mRNA_Ecto-sp13_S_contig1861.5833.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1861.5833.1
Unique NamemRNA_Ecto-sp13_S_contig1861.5833.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1861.5833.1 vs. uniprot
Match: D8LEK4_ECTSI (Heat shock protein 40 like protein/ DnaJ domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEK4_ECTSI)

HSP 1 Score: 152 bits (385), Expect = 2.840e-45
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1 
Query:    1 MRDYYAILRVARTATNSEIKAAYRQIALAVHPDVNKGDKGSEDEFKDASEAYSVLADTEQRRIYDRTLGVRKVNSSSTR 237
            MRDYYAILRVARTATNSEIKAAYRQIALAVHPDVNKGDKGSEDEFKDASEAYSVLADTEQRRIYDRTLGVRKVNSSSTR
Sbjct:    1 MRDYYAILRVARTATNSEIKAAYRQIALAVHPDVNKGDKGSEDEFKDASEAYSVLADTEQRRIYDRTLGVRKVNSSSTR 79
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1861.5833.1 vs. uniprot
Match: A0A843SWU7_9BACT (Chaperone protein DnaJ n=1 Tax=Luteitalea sp. TaxID=2004800 RepID=A0A843SWU7_9BACT)

HSP 1 Score: 90.1 bits (222), Expect = 1.420e-19
Identity = 44/76 (57.89%), Postives = 61/76 (80.26%), Query Frame = 1 
Query:    4 RDYYAILRVARTATNSEIKAAYRQIALAVHPDVNKGDKGSEDEFKDASEAYSVLADTEQRRIYDRTLGVRKVNSSS 231
            RDYY +L VARTAT +E+K+AYR++A+  HPD N GDK +ED+FK+A+EAY VLAD E+R +YDR  G + V+S++
Sbjct:    4 RDYYDVLGVARTATEAELKSAYRKLAMKCHPDRNPGDKAAEDQFKEAAEAYGVLADPEKRDLYDR-FGHKAVSSAA 78
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1861.5833.1 vs. uniprot
Match: A0A7X4F7H7_9BACT (J domain-containing protein n=2 Tax=Candidatus Poribacteria bacterium TaxID=2026781 RepID=A0A7X4F7H7_9BACT)

HSP 1 Score: 88.2 bits (217), Expect = 2.750e-19
Identity = 46/75 (61.33%), Postives = 57/75 (76.00%), Query Frame = 1 
Query:    1 MRDYYAILRVARTATNSEIKAAYRQIALAVHPDVNKGDKGSEDEFKDASEAYSVLADTEQRRIYDRTLGVRKVNS 225
            MRDYY IL V R AT  EIK AYR++A+  HPD N GDKG+E++FK+AS AYSVL+D E+RR+YD T G   VN+
Sbjct:    1 MRDYYEILGVDRRATPEEIKKAYRKLAVQYHPDKNPGDKGAEEKFKEASNAYSVLSDPEKRRVYD-TRGHAGVNN 74
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1861.5833.1 vs. uniprot
Match: A0A317IBK5_9BACT (Molecular chaperone DnaJ (Fragment) n=1 Tax=Blastocatellia bacterium TaxID=2052146 RepID=A0A317IBK5_9BACT)

HSP 1 Score: 84.0 bits (206), Expect = 3.120e-19
Identity = 42/76 (55.26%), Postives = 57/76 (75.00%), Query Frame = 1 
Query:    4 RDYYAILRVARTATNSEIKAAYRQIALAVHPDVNKGDKGSEDEFKDASEAYSVLADTEQRRIYDRTLGVRKVNSSS 231
            RDYY +L ++RTAT+ EIK+AYR++A+  HPD N  D  +E++FK+A+EAY VL D EQRR YDR  G   V+SS+
Sbjct:    4 RDYYEVLGISRTATDQEIKSAYRRLAVRYHPDKNPNDASAEEKFKEAAEAYGVLCDAEQRRRYDR-FGHSGVSSSA 78
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1861.5833.1 vs. uniprot
Match: A0A7Y4WET3_9BACT (Chaperone protein DnaJ n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7Y4WET3_9BACT)

HSP 1 Score: 88.6 bits (218), Expect = 5.120e-19
Identity = 40/65 (61.54%), Postives = 55/65 (84.62%), Query Frame = 1 
Query:    4 RDYYAILRVARTATNSEIKAAYRQIALAVHPDVNKGDKGSEDEFKDASEAYSVLADTEQRRIYDR 198
            RDYY +L ++RTAT+ EIK++YR++AL  HPD N G K +ED+FK+A+EAYSVLAD ++RR+YDR
Sbjct:    4 RDYYEVLAISRTATDQEIKSSYRKLALQYHPDRNPGSKDAEDKFKEAAEAYSVLADQDKRRMYDR 68
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1861.5833.1 vs. uniprot
Match: UPI001ACC4E57 (Chaperone protein DnaJ n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=UPI001ACC4E57)

HSP 1 Score: 87.8 bits (216), Expect = 9.020e-19
Identity = 40/65 (61.54%), Postives = 54/65 (83.08%), Query Frame = 1 
Query:    4 RDYYAILRVARTATNSEIKAAYRQIALAVHPDVNKGDKGSEDEFKDASEAYSVLADTEQRRIYDR 198
            RDYY +L V+RTAT+ EIK A+R++A   HPD N GD+ SED+FK+ASEAY VL+D+E+R++YDR
Sbjct:    5 RDYYEVLGVSRTATDDEIKRAFRKLAKQYHPDANPGDQASEDKFKEASEAYQVLSDSEKRQLYDR 69
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1861.5833.1 vs. uniprot
Match: A0A2V8RT26_9BACT (Chaperone protein DnaJ n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8RT26_9BACT)

HSP 1 Score: 87.8 bits (216), Expect = 9.530e-19
Identity = 45/76 (59.21%), Postives = 59/76 (77.63%), Query Frame = 1 
Query:    4 RDYYAILRVARTATNSEIKAAYRQIALAVHPDVNKGDKGSEDEFKDASEAYSVLADTEQRRIYDRTLGVRKVNSSS 231
            RDYY +L V R+AT  EIK+AYR++A+  HPD N GDK +E++FK+A+EAYSVL+DTEQR  YDR  G   V+SS+
Sbjct:    4 RDYYEVLEVKRSATEQEIKSAYRRLAVKYHPDKNPGDKEAEEKFKEAAEAYSVLSDTEQRARYDR-FGHAGVSSSA 78
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1861.5833.1 vs. uniprot
Match: A0A2V8EUC1_9BACT (Chaperone protein DnaJ n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8EUC1_9BACT)

HSP 1 Score: 87.8 bits (216), Expect = 1.030e-18
Identity = 39/65 (60.00%), Postives = 56/65 (86.15%), Query Frame = 1 
Query:    4 RDYYAILRVARTATNSEIKAAYRQIALAVHPDVNKGDKGSEDEFKDASEAYSVLADTEQRRIYDR 198
            RDYY IL V+RTA++++IK AYR++A+ VHPD N GDK +E++FK+A+EAY++LAD E+R +YDR
Sbjct:    4 RDYYEILGVSRTASDADIKTAYRKLAMKVHPDRNPGDKAAEEKFKEAAEAYAILADAEKRSLYDR 68
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1861.5833.1 vs. uniprot
Match: A0A2V8C2C1_9BACT (Molecular chaperone DnaJ (Fragment) n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8C2C1_9BACT)

HSP 1 Score: 86.3 bits (212), Expect = 1.050e-18
Identity = 39/65 (60.00%), Postives = 53/65 (81.54%), Query Frame = 1 
Query:    4 RDYYAILRVARTATNSEIKAAYRQIALAVHPDVNKGDKGSEDEFKDASEAYSVLADTEQRRIYDR 198
            RDYY IL + R+AT+ EIK+AYR++A+  HPD N GDK +ED FK+A+EAY++LAD E+R +YDR
Sbjct:    4 RDYYEILGIQRSATDIEIKSAYRKLAMKYHPDRNPGDKAAEDRFKEAAEAYAILADAEKRTLYDR 68
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1861.5833.1 vs. uniprot
Match: A0A2V8HSB4_9BACT (Chaperone protein DnaJ n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8HSB4_9BACT)

HSP 1 Score: 87.4 bits (215), Expect = 1.070e-18
Identity = 40/65 (61.54%), Postives = 54/65 (83.08%), Query Frame = 1 
Query:    4 RDYYAILRVARTATNSEIKAAYRQIALAVHPDVNKGDKGSEDEFKDASEAYSVLADTEQRRIYDR 198
            RDYY +L V RT+T  EIK+AYR++AL  HPD N GDK +E++FK+A+EAY+VLADT++R +YDR
Sbjct:    5 RDYYEVLGVTRTSTEVEIKSAYRKLALKYHPDRNPGDKAAEEKFKEAAEAYAVLADTDKRHMYDR 69
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1861.5833.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEK4_ECTSI2.840e-45100.00Heat shock protein 40 like protein/ DnaJ domain co... [more]
A0A843SWU7_9BACT1.420e-1957.89Chaperone protein DnaJ n=1 Tax=Luteitalea sp. TaxI... [more]
A0A7X4F7H7_9BACT2.750e-1961.33J domain-containing protein n=2 Tax=Candidatus Por... [more]
A0A317IBK5_9BACT3.120e-1955.26Molecular chaperone DnaJ (Fragment) n=1 Tax=Blasto... [more]
A0A7Y4WET3_9BACT5.120e-1961.54Chaperone protein DnaJ n=1 Tax=Acidobacteria bacte... [more]
UPI001ACC4E579.020e-1961.54Chaperone protein DnaJ n=1 Tax=Anaerolineae bacter... [more]
A0A2V8RT26_9BACT9.530e-1959.21Chaperone protein DnaJ n=1 Tax=Acidobacteria bacte... [more]
A0A2V8EUC1_9BACT1.030e-1860.00Chaperone protein DnaJ n=1 Tax=Acidobacteria bacte... [more]
A0A2V8C2C1_9BACT1.050e-1860.00Molecular chaperone DnaJ (Fragment) n=1 Tax=Acidob... [more]
A0A2V8HSB4_9BACT1.070e-1861.54Chaperone protein DnaJ n=1 Tax=Acidobacteria bacte... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1861contigEcto-sp13_S_contig1861:12736..15456 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score152.5
Seed ortholog evalue8.1e-35
Seed eggNOG ortholog2880.D8LEK4
Model size237
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.heat shock protein binding
EggNOG OGsCOG0484@1,KOG0715@2759
Ec32 ortholog descriptionHeat shock protein 40 like protein/ DnaJ domain containing protein
Ec32 orthologEc-23_002700.1
Cds size237
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462955.015672-CDS-Ecto-sp13_S_contig1861:12735..128521681462955.015672-CDS-Ecto-sp13_S_contig1861:12735..12852Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1861 12736..12852 +
1681462955.0264292-CDS-Ecto-sp13_S_contig1861:15336..154561681462955.0264292-CDS-Ecto-sp13_S_contig1861:15336..15456Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1861 15337..15456 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1861.5833.1prot_Ecto-sp13_S_contig1861.5833.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1861 12736..15456 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1861.5833.1

>prot_Ecto-sp13_S_contig1861.5833.1 ID=prot_Ecto-sp13_S_contig1861.5833.1|Name=mRNA_Ecto-sp13_S_contig1861.5833.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=79bp
MRDYYAILRVARTATNSEIKAAYRQIALAVHPDVNKGDKGSEDEFKDASE
AYSVLADTEQRRIYDRTLGVRKVNSSSTR
back to top

mRNA from alignment at Ecto-sp13_S_contig1861:12736..15456+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1861.5833.1 ID=mRNA_Ecto-sp13_S_contig1861.5833.1|Name=mRNA_Ecto-sp13_S_contig1861.5833.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2721bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1861:12736..15456+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGAGACTACTACGCCATCCTTCGGGTTGCAAGGACGGCGACAAACTC
CGAGATCAAGGCGGCTTACCGACAGATCGCGCTTGCGGTTCATCCGGACG
TCAACAAGGGAGACAAGGTGGGCAAGAATATTTGCGGAGCCATCTCATCA
GCAGCACCGACGTCGCGTGTTCGTGTTTCTCTGACTGTACACACTCAACC
GCAGTCTCCTACATGGTTGGTGCTGTACAGCAGCCGGGGTCGGGATCTCA
TGCCCACGCGGGAGCATGGAGTGCCTGGTCGGAAGCATCCACTCTGAAAT
CGTTGGCGTGGCCGCTGTGTCTTGTGTGTTGGTGTATTCCCGCATTTTCT
CTCCGACGAATAACCACGTCGCCGATATCTCAACAGTCCCGAGCCGACTC
AACTGGTTTTTTCACATCGGGCACGGCAGGACGTATTTTGTTGTTGGCCG
TTGAGCAAGCAACAACTGCTGTGGAGTTCTATTCGAGGCAGGCCGGCCAA
CTTTGCTTCGCGAGCCTGCCTGGCACGTCGTCGATATCTCAACAGTCCCG
AACCGGCTCGCTTGTGTTGCGTTTCTGGCACAGCAGAACATCTGTAGTTG
GCTGTTGAGCAAAGCCACAACTGCTGCTTTGGATATCTGTTCCACCGCTT
GTATTTAGCCAGTAGTGATGTCAGTTCTCTGTTATCTGTGCCGCACAGGA
CAACTATGCTGATTTGTTCGAGGTAGGCCGGCCAATTAATGGGCTTCGCG
AGCCCGCCTTGCACGTCGCCGTCTATACTTTGCTTATACTTCACACTGCT
GTTGACACCGGGTGGGAGGCGTACTGCAGTGCTTGCACAGCCATCTCCCG
CGTTAGAGGCACCCTTCATGAGTAGCGTGGGGGAGTGCATTCATGGTTCC
ATAATTGTTTGATAACCTTTGTGGGTAAGCAGCAGCGTCCAAACTGTGGT
TCCCACAGTGTCGACGAAATCACGGGTTTACTCGGTAATTTTTCCGCCGA
ATTACCGCCGTGGTCGGCGGTCCCGGTAATCCGCCGTTCTACCGCCGTTT
TATTGTTTTACCGCCTCCGCCAAACTCGTTACCGCCGAGAAACGCGCTAC
CGCCTACCGTCAGTGCAATTACCGCCGTATGGCCTTACCGCCGAAAAGTT
AACGCCAACATTTTGTTTTTCCGCCTCCGCCAAAGTAGTTCCCGCCGAAA
ATCGCATTACCGGCTGCCGCCCAAACAATTACCGCCATACACTGTACGTC
GACAATGTACCGCTATACGGTATTCCCGCCGAAGAATGACCGCCGCGTAG
ATACGTTACCGCCGGACGATTGGCTGAGTGAGTAGAGGTTTTGCCTAGAC
TGCTGTACGACCACAGTGTGAATCAAGAGTTCGAGTCCGTCGTACTTTTT
CCGTCCATTCTTTTCATGAAGTATCTGTTCTTTGGTTCGGGAGAACCATT
GAATGTGTTGAGTGGACAGGGAGACGAGGAGGCGCGCGCATGTTTTTGCC
TCGAATTGACTCTTAAATGTGAAAGCCACTGGTGAAAACAAGGAAGCATA
CCAATCTTCGGCAAAGTGGTTTTCCGTCTGTTCCGGCGCGGTAACTTCCC
ACCGCAATTGCCGCCTTGTTTGGTGTCGCTTGAAAGTTGTGGCCATAGGC
AATGGCAATCATTACCGCCGTGAAATTTCCGTCGTGGTGGGCGGTCCCGG
TAATCCGCCGTTTCACCGCCATTTTGTTGGATTGACCGCCTCCGCCAAAC
TCGTTACCGGCAATAAACGCTTTACCGCCTACCGCCAAGACTAATACCGC
CGTATGGCGTTACCGCTAAACAAAATTACCGCCAAAATTCTGTGTTTCCA
CCTCCGCCAAAGTCGTTACCGCCGAAATTCGTACTTCCGCCTACCACCAC
AAAGAATAACCCCGACCGCCGAAACGTTACCCCCAAAATTTGGTTTTGAC
GCCTCCGGCAAAGCCGTTACCGCCGAAAAACGCATACCGTCTATCGCCAA
AACAATTACCGCCAAATGGCAATGCCGCCGAAAACCTGTACGCCTAAAAA
AGCGTTACCAAGTAAACCCTTGGAAAAATGTGTGGTGCTCTATTCCCAAG
TGTTGCACACCATGGAAGACACCACACAGCAGTACGCTGCTCCAGTGTCC
GATAGTGATTGCAGACAGGTGTACAGCAGCACCTACAGCAGTAGTCCAGC
CTGTGCAATCAGGGCTACGGCTGTATCAGAAGCGGCGTTAGCTGCAACGC
TGCGGCGGTGATTTTGAAGTGCACTTGAGAATAGAAAGAGAAATGGGGAT
ACCCTTGTAAAGAAGGTTTTAACAGTATGTACAGTGTCGCACCTCTCGAC
AAGCTTCCATTGCATCACAAAATCTCTCTCCTTGTTTATAGTCGACAGGA
AAGTGCCAGCCCCACGCAAGTCTCGGCACCACAAACGCCGTAAGAGAAAA
TGCCAGTCCCACGCAAAAACAGAAATTAGGCACCATAAAAAACCGTGGTC
GATCTCCTCCTTCTTTCGCTTTGCTTCTCCTTCTTTCGCTTCGCTCCTCT
TTGTTTCGCTCCGCGTTCAAACAACGTCCGCGTGGCATGTTTGTATGGTA
GGGGTCGGAGGACGAGTTCAAGGATGCCTCGGAGGCGTACAGCGTGCTCG
CCGACACCGAGCAGCGCAGGATATACGACCGAACTCTCGGGGTGCGCAAG
GTCAACTCCTCAAGCACAAGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1861:12736..15456+

>mRNA_Ecto-sp13_S_contig1861.5833.1 ID=mRNA_Ecto-sp13_S_contig1861.5833.1|Name=mRNA_Ecto-sp13_S_contig1861.5833.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=237bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1861:12736..15456+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGAGACTACTACGCCATCCTTCGGGTTGCAAGGACGGCGACAAACTC
CGAGATCAAGGCGGCTTACCGACAGATCGCGCTTGCGGTTCATCCGGACG
TCAACAAGGGAGACAAGGGGTCGGAGGACGAGTTCAAGGATGCCTCGGAG
GCGTACAGCGTGCTCGCCGACACCGAGCAGCGCAGGATATACGACCGAAC
TCTCGGGGTGCGCAAGGTCAACTCCTCAAGCACAAGG
back to top