prot_Ecto-sp13_S_contig18613.5834.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig18613.5834.1
Unique Nameprot_Ecto-sp13_S_contig18613.5834.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length100
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18613.5834.1 vs. uniprot
Match: A0A6H5KCK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCK6_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 6.750e-36
Identity = 79/100 (79.00%), Postives = 84/100 (84.00%), Query Frame = 0 
Query:    1 MSLPVLSVRASLCSSALGSSLRHSASGRCVRNVVCSSFSRRRRSGDSNCNRPPKSCWSRRGRASSAVMVTRSQAPTPLQSRQLSSAASAAAPTLLFADTI 100
            MSLP+LSVRA+L SSALGSSLRH ASGRCVRN+     SRRR S DS CNRPP SCWSRRGRA SAVMV+RS +P  LQSRQLSSAASAAAPTLLF DTI
Sbjct:    1 MSLPLLSVRANLSSSALGSSLRHPASGRCVRNLA----SRRRCSSDSRCNRPPTSCWSRRGRAPSAVMVSRSPSPILLQSRQLSSAASAAAPTLLFGDTI 96
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BLAST of mRNA_Ecto-sp13_S_contig18613.5834.1 vs. uniprot
Match: D7G8E7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8E7_ECTSI)

HSP 1 Score: 50.8 bits (120), Expect = 1.080e-5
Identity = 29/33 (87.88%), Postives = 30/33 (90.91%), Query Frame = 0 
Query:   68 MVTRSQAPTPLQSRQLSSAASAAAPTLLFADTI 100
            MVTRSQAP  LQSRQLSSAASAAAPT+LF DTI
Sbjct:    1 MVTRSQAPALLQSRQLSSAASAAAPTVLFGDTI 33
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18613.5834.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KCK6_9PHAE6.750e-3679.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8E7_ECTSI1.080e-587.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..100
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..13

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18613contigEcto-sp13_S_contig18613:1768..2067 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18613.5834.1mRNA_Ecto-sp13_S_contig18613.5834.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig18613 1768..3357 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig18613.5834.1 ID=prot_Ecto-sp13_S_contig18613.5834.1|Name=mRNA_Ecto-sp13_S_contig18613.5834.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=100bp
MSLPVLSVRASLCSSALGSSLRHSASGRCVRNVVCSSFSRRRRSGDSNCN
RPPKSCWSRRGRASSAVMVTRSQAPTPLQSRQLSSAASAAAPTLLFADTI
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