mRNA_Ecto-sp13_S_contig1861.5830.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1861.5830.1
Unique NamemRNA_Ecto-sp13_S_contig1861.5830.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1861.5830.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1861contigEcto-sp13_S_contig1861:3296..4094 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size799
Hectar predicted targeting categoryother localisation
Exons1
Cds size459
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462954.838839-UTR-Ecto-sp13_S_contig1861:3295..33201681462954.838839-UTR-Ecto-sp13_S_contig1861:3295..3320Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1861 3296..3320 +
1681462954.8740015-UTR-Ecto-sp13_S_contig1861:3779..40941681462954.8740015-UTR-Ecto-sp13_S_contig1861:3779..4094Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1861 3780..4094 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462954.8564446-CDS-Ecto-sp13_S_contig1861:3320..37791681462954.8564446-CDS-Ecto-sp13_S_contig1861:3320..3779Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1861 3321..3779 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1861.5830.1prot_Ecto-sp13_S_contig1861.5830.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1861 3321..3779 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1861.5830.1

>prot_Ecto-sp13_S_contig1861.5830.1 ID=prot_Ecto-sp13_S_contig1861.5830.1|Name=mRNA_Ecto-sp13_S_contig1861.5830.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=153bp
MSPCSQGPLQPQPFVGAHVHALGPCCCQKSNESVRIANLHPTTCRLLDTR
SVRKLRSQAPIVPVSKTHTKSVRTTPTGEGKRQPFGCWKSTRTSQSHSRQ
EITLARKAVLCAVAVRAYARTPTQRKGTKCRGSHFAGDGYELLPESRLRQ
VT*
back to top

mRNA from alignment at Ecto-sp13_S_contig1861:3296..4094+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1861.5830.1 ID=mRNA_Ecto-sp13_S_contig1861.5830.1|Name=mRNA_Ecto-sp13_S_contig1861.5830.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=799bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1861:3296..4094+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCATATTTTGTTGCCAAGAAGCACATGAGCCCGTGTTCGCAGGGACCCT
TGCAACCACAACCATTCGTCGGCGCGCATGTGCATGCGTTGGGGCCTTGC
TGCTGTCAGAAATCCAATGAATCTGTGCGCATAGCGAACTTGCACCCAAC
AACTTGTCGGCTTCTAGATACGCGGTCCGTCCGAAAACTTCGGTCACAAG
CTCCCATAGTCCCTGTTAGCAAAACCCATACTAAATCCGTTCGAACAACG
CCAACCGGGGAAGGCAAGAGACAGCCGTTTGGTTGTTGGAAATCCACACG
CACGTCTCAAAGTCACAGCAGGCAGGAGATAACACTAGCGAGAAAGGCGG
TGTTGTGTGCTGTTGCCGTTCGTGCGTACGCACGCACACCCACGCAGCGT
AAGGGAACAAAATGCAGAGGCTCCCATTTCGCGGGGGACGGGTATGAATT
ACTTCCCGAATCACGTCTGCGCCAAGTTACGTAGCGGGCTTTGCGCTTGG
AACACTATCGGTGTTACAGAAAACAGCCTCTAGGTACGGGATCCAACCTG
GCGAAAACGTTTTGCCCTATTGTAGGATGGCAAGCCCGAGCGTAACCCGC
TGCTCTTCAAACCGTTCAACCAAGCGCACGGCGATGACTGCTGCTCTGGC
TGCAACGCACAAGCATGTGATATCCACCGCAGCACCGTCCACAGTAGCAG
TGGGCAAACGAGGTCGGTTGTCGCGAACGAACGAGCTAAATAGCTCCCCT
ACCGATATGCCACCCTTCCCTACGAAAATGCCCGTAGTATCCCATGGTA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1861:3296..4094+

>mRNA_Ecto-sp13_S_contig1861.5830.1 ID=mRNA_Ecto-sp13_S_contig1861.5830.1|Name=mRNA_Ecto-sp13_S_contig1861.5830.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=459bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1861:3296..4094+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCCCGTGTTCGCAGGGACCCTTGCAACCACAACCATTCGTCGGCGC
GCATGTGCATGCGTTGGGGCCTTGCTGCTGTCAGAAATCCAATGAATCTG
TGCGCATAGCGAACTTGCACCCAACAACTTGTCGGCTTCTAGATACGCGG
TCCGTCCGAAAACTTCGGTCACAAGCTCCCATAGTCCCTGTTAGCAAAAC
CCATACTAAATCCGTTCGAACAACGCCAACCGGGGAAGGCAAGAGACAGC
CGTTTGGTTGTTGGAAATCCACACGCACGTCTCAAAGTCACAGCAGGCAG
GAGATAACACTAGCGAGAAAGGCGGTGTTGTGTGCTGTTGCCGTTCGTGC
GTACGCACGCACACCCACGCAGCGTAAGGGAACAAAATGCAGAGGCTCCC
ATTTCGCGGGGGACGGGTATGAATTACTTCCCGAATCACGTCTGCGCCAA
GTTACGTAG
back to top