEDDYRLPHMESGVLPCGFEERTPNEVLEDMASKFTFHFIGDSTIRRLGESFVSIFTGQGSKHDMVHSDLDFSTGNLETRFYWAPFCFGSESVGAKLATVMDGVKTAKRGDKRTVIITAFGVHDSYELPLLVKGSASTSYMDALPPDFVDNGSVRTATLGACQATTAQLVQAAAAKVM-------------------AWADPTAEKGQWSKAVHAS---PNTTTRSTTETNGVSFSFGAPGTTAATDPTPPLVFLMQNNRYPPNSPEDNYLEELRRIQRGEVQEWEAGEGNEDAEG--GIYLVDDSVSLFRNLSCYRERNPIHFHEPVKLVEGKMLWDLLALVERES 432
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BLAST of mRNA_Ecto-sp13_S_contig1862.5836.1 vs. uniprot
Match: A0A6H5JGU9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU9_9PHAE)

HSP 1 Score: 199 bits (507), Expect = 1.790e-50
Identity = 154/419 (36.75%), Postives = 198/419 (47.26%), Query Frame = 2 
Query:  446 GVRRLVTTCALGLELSADVCGKGEVPDPQDAYRLHHMHSGRLPCGFEERLGMDAMEDIASKYSFHLIGDSTSRRLGESFVSIFTGRGSTHPVVQMDRNFSSGNLKVHFYWAPLCSGPEGVGAVLTTVMDAVLAA------KDG-----------KRAVIVTAYGVHDAFELKHAANGHG-SPSYKSTLPQDIVESDGMRAAALGACRDATTQLVRAAAATAVPGTEAPPXXXXXXXXXXRRQLANVSTQVGPHET---AEQQAAGIPLNNVRGGSVGAGNEDTPGASAPSAASGS---------------------------IQPLLFLMQNNRYPPGSVENAFQEDLHRIQRQVVGEWEASEGSKGDGGKRG-----LFLVDDSVGLYGNLSCYRDANPIHFDEPVKLMEGKMLWDLL 1543
            GV RLV+ CA  L L    C +   P  QD YR+  M SG   CGFE  +  + + D+A KY F  IGDST+RRL ESFVSI +GR STHPVV    + S G+LKV F WAP CS   G+ A +   +    +        DG           +R VI TA+GVHDA EL+ A      +  Y   LPQ+ V + G  AAAL  CRDAT +LV  AAA          XX           L+  + + G  +    A+ +  GI    +RGG          G S+  A   S                              L+FL+QNN + P S  + F + LHRIQ QV+ E  A +G +            +FL+ D   LY ++SCYR    IHF EPVKL+EGKMLW L+
Sbjct:  228 GVHRLVSDCARQLMLPGFSCDE---PVLQDQYRVPLMESGNASCGFETLMPDEKLLDLALKYEFLFIGDSTTRRLAESFVSIVSGRASTHPVVHHRIDMSRGDLKVTFLWAPCCSVDGGISAAVRDALGFRSSTYGSGNNNDGXXXXXXENGSPRRTVIFTAFGVHDATELRKAERDPELNQWYPMGLPQEAVAAQGPTAAALETCRDATRELVEVAAAXXXXXXXXX-XXDGGGDVGNNPSLSEATGEGGEGQVVVNADGRRDGIADKKLRGGG---------GVSSEVAVHESDGHXXXXXXXXXXXXXXXXXXXXXXXXXXXLVFLLQNNPFNPRSELDYFLQQLHRIQEQVIDEAAAKQGCEXXXXXXXXXXXRVFLLRDRDSLYSSMSCYRIDGSIHFHEPVKLVEGKMLWHLV 633
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BLAST of mRNA_Ecto-sp13_S_contig1862.5836.1 vs. uniprot
Match: D7FUL3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL3_ECTSI)

HSP 1 Score: 196 bits (497), Expect = 3.460e-49
Identity = 163/433 (37.64%), Postives = 203/433 (46.88%), Query Frame = 2 
Query:  446 GVRRLVTTCALGLELSADVCGKGEVPDPQDAYRLHHMHSGRLPCGFEERLGMDAMEDIASKYSFHLIGDSTSRRLGESFVSIFTGRGSTHPVVQMDRNFSSGNLKVHFYWAPLCSGPEGVGAVLTTVMDAVLAAK------DG------------KRAVIVTAYGVHDAFELKHAANGHG-SPSYKSTLPQDIVESDGMRAAALGACRDATTQLVRAAAATAVPGTEAPPXXXXXXXXXXRRQLANVSTQVGPHETAEQQAA--------GIPLNNVRGG-------------SVGAGNEDTPGASAPSAASGSIQPL-----------LFLMQNNRYPPGSVENAFQEDLHRIQRQVVGEWEASEGSKGDGGKRG----------------LFLVDDSVGLYGNLSCYRDANPIHFDEPVKLMEGKMLWDLL 1543
            GV RLV+ CA  L L    C +   P   D YR+  M SG   CGFE R+  + + D+ASKY F  IGDST+RRL ESFVSI +GR STHPVV    + S G+LKV F WAP CS   GV A +   +    +        DG            +R VI TA+GVHDA EL+ A      +  Y   LPQ  V +DG  AAAL  CRDAT +LV  AA           XXXXXXXXXX     + S           Q A        GI    +RGG              V     D  G++                       +FL+QNN + PGS  + F + LHRIQ QV+ E  A + +   G ++                 +FL+ D   LY ++SCYR    IHF EPVKL+EGKMLW L+
Sbjct:  200 GVHRLVSDCARQLVLPGFGCDE---PVLADQYRVPLMESGDASCGFETRMPDEKLLDLASKYEFLFIGDSTTRRLAESFVSIVSGRASTHPVVHHRIDMSRGDLKVTFLWAPCCSVGGGVSAAVRDALGFRSSTYGSDNNYDGDDXXXXXXXXSPRRTVIFTAFGVHDATELRKAERDPELNQWYPMGLPQAAVATDGPTAAALQTCRDATRELVEVAAXXXXXXXXXXXXXXXXXXXXXXXXXKDPSLSEAXXXXXXXQVAVNADGRRDGIADKKLRGGXXXXXXXXXXXXXEVAVHESDGHGSNXXXXXXXXXXXXXXXXXXXXXXXVFLLQNNPFNPGSEHDYFLQQLHRIQEQVIDEAAAEQAAAKQGCEQHQDCEQXXXXXXXXXXRVFLLRDRDSLYSSMSCYRIDRSIHFHEPVKLVEGKMLWHLV 629
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BLAST of mRNA_Ecto-sp13_S_contig1862.5836.1 vs. uniprot
Match: D7FZD7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZD7_ECTSI)

HSP 1 Score: 187 bits (476), Expect = 3.810e-49
Identity = 145/414 (35.02%), Postives = 189/414 (45.65%), Query Frame = 2 
Query:  332 RDPHLDWSEWDDPPASHLKDDPAKSTMD-----SSGRQHVDEAGVRRLVTTCALGLELSADVCGKGEVPDPQDAYRLHHMHSGRLPCGFEERLGMDAMEDIASKYSFHLIGDSTSRRLGESFVSIFTGRGSTHPVVQMDRNFSSGNLKVHFYWAPLCSGPEGVGAVLTTVMDAVLAAKDGKRAVIVTAYGVHDAFELKHAANGHGSPSYKSTLPQDIVESDGMRAAALGACRDATTQLVRAAAATAVPGTEAPPXXXXXXXXXXRRQLANVSTQVGPHETAEQQAAGIPLNNVRGGSVGAGNEDTPGASAPSAASGSIQPLLFLMQNNRYPPGSVENAFQEDLHRIQRQVV--GEWEASEGSKGDGGKRGLFLVDDSVGLYGNLSCYRDANPIHFDEPVKLMEGKMLWDLLVLV 1552
             D  + W  WD+   S      + S +D     S G ++    G+  LV  CA  L+L    C K         +R+  M SG LPCGFE RL     ED+AS+Y+ H +GDSTSRRL ESF+SI TG  S H      RN +   L+V+F+WAP C   +     L  +MD   A   G+RA+IVTA+GV D+         HG                G   AALG C DA   LV+ A        + PP                 ST      TAE  AA  PL                               +FL+QNN + PGS ++ F  DLH+IQR++V  GE EA            ++LV D   ++  LSCYR +  IHF++PVKL+EGKMLWDL+ LV
Sbjct:   23 NDQRVSWDGWDEQSQSPDPTTNSPSVVDLDVDSSHGSEY--RGGLHDLVRQCAERLDLPGYTCEKNS---SSADFRIPLMGSGDLPCGFETRLPTSTFEDLASRYAIHFMGDSTSRRLVESFISIATGNRSAHVYYHESRNLTVDGLQVNFHWAPYCRQVKNES--LHEIMDNQ-ALDGGRRAIIVTAFGVWDS--------SHG----------------GGDEAALGVCADAVRSLVQVA--------QPPPAG---------------ST------TAENIAASPPL-------------------------------VFLLQNNPFLPGSEQDLFLRDLHQIQREIVDSGEQEA------------VYLVHDRESIFNRLSCYRMSESIHFNDPVKLVEGKMLWDLIELV 332
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BLAST of mRNA_Ecto-sp13_S_contig1862.5836.1 vs. uniprot
Match: A0A6H5JFC3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFC3_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 1.130e-32
Identity = 101/283 (35.69%), Postives = 139/283 (49.12%), Query Frame = 2 
Query:  599 MDAMEDIASKYSFHLIGDSTSRRLGESFVSIFTGRGSTHPVVQMDRNFSSGNLKVHFYWAPLCSGPEG-VGAVLTTVMDAVLAAKDGKRAVIVTAYGVHDAFELKHAANGHGSPSYKSTLPQDIVESDGMRAAALGACRDATTQLVRAAAATAVPGTEAPPXXXXXXXXXXRRQLANVSTQVGP-HETAEQQAAGIP-LNNVRGGSVGAGNEDTPGASAPSAASGSIQPLLFLMQNNRYPPGSVENAFQEDLHRIQRQVVGEWEASEGSKGDGGKRGLFLVDD 1438
            +  +ED++S+Y FH +GDST+RRL ESFVSI TG+ S H VV    + SSG+LKV F+WAP+C      + A +  ++ A L   D  RA+I+TA+GVH+A  L +       P Y +    D    +   AAAL  C + T+QLV  A  TA                  R   AN      P H   +    G P     RG   G G+         S     + PL+FL+QNN Y PGS E+ F E LH +Q +VV +        G+    G+F++DD
Sbjct:   76 LGTLEDLSSRYVFHFVGDSTTRRLAESFVSILTGQASPHFVVHERIDMSSGSLKVIFHWAPMCIDARSKIQASIDEIVAAQLRNGDA-RAIIITAFGVHNAHRL-YGDQAGTLPRYTAPSSHDTFREEDAEAAALNVCEEVTSQLVHVANLTA-----------------GRSASANQEKLYSPGHRGLDVADEGDPKFGRPRGTWTGGGDVSL------SIDDEGLPPLVFLLQNNHYFPGSEEDRFLEHLHDVQDRVVRQGAKDIARHGE--NAGVFVLDD 331
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1862.5836.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5L6U4_9PHAE7.780e-31485.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0V6_ECTSI4.700e-27178.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0T6_ECTSI1.490e-11548.29Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JGU9_9PHAE1.790e-5036.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUL3_ECTSI3.460e-4937.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FZD7_ECTSI3.810e-4935.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JFC3_9PHAE1.130e-3235.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1862contigEcto-sp13_S_contig1862:2460..9009 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2924
Hectar predicted targeting categorysignal peptide
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-23_002150.1
Cds size1551
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462955.1891582-UTR-Ecto-sp13_S_contig1862:2459..35881681462955.1891582-UTR-Ecto-sp13_S_contig1862:2459..3588Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1862 2460..3588 -
1681462955.2515042-UTR-Ecto-sp13_S_contig1862:8765..90091681462955.2515042-UTR-Ecto-sp13_S_contig1862:8765..9009Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1862 8766..9009 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462955.2140336-CDS-Ecto-sp13_S_contig1862:3588..46231681462955.2140336-CDS-Ecto-sp13_S_contig1862:3588..4623Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1862 3589..4623 -
1681462955.233575-CDS-Ecto-sp13_S_contig1862:5363..55371681462955.233575-CDS-Ecto-sp13_S_contig1862:5363..5537Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1862 5364..5537 -
1681462955.2422981-CDS-Ecto-sp13_S_contig1862:8423..87651681462955.2422981-CDS-Ecto-sp13_S_contig1862:8423..8765Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1862 8424..8765 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1862.5836.1prot_Ecto-sp13_S_contig1862.5836.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1862 3589..8765 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1862.5836.1

>prot_Ecto-sp13_S_contig1862.5836.1 ID=prot_Ecto-sp13_S_contig1862.5836.1|Name=mRNA_Ecto-sp13_S_contig1862.5836.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=517bp
MASNAGGRAMVVALLACLTSVVLAAPIYPRDPHLDWSEWDDPPASHLKDD
PAKSTMDSSGRQHVDEAGVRRLVTTCALGLELSADVCGKGEVPDPQDAYR
LHHMHSGRLPCGFEERLGMDAMEDIASKYSFHLIGDSTSRRLGESFVSIF
TGRGSTHPVVQMDRNFSSGNLKVHFYWAPLCSGPEGVGAVLTTVMDAVLA
AKDGKRAVIVTAYGVHDAFELKHAANGHGSPSYKSTLPQDIVESDGMRAA
ALGACRDATTQLVRAAAATAVPGTEAPPVEEEQSSGGGRRQLANVSTQVG
PHETAEQQAAGIPLNNVRGGSVGAGNEDTPGASAPSAASGSIQPLLFLMQ
NNRYPPGSVENAFQEDLHRIQRQVVGEWEASEGSKGDGGKRGLFLVDDSV
GLYGNLSCYRDANPIHFDEPVKLMEGKMLWDLLVLVDNGSVLHPTLLLAN
EDYDDSADGEGGGRFSMNPLSLSLSLPLLVFLLIPLACFLFRYCRSGKTL
APECQNHGSSRNECYI*
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mRNA from alignment at Ecto-sp13_S_contig1862:2460..9009-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1862.5836.1 ID=mRNA_Ecto-sp13_S_contig1862.5836.1|Name=mRNA_Ecto-sp13_S_contig1862.5836.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6550bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1862:2460..9009- (Ectocarpus species13 EcNAP12_S_4_19m)
CGCGTACTTAGCCCAGCCACAGCAGCAACCCCCCTCGCAATCAATCACGA
TTTTGATGTCCGGTCAGCGGCGGTAGGTAAGCATTAAGTCTGCTTCGCCC
TCCCTCACCTCTCTCTTCAACATCCCTCGCACAACGTAGCTGGTTGGGAG
AAGCACTACCATAAGGCAGCGCGTACACGAGACGCGGTGGCAGCAAGCAG
CTTTTTGGCGGATTAGCAGTTCGTTAAGGAGACAGCGGAGAGACATGGCC
AGTAACGCCGGCGGTCGGGCCATGGTTGTAGCATTGCTGGCGTGCCTTAC
TAGTGTGGTGCTCGCCGCCCCGATATACCCTCGCGACCCGCACCTGGACT
GGAGCGAGTGGGACGACCCGCCAGCGTCTCACCTGAAAGACGACCCCGCC
AAGAGCACCATGGACAGCAGCGGTCGCCAGCATGTAGACGAGGCCGGCGT
GCGGCGGCTGGTGACGACGTGTGCCCTTGGGTTAGAGCTATCAGCTGATG
TGTGCGGGAAAGGGGAGGTTCCCGACCCGCAAGATGCCTATCGGTTGCAC
CACATGCACTCGGGGCGCCTCCCGTGCGGGTTCGAGGTATGTTCGCTCTC
CTCTCTGTCTTCCTTCTGGTATTGTTTCGGGATTGGCGCGCAAGGTTGAC
AATGATGTGGGACACGTGTGTTGGGGCAATTTTTTTTTTTAAAACACAAC
CTAGCTAAGCTGTAGAAGAGCTGCGGTGGGCAGCAATGAAATTGTTTGCC
GGGTGTAGAAAACTCGTCAATGTCTGGATCAAACCAAATCGGCTTGTCAC
TCCTGTACTCTTCGCATCACAACTGGTGTGAGGTACAGTTGCGGCCCGCC
GTTAAGAATAATCTATTTAAGAAAACCCTCAACTTGTAAGGAAAAATATG
AAAAAGTGACTACTATATAATACAAGCCATACCTCAAAACCGACGCAAAG
ATACAGGAACATCCGAACAAGAAAACACGCACCCACAGAGGCACGAGATA
TGCTGTGTAAGAAACTACAGTAGGGGACCGGAGCTCATGGGAAACAGCTT
GAGTTTCTCTGTGCGTTTCTTCCGAACAACGCATTGTTTCGATTGTTGCA
AAGGGGGCGGGCGGCACACCTCAGCACCTTGACAGCACCAGTTAGACTAG
ACCCCCGGAAGCGGTCTGTCCATTGAGTTTCTGTGTTTCGCACTCATCGG
TTGGGAGACGTTCGTGTACGGCGGATATGGTTGTCGAAATAATGGGTAAC
ATAAGAAAAGGACAACTAACTGAGTGACGTATGTAAACAAGGCGACAGAT
CCAAACAATAAGTGAGTGTCGTTTAAAGAATAATCATAAGTATTCGACCA
ACAGCCACTTTGAGCCTCGACCCGAAATTGACGTTTCTTATTCGCGGGCC
CCAACTGTATGATACTCTGCACACCGCAATGCCGAGATTAGGTCTTTGAG
AGCAACTCCATCAGTGTAAGAGGTACAGTAGATTGGGACCTACCTCATTT
TTCGGGCGGCATGCCCTTTTTTTTTTTTTCATGATGGGACATGTCAGACA
GCAGCAAAGTAGAGCCTTCGACAGCAACACTCTCCCAGAAACAGATCTGA
GCGTGCCACCGCAGATGGGCGGGAACTCAACCCCTTCTGGCGCTGGCTCA
ATAGAACAAAACCTTTCCCGCCATTTTTACCTTAGTGCTGCTGTTCTCGG
TACAGGACACCATGAGGAAGCGTCGTGTGCGCTGGCACGTTCAGGTTTTT
GTTTGCTTCTTGGGTTGTGATATCGAGGATCGTACAACAGCGTTGTGGTG
GCCTACAATCTCCGCAAATCTCGGCAAATTTGACCAACACCCAGTGTCTT
GTACTGCTTGTGCTCACCGCCACGGACCGTAGACTGCTAAACGGCGGGTC
GTCAGCAGTAACTACGTAGTGACATCAGGTCAACCCGCAGTTCAGGAGAT
TGGGGTCAGGGTTTCCGAAGTCAGTCAAAATCAGCTCGACCGCCCCCCTA
AAATAGGCGTGGTAAAGCGGTTCATTGCGTTCGCAGGGACATCCAGCCTT
TCTTGCCCGAACTTGTGCAGAATCCGAATTACTTCTAGAAGTATTTTTTA
CCTTACCCTTGTGCGATAACACCCCGACGCGCGCGAATCCGCCCATGTTT
GCACTCGTATCCACTCTTGGAGTATAAGAGTGTACGCTACGCATATTTTC
TATTTTTTTTTGTGAAGTTGTGGAGTCTATTCCTTGAACCGCAGACATCG
CCTCTCACGCGTTTGCTCCAATACGGGTTGATATAGGGCCCTTAGATGCT
TTCACTGAAACACCAAACAGCAGTGCTCGAGTTCCGTGCAATTGAACCTT
AAAGCGAACATTTCGTATGATTGCCAAGTCGTGTCTTTTCGGGGTTGGCA
TGCCCTCCAAGACCCCCGTAGGCGCTGAATCTCTGTAGAGGCGCGGTAAA
CAGCTTGGTGCCACCTATTCCTATCCTCTTGATCGATAAAGGGATCGGGG
AAGAAGTTTAGGAACGATCCTCTGGTGAATTCCCCATCTAGGCGTTCATG
GCCTCCCAACCGGCCGAGTTTATTGATGTCCTACACTTTCGACAGTTTTG
CTACAACGAGCGCTCAAACCACCGCGTGTCGCTACGTGTTTTTTGTTGCC
TTCCATATTTCTGTTTATTTACTTCCCTGAACTTTTGAAGCCCTCCTCTG
ATGAAGAACCTTGCGCTTCAAAGCATTTTTTGGCCTAGCGGGTGGCGAAG
GGAGGGAGTCGGTCAACGGAACAAAGCCTGTCGCGTGATGTGCCTCGTCT
GTTTCGGGGCTGGTTACGAACAGTCTCGTCCATGCAAAAATTTTTCTACG
TACACGCCCAGCAACCAATCTATCCATCTGATGCAGCAATTGAGCGCCCG
ATTGACGTTGGATGCCGCGTATTTGACCACGAGTTACCGCCCCTGGGACG
CCCTCCCCTGACGGTTTTTTATCGCTTGGTCCAGTACCGCCTTTGCTTTG
AATTTTTCCTTTCTGGTGGCACACGCTGCCTGAATTGTCTTTGGTAAAAA
GAACAAAGCTCCCAAGTCACGGGCCCCGGCGATGTCCTGCTTTTCCCCAC
CACCAGGAACGCCTATCGTAAGGTTACACTATGGTCTTCTTTCTTCGGGT
CACCCTCCTCTCTTGAGTCAGGCCATCCGATCCCCAAATGCCGTGCGATA
TTCGGGAACAATGCGTTGACCGCGGGAAGTTGCGATCTTAATACTAGTAT
ACCCCGCCTCTTGTAGGCGCTCGTGGGAAGGTTTGACGCCCATTTGGAGA
TTATTTCTCAGAATCAGAATCGAAGTGTGGCAAGAGTCGGCATCCACAAT
TGCTGCTATTGTTGTTCACTTCTTGCGTTCTTGCTCGAATGTTGCCCCTG
GAAGACCTTATTCATCCTCTTGTGCGAATTCCATCCTCTTTGCGCTTGTT
GGCTGGATCTTGTGTGTCGCAGGAGCGCTTAGGGATGGACGCTATGGAGG
ATATTGCCTCCAAGTATTCGTTCCACTTGATAGGCGACAGCACCAGCCGA
AGACTCGGGGAGAGTTTTGTGTCGATTTTCACGGGGCGAGGATCGACCCA
CCCAGTCGTCCAGATGGACAGAAACTTTTCTTCAGGGAACCTTAAGGTGA
GAATTAGCACCCCTTAGTAGAACGATAACATGTTCACAGCTATCCCGGCA
CTCGATTGCCGCTATCAACATGAGGGGGTTTGATGGTGTCGCCAAGAGAT
TGACCCCTCAAACTGGTCCTGTGTGTTTCCTCAAACTGGTTCTGTGTGTT
TCCTTGAAGACCTCACTCCACGGTCTGAATCCCGAGTTACAGTGATGTAG
GTTGTTGGACCTAGACGCAAGCCTGTTGCACTGCGGGAGGCAACCCACTC
CTTCTTGACACATTTCCTCGGGGGAGAAAATCGTTGTAGTGTCGCATTAC
GGCGAAGGTAGGGACGGCAGACAACACCCCTTGCGTGACACCAGTCCAAG
TTCTTGCGCAGAGTCCGTACGGTCGTGGGTGACGCCCCGCGGGTGATAGC
CATGTGCACGGGCAGACGAAAAATGGAGGGAGATCGTGACGATTTTTTTT
TTTCTTGGGAATGGTCTGGAGTGCTTGACCATTTTCTCGTATCGACAGAA
TTCAAGTTCGGGGCACCTCATTCGTCAAGTAGTTCATCGCCGAGCTGTAG
CACGCCTCCGTCTCCCGTGCACTCTTCGATGCAAGGTTTACCACTTGACT
TTTCGGGTCATTACATTTTGTAGGTGGAACCTTCGGGGGGCTTTGAGGCG
AGGAAAAACGTTGTCAGCAAGGATTGAGCCATAATCGTGAAAAATCAGCT
TATCCGTGAAACTCCCCCCCACTCCCAAACGCGAAGGTACACTTCTACTG
GGCACCTTTGTGCTCGGGGCCCGAGGGCGTCGGCGCGGTGCTAACAACCG
TCATGGACGCGGTCCTCGCTGCGAAAGACGGCAAGCGCGCGGTGATCGTC
ACCGCGTACGGCGTCCACGACGCGTTTGAGCTGAAGCATGCCGCCAACGG
GCATGGGAGCCCCTCGTACAAGAGCACCCTTCCTCAAGATATCGTTGAGT
CGGACGGCATGAGGGCCGCCGCGCTTGGCGCTTGCCGGGACGCTACCACT
CAGCTGGTCAGAGCGGCGGCAGCAACGGCGGTACCCGGGACTGAAGCGCC
ACCAGTGGAGGAAGAGCAATCGTCGGGGGGTGGGCGGCGCCAGCTGGCGA
ACGTGTCAACGCAGGTTGGGCCACACGAGACCGCAGAGCAACAGGCGGCA
GGCATCCCACTAAACAATGTCAGAGGTGGTTCGGTTGGGGCTGGAAATGA
AGACACGCCGGGCGCGTCGGCCCCGTCGGCCGCATCAGGCTCTATACAGC
CGCTGCTCTTTCTTATGCAGAACAACAGATATCCCCCCGGCTCTGTGGAG
AATGCGTTTCAGGAAGACCTGCATAGAATACAGAGGCAGGTCGTTGGCGA
GTGGGAAGCAAGCGAAGGGTCTAAGGGCGATGGCGGTAAACGAGGATTGT
TTCTCGTGGACGACAGCGTCGGCTTGTATGGGAACTTGTCCTGTTACCGC
GATGCCAACCCAATCCACTTCGATGAGCCCGTGAAGCTTATGGAAGGGAA
GATGCTTTGGGATTTGCTGGTGCTCGTCGACAACGGGAGCGTGTTGCACC
CCACCCTTCTTTTGGCGAACGAAGACTACGACGATAGTGCTGATGGTGAG
GGTGGCGGTAGGTTCTCGATGAATCCGTTGTCGCTGTCGCTGTCGTTGCC
GTTGTTGGTGTTCTTGTTGATACCTCTTGCCTGTTTCTTGTTTCGATATT
GCCGCAGTGGAAAAACGCTGGCACCAGAGTGCCAGAATCACGGCAGCAGT
CGAAATGAATGTTACATTTAAGGTGCCCTGACCGTGTGGCTGGCGTGCTA
CGGTGATGTAGGTTGTTCGAACGTCAATTTTTTGCGGTGGGATGTCACCC
GCCCTTGGAGAGGCGTAGAGAATTTGACGTGTGTGATATGTGCTGCTTGT
GCTTGTTTTGCGGGGGGACTGCTCCGCAACGGTAGAGCCGGTCGAATAAA
GTATTGCCGAATGTAGATTGTCGCTGTCTCGTGTATCCGTTGTGCCCGTT
AGTTTTTGCGCGACGTGTGCAATTCACGGGTCTTAGTACGTAGAATCTGC
TTCCTCCTTTGTAGTGCGTAGACTTCCCTATCGTGCTCGGTTATGTTTTT
GTACGTTTGTTTCACGTAGACTCACGCGTGGCCTTATGTAGGCCTCACAC
GGAGGTGGTGTTGTTCCTGTTTCCGCGTACACCTCTACCTCATGTTCGGA
GTGTTGTGCATCTGCCGAAACCGTTTCTTTTCGCGGCCGATATTGGTATT
TGCAAGACAAGCAATCTGTCTTCTCGAGAAGTCGGCGCTTTTGGCGTGCG
CCCACACCCTTTGCAGCGTCGTGCGCCATATGTGGGCATATTATTAGGCG
CTTTGTCCATTGTTCCAGCAGCGGTGAGTTTGTATTACTGTGTGGTTGAG
TGAATCGATTGTTGCTGTAGTGGTTGAGTGAGTTGACGTCGCTCATTCCT
CCGACGCATCAATTCTTGAAGATGGGCTCATCGTTGTGTGCTTGCTCCCC
TCGTGATATCCCCCATCTGGAAGGCAGATGTATTGTAGGGTGCGAATGTT
GCCCAAGGCGGGTGGTGCGCGTACGTGTTCCGTCGTGCGTTGACAGCAAC
GATATGGTCCAAACCTTTTGTTTTTTTCACAAGCACCGACAGTATCTTTG
CGTTCTATGCGTTCGCCGTCCGTTGACTGCACGTGTTGCCAACAAAGTGT
TTTCGTTTGTGGCCTCGCGCGGCCAAATGCATATTTGTAGCAGTGTAGAG
GGTTGTTCAACGCAAAGGCACCAGACAGGGTTTGACTGACAGTTAACTGT
TTGACCATCGATTTTGCGCAGAACGCTACAAGTACTGTTGAAGCAGTGGC
TCTGGAGGGCTTCACTCTCCTCGTCTCACCCTTGTCAACGGATTTTGAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1862:2460..9009-

>mRNA_Ecto-sp13_S_contig1862.5836.1 ID=mRNA_Ecto-sp13_S_contig1862.5836.1|Name=mRNA_Ecto-sp13_S_contig1862.5836.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1551bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1862:2460..9009- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCAGTAACGCCGGCGGTCGGGCCATGGTTGTAGCATTGCTGGCGTG
CCTTACTAGTGTGGTGCTCGCCGCCCCGATATACCCTCGCGACCCGCACC
TGGACTGGAGCGAGTGGGACGACCCGCCAGCGTCTCACCTGAAAGACGAC
CCCGCCAAGAGCACCATGGACAGCAGCGGTCGCCAGCATGTAGACGAGGC
CGGCGTGCGGCGGCTGGTGACGACGTGTGCCCTTGGGTTAGAGCTATCAG
CTGATGTGTGCGGGAAAGGGGAGGTTCCCGACCCGCAAGATGCCTATCGG
TTGCACCACATGCACTCGGGGCGCCTCCCGTGCGGGTTCGAGGAGCGCTT
AGGGATGGACGCTATGGAGGATATTGCCTCCAAGTATTCGTTCCACTTGA
TAGGCGACAGCACCAGCCGAAGACTCGGGGAGAGTTTTGTGTCGATTTTC
ACGGGGCGAGGATCGACCCACCCAGTCGTCCAGATGGACAGAAACTTTTC
TTCAGGGAACCTTAAGGTACACTTCTACTGGGCACCTTTGTGCTCGGGGC
CCGAGGGCGTCGGCGCGGTGCTAACAACCGTCATGGACGCGGTCCTCGCT
GCGAAAGACGGCAAGCGCGCGGTGATCGTCACCGCGTACGGCGTCCACGA
CGCGTTTGAGCTGAAGCATGCCGCCAACGGGCATGGGAGCCCCTCGTACA
AGAGCACCCTTCCTCAAGATATCGTTGAGTCGGACGGCATGAGGGCCGCC
GCGCTTGGCGCTTGCCGGGACGCTACCACTCAGCTGGTCAGAGCGGCGGC
AGCAACGGCGGTACCCGGGACTGAAGCGCCACCAGTGGAGGAAGAGCAAT
CGTCGGGGGGTGGGCGGCGCCAGCTGGCGAACGTGTCAACGCAGGTTGGG
CCACACGAGACCGCAGAGCAACAGGCGGCAGGCATCCCACTAAACAATGT
CAGAGGTGGTTCGGTTGGGGCTGGAAATGAAGACACGCCGGGCGCGTCGG
CCCCGTCGGCCGCATCAGGCTCTATACAGCCGCTGCTCTTTCTTATGCAG
AACAACAGATATCCCCCCGGCTCTGTGGAGAATGCGTTTCAGGAAGACCT
GCATAGAATACAGAGGCAGGTCGTTGGCGAGTGGGAAGCAAGCGAAGGGT
CTAAGGGCGATGGCGGTAAACGAGGATTGTTTCTCGTGGACGACAGCGTC
GGCTTGTATGGGAACTTGTCCTGTTACCGCGATGCCAACCCAATCCACTT
CGATGAGCCCGTGAAGCTTATGGAAGGGAAGATGCTTTGGGATTTGCTGG
TGCTCGTCGACAACGGGAGCGTGTTGCACCCCACCCTTCTTTTGGCGAAC
GAAGACTACGACGATAGTGCTGATGGTGAGGGTGGCGGTAGGTTCTCGAT
GAATCCGTTGTCGCTGTCGCTGTCGTTGCCGTTGTTGGTGTTCTTGTTGA
TACCTCTTGCCTGTTTCTTGTTTCGATATTGCCGCAGTGGAAAAACGCTG
GCACCAGAGTGCCAGAATCACGGCAGCAGTCGAAATGAATGTTACATTTA
A
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