mRNA_Ecto-sp13_S_contig18613.5834.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18613.5834.1
Unique NamemRNA_Ecto-sp13_S_contig18613.5834.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18613.5834.1 vs. uniprot
Match: A0A6H5KCK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCK6_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 6.740e-33
Identity = 79/100 (79.00%), Postives = 84/100 (84.00%), Query Frame = 2 
Query:  731 MSLPVLSVRASLCSSALGSSLRHSASGRCVRNVVCSSFSRRRRSGDSNCNRPPKSCWSRRGRASSAVMVTRSQAPTPLQSRQLSSAASAAAPTLLFADTI 1030
            MSLP+LSVRA+L SSALGSSLRH ASGRCVRN+     SRRR S DS CNRPP SCWSRRGRA SAVMV+RS +P  LQSRQLSSAASAAAPTLLF DTI
Sbjct:    1 MSLPLLSVRANLSSSALGSSLRHPASGRCVRNLA----SRRRCSSDSRCNRPPTSCWSRRGRAPSAVMVSRSPSPILLQSRQLSSAASAAAPTLLFGDTI 96
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18613.5834.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KCK6_9PHAE6.740e-3379.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18613contigEcto-sp13_S_contig18613:1768..3357 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1030
Hectar predicted targeting categorymitochondrion
Exons2
Ec32 ortholog descriptionFeS cluster biogenesis
Ec32 orthologEc-14_002770.1
Cds size300
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462955.0661922-CDS-Ecto-sp13_S_contig18613:1767..20671681462955.0661922-CDS-Ecto-sp13_S_contig18613:1767..2067Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18613 1768..2067 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462955.0811794-UTR-Ecto-sp13_S_contig18613:2067..23471681462955.0811794-UTR-Ecto-sp13_S_contig18613:2067..2347Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18613 2068..2347 -
1681462955.0948944-UTR-Ecto-sp13_S_contig18613:2907..33571681462955.0948944-UTR-Ecto-sp13_S_contig18613:2907..3357Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18613 2908..3357 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18613.5834.1prot_Ecto-sp13_S_contig18613.5834.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18613 1768..2067 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18613.5834.1

>prot_Ecto-sp13_S_contig18613.5834.1 ID=prot_Ecto-sp13_S_contig18613.5834.1|Name=mRNA_Ecto-sp13_S_contig18613.5834.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=100bp
MSLPVLSVRASLCSSALGSSLRHSASGRCVRNVVCSSFSRRRRSGDSNCN
RPPKSCWSRRGRASSAVMVTRSQAPTPLQSRQLSSAASAAAPTLLFADTI
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mRNA from alignment at Ecto-sp13_S_contig18613:1768..3357-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18613.5834.1 ID=mRNA_Ecto-sp13_S_contig18613.5834.1|Name=mRNA_Ecto-sp13_S_contig18613.5834.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1590bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18613:1768..3357- (Ectocarpus species13 EcNAP12_S_4_19m)
CTCTATCTGTGCCGTACAGCAACACTCCTTAACAGTTGGTTGCTTGGGAG
AGGAGGAGCTATTTATTGTAGAGGAAGGAGCAGCCGTTCTAGACTCGGGG
GGAAGAGCTCGCTCTTTTGTATTATATAGTGACAGACACAGACAGGGTTG
ATACTGCTGTAGGGACAAGAGAGGCGGACGCAGGGAGGGGAAGTTCAGCT
CCGCGATGTGAACGGAATTATTTTTGTTTCATTATGTTCCTCATCTACTT
GATCATGTTCTTCTCTCCGCCACGGTGACACTTCGCCTACCTCATTGGTT
TCTGTGTAGCTCCCGTCCGGTGAAGATTCCTGATGCTCTGGTGTGGTTCT
CGTTCGTGTTACTGCTCTGGCGCCCAAGTAGCTGCGGCTGAGAGAGGGAT
GGACGACGAGTGAGCGTGGGGACCTCAGGTGGATAGCGGCTGATCGTGAG
GTGAATGTTCATTCAATGTTATTTTTTCTTTTTTTTTCTTAATATCACAC
AACAAATCCATCTCTATCTATAGAAATAAGTCTAAGATACATTAGCAACG
AACCCGTAGCGTGAGCGAAAAGCTACCTGTATGTCTACGGTTTCCCAGAC
AGCATACAGCGATATCTCCCCTGTGGGTAGCAGGCTCAACAAGGCAGTTT
GGTAGCCATCTTGTTGCGTATCTATCTGTATGTATGTTACTTATGTTTGG
AAGTTGTAGACGGAAGATCTTGCATGTTCATTGAAGTTCAACGCGCCACC
TCTCAATAGTAATTGCTGGTCTGTTGGTGGTGTTGGGGGGATATTGGTTG
GGATGTAGCTTGTTCTTGTTGGTTGTTGGTTGTTGTTGTTGTTGTTGTCG
TTGCTCGCTTTAGACTGAAACACGCGTTCTGTTCTCTCTGCCCAGTGCAG
CTTGACAGCAAGAAAAAAAATAAACACTGAGCATTTGCAGCCCGATTATC
TCGTGGCTTGTTCGTGAAACGTGAATGCGTGAACGCCCGCTGCCCGCACG
TGCGTGCCAGCCAACCGGCAGACCACCAGCAGCGGACCAGCAGCGGACCA
GCAGCGGCAGACCAGCGGGAGACCAGCAGAAGACAAGAGGACCGTCATCA
ACAACAACGCCGCCCTTAACTTTTAGGGTCTCAGAGATATGAACCCCGGA
CGAGGACGGCATCCAAGATGTTGGAGCTCCGAAAATCCCGCGAGCCCGCT
GCGAGCTGCGAACGACGTCCGCTCCCCAGCTGGTAGGTAGACAGCAACTT
TTTCCTCGTCGCGCACTGATCGTTCTTGTGTTTGATCGCCATGTCATTAC
CAGTTCTCTCTGTGCGAGCAAGTTTGTGCTCGTCAGCGCTGGGTAGCAGC
TTGAGGCACTCAGCTTCTGGAAGGTGTGTCAGAAACGTGGTGTGTTCCAG
TTTCAGCCGACGCCGCCGCAGCGGCGACAGCAACTGCAACCGCCCGCCTA
AAAGTTGTTGGAGCAGACGAGGTCGAGCTTCTTCAGCAGTGATGGTCACA
AGGAGTCAAGCTCCAACACCATTGCAGTCACGGCAACTTTCTTCGGCAGC
ATCGGCAGCAGCACCAACACTGCTGTTTGCGGACACCATC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18613:1768..3357-

>mRNA_Ecto-sp13_S_contig18613.5834.1 ID=mRNA_Ecto-sp13_S_contig18613.5834.1|Name=mRNA_Ecto-sp13_S_contig18613.5834.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=300bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18613:1768..3357- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCATTACCAGTTCTCTCTGTGCGAGCAAGTTTGTGCTCGTCAGCGCT
GGGTAGCAGCTTGAGGCACTCAGCTTCTGGAAGGTGTGTCAGAAACGTGG
TGTGTTCCAGTTTCAGCCGACGCCGCCGCAGCGGCGACAGCAACTGCAAC
CGCCCGCCTAAAAGTTGTTGGAGCAGACGAGGTCGAGCTTCTTCAGCAGT
GATGGTCACAAGGAGTCAAGCTCCAACACCATTGCAGTCACGGCAACTTT
CTTCGGCAGCATCGGCAGCAGCACCAACACTGCTGTTTGCGGACACCATC
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