prot_Ecto-sp13_S_contig18614.5835.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig18614.5835.1
Unique Nameprot_Ecto-sp13_S_contig18614.5835.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length72
Homology
BLAST of mRNA_Ecto-sp13_S_contig18614.5835.1 vs. uniprot
Match: A0A6H5KQ17_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ17_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 6.070e-40
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0
Query:    1 MPGRTAKQCRERYNNHVDPGIKKDKIWTAEEDALVMQLHAEHHNQFAKIARNIPGRCYDDVKNRRV 66
            MPGRTAKQCRERYNNHVDPGIKKDKIWTAEEDALVMQLHAEHHNQFAKIARNIPGRCYDDVKNRRV
Sbjct:  399 MPGRTAKQCRERYNNHVDPGIKKDKIWTAEEDALVMQLHAEHHNQFAKIARNIPGRCYDDVKNRRV 464          
BLAST of mRNA_Ecto-sp13_S_contig18614.5835.1 vs. uniprot
Match: D8LH85_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH85_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 7.470e-38
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0
Query:    1 MPGRTAKQCRERYNNHVDPGIKKDKIWTAEEDALVMQLHAEHHNQFAKIARNIPGRCYDDVKNR 64
            MPGRTAKQCRERYNNHVDPGIKKDKIWTAEEDALVMQLHAEHHNQFAKIARNIPGRCYDDVKNR
Sbjct:  528 MPGRTAKQCRERYNNHVDPGIKKDKIWTAEEDALVMQLHAEHHNQFAKIARNIPGRCYDDVKNR 591          
BLAST of mRNA_Ecto-sp13_S_contig18614.5835.1 vs. uniprot
Match: A0A835YSH7_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSH7_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 2.030e-20
Identity = 40/64 (62.50%), Postives = 49/64 (76.56%), Query Frame = 0
Query:    1 MPGRTAKQCRERYNNHVDPGIKKDKIWTAEEDALVMQLHAEHHNQFAKIARNIPGRCYDDVKNR 64
            MPGR  KQCRERY NH+DP +KK   WT EEDAL+ +LH + +N +A IAR +PGRC +DVKNR
Sbjct:   85 MPGRVGKQCRERYLNHLDPSLKKTP-WTPEEDALLTELHTKMNNSWADIARQMPGRCDNDVKNR 147          
BLAST of mRNA_Ecto-sp13_S_contig18614.5835.1 vs. uniprot
Match: B7G9A5_PHATC (Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G9A5_PHATC)

HSP 1 Score: 81.3 bits (199), Expect = 2.040e-18
Identity = 35/70 (50.00%), Postives = 52/70 (74.29%), Query Frame = 0
Query:    1 MPGRTAKQCRERYNNHVDPGIKKDKIWTAEEDALVMQLHAEHHNQFAKIARNIPGRCYDDVKNRRVSPVQ 70
            +PGR  KQCRER+ NH+DP +KK + WT +E+A+++ +H  H N++A IA+N+PGR  +DVKN   S +Q
Sbjct:   30 LPGRQGKQCRERFVNHLDPELKKGE-WTDDEEAILIAMHEHHGNRWANIAKNLPGRSDNDVKNHWYSTIQ 98          
BLAST of mRNA_Ecto-sp13_S_contig18614.5835.1 vs. uniprot
Match: A0A6H5JMK3_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMK3_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 2.220e-17
Identity = 37/64 (57.81%), Postives = 49/64 (76.56%), Query Frame = 0
Query:    1 MPGRTAKQCRERYNNHVDPGIKKDKIWTAEEDALVMQLHAEHHNQFAKIARNIPGRCYDDVKNR 64
            +PGR AKQCRERY NH+DP ++KD  WT +E+AL+M+L     NQ+A+I R + GR Y+DVKNR
Sbjct: 1063 IPGRIAKQCRERYLNHLDPSLRKDMPWTEDEEALLMRLCFAKQNQWAEICRQLHGRSYNDVKNR 1126          
BLAST of mRNA_Ecto-sp13_S_contig18614.5835.1 vs. uniprot
Match: A0A8J8NGV7_HALGN (Uncharacterized protein n=1 Tax=Halteria grandinella TaxID=5974 RepID=A0A8J8NGV7_HALGN)

HSP 1 Score: 83.6 bits (205), Expect = 4.090e-17
Identity = 33/64 (51.56%), Postives = 53/64 (82.81%), Query Frame = 0
Query:    1 MPGRTAKQCRERYNNHVDPGIKKDKIWTAEEDALVMQLHAEHHNQFAKIARNIPGRCYDDVKNR 64
            +PGR  KQCRER++NH+DP I+K+K W+AEED +++++H EH N++ +IA+++PGR  + +KNR
Sbjct:  209 LPGRIGKQCRERWHNHLDPNIRKEK-WSAEEDRIILEMHQEHGNKWCEIAKSLPGRTDNAIKNR 271          
BLAST of mRNA_Ecto-sp13_S_contig18614.5835.1 vs. uniprot
Match: D7FJZ9_ECTSI (Putative c-myb-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJZ9_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 7.010e-17
Identity = 36/64 (56.25%), Postives = 49/64 (76.56%), Query Frame = 0
Query:    1 MPGRTAKQCRERYNNHVDPGIKKDKIWTAEEDALVMQLHAEHHNQFAKIARNIPGRCYDDVKNR 64
            +PGR AKQCRERY NH+DP ++KD  WT +E+AL+M+L     NQ+A+I R + GR Y+DV+NR
Sbjct:  325 IPGRIAKQCRERYLNHLDPSLRKDMPWTEDEEALLMRLCFAKQNQWAEICRQLHGRSYNDVQNR 388          
BLAST of mRNA_Ecto-sp13_S_contig18614.5835.1 vs. uniprot
Match: D7G0Z5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Z5_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 1.440e-16
Identity = 38/64 (59.38%), Postives = 48/64 (75.00%), Query Frame = 0
Query:    1 MPGRTAKQCRERYNNHVDPGIKKDKIWTAEEDALVMQLHAEHHNQFAKIARNIPGRCYDDVKNR 64
            MPGR  KQCRERY NH+DP ++    WT EE+ L++ LHA  +NQ+A+IAR IPGR  +DVKNR
Sbjct:  656 MPGRVGKQCRERYLNHLDPSLRHGP-WTEEEERLLLSLHARLNNQWAEIARQIPGRSDNDVKNR 718          
BLAST of mRNA_Ecto-sp13_S_contig18614.5835.1 vs. uniprot
Match: A0A6H5L2W7_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2W7_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 1.450e-16
Identity = 38/64 (59.38%), Postives = 48/64 (75.00%), Query Frame = 0
Query:    1 MPGRTAKQCRERYNNHVDPGIKKDKIWTAEEDALVMQLHAEHHNQFAKIARNIPGRCYDDVKNR 64
            MPGR  KQCRERY NH+DP ++    WT EE+ L++ LHA  +NQ+A+IAR IPGR  +DVKNR
Sbjct: 1044 MPGRVGKQCRERYLNHLDPSLRHGP-WTEEEERLLLSLHARLNNQWAEIARQIPGRSDNDVKNR 1106          
BLAST of mRNA_Ecto-sp13_S_contig18614.5835.1 vs. uniprot
Match: A0A5J4Z4Z3_PORPP (Transcriptional activator Myb n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z4Z3_PORPP)

HSP 1 Score: 81.3 bits (199), Expect = 2.140e-16
Identity = 36/64 (56.25%), Postives = 49/64 (76.56%), Query Frame = 0
Query:    1 MPGRTAKQCRERYNNHVDPGIKKDKIWTAEEDALVMQLHAEHHNQFAKIARNIPGRCYDDVKNR 64
            MPGR++KQCRER+ NH+ P   K   WTAEEDAL+ QLH++H N++  IA+ +PGR  +D+KNR
Sbjct:  317 MPGRSSKQCRERWLNHLQPSAHKS-AWTAEEDALIAQLHSQHGNKWRLIAQYVPGRSDNDIKNR 379          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18614.5835.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KQ17_9PHAE6.070e-40100.00MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LH85_ECTSI7.470e-38100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YSH7_9STRA2.030e-2062.50Homeodomain-like protein (Fragment) n=1 Tax=Tribon... [more]
B7G9A5_PHATC2.040e-1850.00Predicted protein (Fragment) n=1 Tax=Phaeodactylum... [more]
A0A6H5JMK3_9PHAE2.220e-1757.81MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A8J8NGV7_HALGN4.090e-1751.56Uncharacterized protein n=1 Tax=Halteria grandinel... [more]
D7FJZ9_ECTSI7.010e-1756.25Putative c-myb-like transcription factor n=1 Tax=E... [more]
D7G0Z5_ECTSI1.440e-1659.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2W7_9PHAE1.450e-1659.38MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A5J4Z4Z3_PORPP2.140e-1656.25Transcriptional activator Myb n=1 Tax=Porphyridium... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainSMARTSM00717santcoord: 23..71
e-value: 4.7E-4
score: 29.5
IPR001005SANT/Myb domainPFAMPF00249Myb_DNA-bindingcoord: 27..64
e-value: 2.6E-8
score: 33.9
NoneNo IPR availableGENE3D1.10.10.60coord: 1..23
e-value: 2.0E-8
score: 35.9
NoneNo IPR availableGENE3D1.10.10.60coord: 26..66
e-value: 5.3E-11
score: 44.3
IPR015495Myb-like transcription factorPANTHERPTHR45614FAMILY NOT NAMEDcoord: 1..65
IPR017930Myb domainPROSITEPS51294HTH_MYBcoord: 22..70
score: 10.338
IPR017930Myb domainPROSITEPS51294HTH_MYBcoord: 1..21
score: 14.257
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 1..64

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18614contigEcto-sp13_S_contig18614:592..807 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18614.5835.1mRNA_Ecto-sp13_S_contig18614.5835.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig18614 592..828 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig18614.5835.1 ID=prot_Ecto-sp13_S_contig18614.5835.1|Name=mRNA_Ecto-sp13_S_contig18614.5835.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=72bp
MPGRTAKQCRERYNNHVDPGIKKDKIWTAEEDALVMQLHAEHHNQFAKIA
RNIPGRCYDDVKNRRVSPVQSR
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001005SANT/Myb
IPR015495Myb-like_TF
IPR017930Myb_dom
IPR009057Homeobox-like_sf